Wall clock time and date at job start Tue Mar 31 2020 05:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00081 * 2 1 4 4 C 1.46902 * 111.00141 * 123.95736 * 2 1 3 5 5 C 1.53002 * 109.47107 * 66.04216 * 4 2 1 6 6 C 1.50704 * 109.46658 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00201 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99827 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99932 * 179.97438 * 8 6 5 10 10 H 1.08993 * 110.56297 * 36.44520 * 9 8 6 11 11 C 1.54851 * 110.62897 * 273.54201 * 9 8 6 12 12 C 1.55844 * 103.44831 * 241.51390 * 11 9 8 13 13 H 1.09004 * 115.55751 * 159.56301 * 12 11 9 14 14 C 1.55842 * 105.06300 * 288.17374 * 12 11 9 15 15 C 1.54856 * 103.44455 * 71.82574 * 14 12 11 16 16 C 1.55776 * 110.60423 * 159.34972 * 9 8 6 17 17 H 1.08997 * 115.64869 * 318.87155 * 16 9 8 18 18 N 1.50234 * 101.05066 * 32.93890 * 12 11 9 19 19 C 1.36931 * 130.84288 * 126.03628 * 18 12 11 20 20 H 1.08001 * 120.00637 * 185.04291 * 19 18 12 21 21 C 1.38812 * 119.99967 * 5.03185 * 19 18 12 22 22 N 1.31624 * 119.99987 * 8.99463 * 21 19 18 23 23 Si 1.86806 * 120.00282 * 188.99703 * 21 19 18 24 24 H 1.48493 * 109.47186 * 94.08981 * 23 21 19 25 25 H 1.48503 * 109.46686 * 214.09794 * 23 21 19 26 26 H 1.48507 * 109.46935 * 334.08882 * 23 21 19 27 27 H 1.09004 * 109.47325 * 296.04266 * 1 2 3 28 28 H 1.08993 * 109.47439 * 56.04514 * 1 2 3 29 29 H 1.09007 * 109.46927 * 176.04661 * 1 2 3 30 30 H 1.09004 * 109.47517 * 183.95465 * 3 2 1 31 31 H 1.09001 * 109.47312 * 303.95750 * 3 2 1 32 32 H 1.09007 * 109.47322 * 63.95244 * 3 2 1 33 33 H 1.09002 * 109.46665 * 306.04357 * 4 2 1 34 34 H 1.08995 * 109.46913 * 186.04658 * 4 2 1 35 35 H 1.08994 * 109.46659 * 60.00691 * 5 4 2 36 36 H 1.08995 * 109.47594 * 300.00025 * 5 4 2 37 37 H 0.97002 * 119.99859 * 359.97438 * 8 6 5 38 38 H 1.08995 * 110.62598 * 123.02032 * 11 9 8 39 39 H 1.09006 * 110.62546 * 0.02562 * 11 9 8 40 40 H 1.09001 * 110.62611 * 313.33606 * 14 12 11 41 41 H 1.08999 * 110.62456 * 190.31276 * 14 12 11 42 42 H 1.08994 * 110.62285 * 118.49129 * 15 14 12 43 43 H 1.09004 * 110.61969 * 241.34983 * 15 14 12 44 44 H 0.96992 * 120.00110 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9703 6 6 2.1710 -3.0284 2.1376 7 8 2.7866 -2.4630 3.0165 8 7 1.9705 -4.3594 2.2044 9 6 2.4955 -5.1233 3.3388 10 1 2.4263 -4.5408 4.2574 11 6 3.9592 -5.5548 3.0755 12 6 3.8880 -7.1114 3.0989 13 1 4.7107 -7.6273 2.6036 14 6 3.6641 -7.4841 4.5954 15 6 2.2003 -7.0527 4.8588 16 6 1.7364 -6.4754 3.4876 17 1 0.6578 -6.4300 3.3372 18 7 2.5152 -7.3454 2.5352 19 6 2.0991 -8.1128 1.4803 20 1 1.0641 -8.0918 1.1722 21 6 3.0075 -8.9178 0.8067 22 7 4.2226 -9.0818 1.2852 23 14 2.5055 -9.7682 -0.7789 24 1 2.9008 -8.9282 -1.9378 25 1 3.1826 -11.0868 -0.8692 26 1 1.0336 -9.9660 -0.7901 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5739 -0.8524 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1755 35 1 2.0658 -2.6213 0.0451 36 1 0.5472 -2.3476 0.9323 37 1 1.4785 -4.8116 1.5012 38 1 4.6154 -5.1885 3.8649 39 1 4.2946 -5.2000 2.1009 40 1 4.3492 -6.9289 5.2360 41 1 3.7810 -8.5574 4.7454 42 1 1.5915 -7.9121 5.1395 43 1 2.1595 -6.2856 5.6321 44 1 4.8573 -9.6445 0.8148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110976738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:21 Heat of formation + Delta-G solvation = 9.393558 kcal Electronic energy + Delta-G solvation = -22890.768578 eV Core-core repulsion = 19651.227366 eV Total energy + Delta-G solvation = -3239.541212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.83581 -38.58191 -37.29741 -33.73940 -32.52720 -31.37721 -29.10497 -28.82490 -27.77456 -27.74136 -25.07203 -24.13803 -21.88693 -20.84987 -19.87085 -19.59614 -18.61740 -17.01006 -16.90251 -15.94294 -15.76303 -15.04524 -14.88019 -14.74489 -14.59598 -13.96658 -13.75564 -13.41153 -12.94549 -12.74973 -12.54991 -12.05963 -11.93983 -11.88893 -11.79349 -11.56725 -11.23126 -11.13505 -10.95495 -10.93500 -10.88995 -10.50712 -10.35250 -10.08352 -9.94899 -9.67818 -9.28780 -9.09593 -8.89238 -8.54599 -8.45025 -6.94893 -5.77410 -3.13456 3.00671 3.36155 3.41054 3.43701 3.46352 4.03079 4.40183 4.83699 4.94548 5.06500 5.11511 5.17472 5.22319 5.33358 5.37461 5.44758 5.54776 5.65075 5.68096 5.69356 5.74850 5.87658 5.90849 5.94919 6.06284 6.10958 6.15484 6.31079 6.42781 6.49044 6.60551 6.76277 6.82860 6.83463 6.84428 6.95606 7.13975 7.33090 7.46861 7.77635 8.01925 8.11585 8.65180 9.04695 9.68945 10.51309 11.33711 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017365 B = 0.004486 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.047973 B = 6239.962740 C = 7278.257458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.551 5.551 3 C 0.026 3.974 4 C 0.072 3.928 5 C -0.139 4.139 6 C 0.510 3.490 7 O -0.557 6.557 8 N -0.706 5.706 9 C 0.131 3.869 10 H 0.076 0.924 11 C -0.144 4.144 12 C 0.159 3.841 13 H 0.144 0.856 14 C -0.136 4.136 15 C -0.128 4.128 16 C 0.124 3.876 17 H 0.088 0.912 18 N -0.590 5.590 19 C -0.217 4.217 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.916 5.916 23 Si 0.912 3.088 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.025 0.975 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.402 0.598 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.860 13.958 0.408 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.275 5.275 3 C -0.123 4.123 4 C -0.056 4.056 5 C -0.179 4.179 6 C 0.296 3.704 7 O -0.436 6.436 8 N -0.355 5.355 9 C 0.024 3.976 10 H 0.094 0.906 11 C -0.184 4.184 12 C 0.052 3.948 13 H 0.161 0.839 14 C -0.175 4.175 15 C -0.168 4.168 16 C 0.016 3.984 17 H 0.106 0.894 18 N -0.311 5.311 19 C -0.345 4.345 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.564 5.564 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.237 0.763 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.227 13.883 0.358 14.839 hybrid contribution -0.775 -0.328 -0.394 0.929 sum -6.002 13.556 -0.036 14.825 Atomic orbital electron populations 1.22462 0.87580 1.02505 1.00365 1.61961 1.07966 1.13917 1.43611 1.22358 1.00953 0.88611 1.00329 1.21820 1.01038 0.91792 0.90941 1.21628 1.02512 0.95324 0.98441 1.20511 0.79914 0.82692 0.87293 1.90655 1.42017 1.70111 1.40819 1.46038 1.56468 1.07017 1.26016 1.22581 0.95133 0.92160 0.87688 0.90552 1.23461 0.94625 1.00088 1.00254 1.23510 0.90929 0.90310 0.90010 0.83874 1.23034 0.94759 1.00291 0.99444 1.22870 0.97875 0.99403 0.96665 1.23213 0.94954 0.89513 0.90737 0.89391 1.46618 1.01820 1.51011 1.31625 1.18995 0.94499 1.17279 1.03703 0.90419 1.24710 0.96359 0.99732 0.99687 1.69621 1.05364 1.42139 1.39228 0.86093 0.77490 0.78702 0.83400 1.21692 1.21822 1.20734 0.95639 0.91473 0.90999 0.91220 0.91427 0.95659 0.94017 0.89950 0.88114 0.89280 0.76307 0.92776 0.92361 0.93438 0.92417 0.92473 0.93124 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.32 60.07 0.56 0.73 16 2 N -0.55 -5.99 5.02 -251.26 -1.26 -7.25 16 3 C 0.03 0.23 9.57 60.06 0.57 0.81 16 4 C 0.07 0.89 4.25 -3.82 -0.02 0.88 16 5 C -0.14 -1.73 5.62 -27.88 -0.16 -1.89 16 6 C 0.51 8.29 7.83 -10.98 -0.09 8.20 16 7 O -0.56 -10.82 15.70 5.56 0.09 -10.74 16 8 N -0.71 -11.82 5.10 -51.44 -0.26 -12.08 16 9 C 0.13 2.42 2.72 -65.48 -0.18 2.24 16 10 H 0.08 1.43 7.37 -51.93 -0.38 1.04 16 11 C -0.14 -2.93 6.22 -24.24 -0.15 -3.08 16 12 C 0.16 3.62 4.65 -62.81 -0.29 3.32 16 13 H 0.14 3.74 5.76 -51.93 -0.30 3.44 16 14 C -0.14 -2.72 6.44 -24.24 -0.16 -2.88 16 15 C -0.13 -2.34 6.43 -24.24 -0.16 -2.50 16 16 C 0.12 2.39 5.07 -62.59 -0.32 2.08 16 17 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 18 N -0.59 -13.86 2.99 -145.53 -0.43 -14.29 16 19 C -0.22 -5.62 10.57 -15.06 -0.16 -5.78 16 20 H 0.08 1.94 7.84 -52.49 -0.41 1.53 16 21 C -0.01 -0.23 5.47 -17.43 -0.10 -0.32 16 22 N -0.92 -25.69 10.64 55.49 0.59 -25.10 16 23 Si 0.91 21.27 29.56 -169.99 -5.03 16.25 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 29 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.08 1.11 8.02 -51.93 -0.42 0.69 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.09 0.95 6.55 -51.93 -0.34 0.61 16 37 H 0.40 6.42 8.62 -40.82 -0.35 6.07 16 38 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 39 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 40 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.81 7.83 -51.93 -0.41 0.41 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -29.73 346.16 -9.24 -38.98 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.53 Total: 7.22 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.63 Total: 1.81 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -1.37 Total: -58.73 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.73 -9.24 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110976738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.370 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds