Wall clock time and date at job start Tue Mar 31 2020 05:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99571 * 2 1 4 4 O 1.21285 * 119.99876 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00283 * 359.97438 * 3 2 1 6 6 N 1.46905 * 109.47165 * 180.02562 * 5 3 2 7 7 C 1.48560 * 110.99577 * 169.99909 * 6 5 3 8 8 C 1.54378 * 104.69549 * 200.89794 * 7 6 5 9 9 C 1.54571 * 104.91190 * 23.88545 * 8 7 6 10 10 C 1.48555 * 110.99889 * 54.58389 * 6 5 3 11 11 C 1.46501 * 120.00625 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.88979 * 176.12060 * 11 2 1 13 13 C 1.55156 * 111.00300 * 300.00489 * 11 2 1 14 14 C 1.54328 * 102.94217 * 153.57180 * 13 11 2 15 15 N 1.47023 * 107.26835 * 337.80733 * 14 13 11 16 16 C 1.36940 * 125.64632 * 178.95941 * 15 14 13 17 17 H 1.07998 * 119.99813 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99867 * 359.97438 * 16 15 14 19 19 N 1.31611 * 120.00267 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99738 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46830 * 89.99938 * 20 18 16 22 22 H 1.48500 * 109.46889 * 209.99846 * 20 18 16 23 23 H 1.48496 * 109.46824 * 329.99906 * 20 18 16 24 24 C 1.47425 * 108.70652 * 358.93918 * 15 14 13 25 25 H 1.09001 * 109.46532 * 90.00441 * 1 2 3 26 26 H 1.08999 * 109.47017 * 209.99850 * 1 2 3 27 27 H 1.08994 * 109.47637 * 330.00465 * 1 2 3 28 28 H 1.09000 * 109.46851 * 60.00107 * 5 3 2 29 29 H 1.08997 * 109.46905 * 300.00243 * 5 3 2 30 30 H 1.09002 * 110.41441 * 319.73871 * 7 6 5 31 31 H 1.09002 * 110.41248 * 82.06172 * 7 6 5 32 32 H 1.09006 * 110.32557 * 142.80924 * 8 7 6 33 33 H 1.08996 * 110.32821 * 265.02105 * 8 7 6 34 34 H 1.08995 * 110.29758 * 241.08109 * 9 8 7 35 35 H 1.09004 * 110.40408 * 118.93657 * 9 8 7 36 36 H 1.09005 * 110.41154 * 277.81401 * 10 6 5 37 37 H 1.08998 * 110.41848 * 40.13562 * 10 6 5 38 38 H 1.08994 * 110.72075 * 271.93648 * 13 11 2 39 39 H 1.09001 * 110.72045 * 35.03067 * 13 11 2 40 40 H 1.08996 * 109.88272 * 97.21991 * 14 13 11 41 41 H 1.09000 * 109.88458 * 218.38894 * 14 13 11 42 42 H 0.97000 * 120.00588 * 180.02562 * 19 18 16 43 43 H 1.09002 * 110.36353 * 265.29022 * 24 15 14 44 44 H 1.09000 * 110.36492 * 142.96858 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 7 2.3399 3.5890 -0.0011 7 6 1.6475 4.8810 -0.2425 8 6 2.7558 5.8314 -0.7442 9 6 3.8423 4.9012 -1.3302 10 6 3.2967 3.4708 -1.1313 11 6 2.1976 -1.2687 0.0006 12 1 3.2718 -1.0972 -0.0684 13 6 1.8485 -2.1119 1.2553 14 6 2.1065 -3.5582 0.7826 15 7 2.0267 -3.5583 -0.6855 16 6 2.2168 -4.6463 -1.4950 17 1 2.1357 -4.5425 -2.5669 18 6 2.5137 -5.8826 -0.9377 19 7 2.6130 -6.0089 0.3685 20 14 2.7723 -7.3669 -2.0420 21 1 4.2076 -7.4660 -2.4101 22 1 2.3600 -8.5980 -1.3211 23 1 1.9549 -7.2167 -3.2726 24 6 1.7076 -2.1932 -1.1418 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5137 28 1 0.7583 2.5302 0.8892 29 1 0.7589 2.5298 -0.8908 30 1 0.8755 4.7624 -1.0028 31 1 1.2134 5.2585 0.6833 32 1 2.3654 6.4939 -1.5168 33 1 3.1604 6.4122 0.0847 34 1 4.7800 5.0273 -0.7891 35 1 3.9873 5.1071 -2.3907 36 1 4.1062 2.7876 -0.8743 37 1 2.7832 3.1295 -2.0301 38 1 2.5043 -1.8553 2.0871 39 1 0.8035 -1.9749 1.5335 40 1 3.0982 -3.8805 1.0998 41 1 1.3484 -4.2239 1.1951 42 1 2.8208 -6.8726 0.7579 43 1 0.6327 -2.0826 -1.2847 44 1 2.2393 -1.9683 -2.0663 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033666745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:53 Heat of formation + Delta-G solvation = -11.060631 kcal Electronic energy + Delta-G solvation = -22788.569893 eV Core-core repulsion = 19548.141720 eV Total energy + Delta-G solvation = -3240.428173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37112 -39.66941 -38.55872 -36.26549 -34.19095 -33.16815 -31.14425 -29.70096 -29.43551 -27.93183 -27.39606 -26.07054 -22.69145 -22.06708 -21.73553 -21.57722 -20.01403 -18.95837 -18.28076 -17.43534 -16.88104 -16.77239 -16.56344 -16.31073 -15.85170 -15.20017 -14.90689 -14.47443 -14.31087 -14.12202 -14.03263 -13.79396 -13.61902 -13.27028 -13.16345 -12.97816 -12.93041 -12.75108 -12.53802 -12.30884 -12.15787 -12.08129 -12.04062 -11.92033 -11.80720 -11.50852 -11.36620 -10.74541 -10.62399 -9.65949 -9.42322 -8.93669 -7.87539 -5.24716 1.44941 1.47604 1.56020 1.60258 1.86809 2.48803 3.06582 3.31084 3.46910 3.65858 3.76251 3.90236 3.92089 4.02580 4.10522 4.18724 4.24577 4.31783 4.36868 4.43480 4.54968 4.62035 4.66962 4.69603 4.77092 4.80072 4.91128 4.92483 5.02220 5.03002 5.12257 5.17090 5.27370 5.28831 5.40772 5.55511 5.60179 5.70142 5.86438 5.96676 6.15634 6.46278 7.06137 7.20253 7.72164 8.36143 9.22655 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.003343 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.622261 B = 8373.332718 C = 8649.797050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.601 5.601 3 C 0.505 3.495 4 O -0.573 6.573 5 C 0.037 3.963 6 N -0.518 5.518 7 C 0.031 3.969 8 C -0.120 4.120 9 C -0.125 4.125 10 C 0.029 3.971 11 C 0.140 3.860 12 H 0.075 0.925 13 C -0.134 4.134 14 C 0.189 3.811 15 N -0.626 5.626 16 C -0.246 4.246 17 H 0.083 0.917 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.981 3.019 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.266 1.266 24 C 0.134 3.866 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.008 0.992 41 H 0.017 0.983 42 H 0.248 0.752 43 H 0.044 0.956 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 23.360 -1.204 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.333 5.333 3 C 0.294 3.706 4 O -0.452 6.452 5 C -0.094 4.094 6 N -0.243 5.243 7 C -0.097 4.097 8 C -0.158 4.158 9 C -0.164 4.164 10 C -0.099 4.099 11 C 0.035 3.965 12 H 0.093 0.907 13 C -0.173 4.173 14 C 0.063 3.937 15 N -0.352 5.352 16 C -0.375 4.375 17 H 0.101 0.899 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.191 1.191 24 C 0.008 3.992 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.124 0.876 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.107 0.893 40 H 0.026 0.974 41 H 0.035 0.965 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.685 23.138 -0.672 24.094 hybrid contribution 0.129 -1.579 -1.087 1.921 sum -6.556 21.559 -1.759 22.603 Atomic orbital electron populations 1.22100 0.77060 1.04877 1.03327 1.47837 1.08446 1.04416 1.72625 1.21241 0.87905 0.86174 0.75256 1.90644 1.16032 1.87466 1.51039 1.22276 0.94572 0.87284 1.05284 1.65281 1.14426 1.01853 1.42784 1.23279 0.96265 0.88623 1.01490 1.22353 0.95043 0.97265 1.01098 1.22377 0.99210 0.93324 1.01450 1.23205 0.97000 0.98378 0.91304 1.21881 0.96295 0.82635 0.95701 0.90685 1.23036 1.02343 0.94901 0.96976 1.20867 0.97803 0.91824 0.83169 1.44676 1.83196 1.04589 1.02784 1.19452 1.40919 0.87048 0.90065 0.89934 1.25692 1.02084 1.00563 0.97438 1.70175 1.55795 1.23658 1.10306 0.85041 0.77723 0.78433 0.77891 1.21481 1.21809 1.19114 1.21838 0.97980 0.84242 0.95141 0.91227 0.90701 0.87622 0.85077 0.89418 0.92413 0.88708 0.89455 0.90705 0.91801 0.90407 0.91006 0.94886 0.91229 0.89344 0.97362 0.96468 0.94261 0.93845 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 8.85 127.77 1.13 2.39 16 2 N -0.60 -16.92 2.91 -814.83 -2.37 -19.29 16 3 C 0.50 14.70 7.39 87.66 0.65 15.35 16 4 O -0.57 -22.05 13.05 -3.04 -0.04 -22.09 16 5 C 0.04 0.70 4.10 85.56 0.35 1.05 16 6 N -0.52 -11.33 5.34 -886.05 -4.73 -16.06 16 7 C 0.03 0.43 6.48 86.45 0.56 0.99 16 8 C -0.12 -1.61 7.02 31.60 0.22 -1.39 16 9 C -0.13 -2.27 7.01 31.60 0.22 -2.05 16 10 C 0.03 0.70 5.31 86.45 0.46 1.16 16 11 C 0.14 5.25 3.45 46.38 0.16 5.41 16 12 H 0.07 3.30 7.02 -2.39 -0.02 3.28 16 13 C -0.13 -5.08 6.51 31.78 0.21 -4.87 16 14 C 0.19 9.57 5.37 86.73 0.47 10.04 16 15 N -0.63 -32.98 3.39 -691.97 -2.35 -35.33 16 16 C -0.25 -14.08 10.28 84.03 0.86 -13.21 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.06 -3.74 5.49 84.86 0.47 -3.27 16 19 N -0.95 -58.03 10.31 21.65 0.22 -57.81 16 20 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C 0.13 5.62 6.79 86.86 0.59 6.21 16 25 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 26 H 0.07 1.50 6.41 -2.39 -0.02 1.49 16 27 H 0.11 1.16 6.44 -2.39 -0.02 1.14 16 28 H 0.13 1.82 7.40 -2.39 -0.02 1.81 16 29 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 30 H 0.06 0.66 7.82 -2.39 -0.02 0.65 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 2.32 6.05 -2.38 -0.01 2.30 16 37 H 0.03 0.79 7.99 -2.39 -0.02 0.77 16 38 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.09 2.88 6.40 -2.39 -0.02 2.86 16 40 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 41 H 0.02 0.95 7.51 -2.39 -0.02 0.93 16 42 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.04 1.66 7.00 -2.39 -0.02 1.64 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -74.16 336.42 0.08 -74.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.97 Total: 10.36 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 6.34 Total: 17.81 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -9.22 Total: -128.49 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.16 0.08 -74.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033666745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.026 kcal (2) G-P(sol) polarization free energy of solvation -74.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds