Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46741 * 2 1 4 4 H 1.08996 * 109.46959 * 304.99810 * 3 2 1 5 5 C 1.52998 * 109.47416 * 65.00099 * 3 2 1 6 6 N 1.46504 * 109.46680 * 184.99839 * 3 2 1 7 7 N 1.40582 * 127.38098 * 297.74396 * 6 3 2 8 8 N 1.28910 * 106.81255 * 179.97438 * 7 6 3 9 9 N 1.28422 * 110.32004 * 359.97438 * 8 7 6 10 10 C 1.31474 * 110.50489 * 359.74575 * 9 8 7 11 11 N 1.38375 * 126.43804 * 180.25754 * 10 9 8 12 12 C 1.46896 * 111.00498 * 253.02117 * 11 10 9 13 13 C 1.50703 * 109.46950 * 61.84351 * 12 11 10 14 14 H 1.08001 * 119.99897 * 4.17844 * 13 12 11 15 15 C 1.37880 * 120.00187 * 184.16841 * 13 12 11 16 16 N 1.31511 * 119.99612 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99791 * 0.02562 * 15 13 12 18 18 H 1.48508 * 109.47059 * 89.99807 * 17 15 13 19 19 H 1.48502 * 109.46915 * 209.99495 * 17 15 13 20 20 H 1.48492 * 109.47418 * 329.99682 * 17 15 13 21 21 C 1.46901 * 111.00337 * 16.97836 * 11 10 9 22 22 C 1.53002 * 109.47354 * 164.75221 * 21 11 10 23 23 C 1.53000 * 109.46791 * 175.44102 * 22 21 11 24 24 C 1.52999 * 109.47151 * 295.44122 * 22 21 11 25 25 H 1.08994 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47582 * 299.99954 * 1 2 3 27 27 H 1.09005 * 109.47262 * 60.00058 * 1 2 3 28 28 H 1.09000 * 109.46859 * 239.99906 * 2 1 3 29 29 H 1.08997 * 109.46988 * 119.99934 * 2 1 3 30 30 H 1.08994 * 109.46950 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.46950 * 299.99961 * 5 3 2 32 32 H 1.09007 * 109.46725 * 59.99553 * 5 3 2 33 33 H 1.08994 * 109.47826 * 181.84233 * 12 11 10 34 34 H 1.09001 * 109.46899 * 301.85025 * 12 11 10 35 35 H 0.97007 * 119.99433 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47182 * 284.75468 * 21 11 10 37 37 H 1.09002 * 109.46930 * 44.75119 * 21 11 10 38 38 H 1.08999 * 109.46936 * 55.44243 * 22 21 11 39 39 H 1.08999 * 109.47266 * 60.00343 * 23 22 21 40 40 H 1.09007 * 109.46898 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.47600 * 300.00069 * 23 22 21 42 42 H 1.08999 * 109.47300 * 299.99898 * 24 22 21 43 43 H 1.08995 * 109.46884 * 60.00235 * 24 22 21 44 44 H 1.08998 * 109.46960 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 7 3.5000 1.4443 -0.1203 7 7 4.4312 0.8968 0.7793 8 7 5.6014 1.1201 0.2867 9 7 5.5031 1.7499 -0.8281 10 6 4.2408 1.9672 -1.1247 11 7 3.7604 2.6127 -2.2504 12 6 3.2498 3.9483 -1.9139 13 6 4.3712 4.7902 -1.3616 14 1 5.3770 4.3980 -1.3325 15 6 4.1131 6.0612 -0.8937 16 7 5.0916 6.7956 -0.4114 17 14 2.3733 6.7394 -0.9437 18 1 1.6732 6.4000 0.3213 19 1 2.4216 8.2152 -1.1020 20 1 1.6419 6.1423 -2.0898 21 6 4.7921 2.6908 -3.2932 22 6 4.1405 3.0526 -4.6294 23 6 5.2258 3.2455 -5.6903 24 6 3.2006 1.9249 -5.0603 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9988 3.1541 1.3074 31 1 0.5488 2.1253 1.3969 32 1 2.0698 1.5875 2.1492 33 1 2.8486 4.4206 -2.8105 34 1 2.4613 3.8582 -1.1667 35 1 4.9100 7.6900 -0.0825 36 1 5.5217 3.4554 -3.0259 37 1 5.2924 1.7265 -3.3822 38 1 3.5727 3.9764 -4.5183 39 1 5.7937 2.3217 -5.8014 40 1 4.7616 3.5037 -6.6422 41 1 5.8954 4.0489 -5.3834 42 1 3.7684 1.0011 -5.1714 43 1 2.4274 1.7876 -4.3045 44 1 2.7367 2.1825 -6.0125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = 105.409158 kcal Electronic energy + Delta-G solvation = -23908.300262 eV Core-core repulsion = 20705.215350 eV Total energy + Delta-G solvation = -3203.084912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.24682 -38.05963 -36.90613 -34.44129 -32.70064 -32.34130 -30.49808 -29.24940 -27.88446 -26.81896 -25.39245 -25.06990 -23.25514 -22.34646 -20.86212 -20.15633 -19.14858 -17.36139 -16.81784 -16.12126 -15.90406 -15.14456 -14.76195 -14.50907 -14.06878 -13.78455 -13.61317 -13.31596 -12.70315 -12.61637 -12.52160 -12.41105 -12.26151 -11.97083 -11.88225 -11.80698 -11.57702 -11.37685 -11.29036 -11.12376 -10.86267 -10.75694 -10.67899 -10.60640 -10.35493 -10.13494 -10.09642 -9.85289 -9.66433 -9.44822 -8.78661 -7.94931 -6.26563 -4.30894 1.75067 2.34707 3.08709 3.09730 3.17279 3.20358 4.18183 4.22864 4.49286 4.76852 4.99035 5.02103 5.11239 5.23383 5.28055 5.28083 5.33185 5.44984 5.53637 5.65399 5.71610 5.83050 5.85251 5.89292 5.90485 6.01478 6.04271 6.11409 6.16303 6.22187 6.23192 6.30502 6.36499 6.45839 6.55238 6.60603 6.64825 6.70390 6.81738 7.12726 7.42177 7.65283 8.21260 8.80437 9.26782 9.30638 10.85596 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.010895 B = 0.008378 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.347052 B = 3341.409198 C = 4224.750009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.158 3.842 4 H 0.112 0.888 5 C -0.165 4.165 6 N -0.380 5.380 7 N -0.107 5.107 8 N -0.042 5.042 9 N -0.358 5.358 10 C 0.463 3.537 11 N -0.458 5.458 12 C 0.158 3.842 13 C -0.565 4.565 14 H 0.090 0.910 15 C 0.082 3.918 16 N -0.882 5.882 17 Si 0.869 3.131 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.075 3.925 22 C -0.092 4.092 23 C -0.143 4.143 24 C -0.138 4.138 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.026 0.974 35 H 0.267 0.733 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 -9.837 -4.922 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C 0.055 3.945 4 H 0.130 0.870 5 C -0.223 4.223 6 N -0.179 5.179 7 N -0.094 5.094 8 N -0.038 5.038 9 N -0.217 5.217 10 C 0.097 3.903 11 N -0.182 5.182 12 C 0.034 3.966 13 C -0.604 4.604 14 H 0.108 0.892 15 C -0.123 4.123 16 N -0.519 5.519 17 Si 0.695 3.305 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.052 4.052 22 C -0.111 4.111 23 C -0.201 4.201 24 C -0.195 4.195 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.479 -10.400 -4.230 14.693 hybrid contribution -1.170 1.366 0.013 1.799 sum -10.649 -9.034 -4.217 14.587 Atomic orbital electron populations 1.21784 0.94272 1.02233 1.02433 1.21851 0.96638 0.94778 1.03489 1.21552 0.73503 0.98244 1.01229 0.87015 1.22204 1.02082 1.01846 0.96184 1.51360 1.08570 1.41677 1.16323 1.82298 0.92894 1.21051 1.13202 1.77756 1.15079 1.08174 1.02832 1.74903 1.14989 1.20900 1.10860 1.23124 0.86053 0.93020 0.88081 1.59351 1.34239 1.21556 1.03070 1.20478 0.96314 0.82297 0.97542 1.21625 0.96086 0.99991 1.42662 0.89215 1.24888 0.96790 0.96564 0.94071 1.69910 1.31740 1.10272 1.39974 0.86965 0.85340 0.79043 0.79137 1.20054 1.20745 1.18678 1.22133 0.92248 1.02484 0.88340 1.21112 0.96795 0.99512 0.93706 1.21759 0.98615 1.01713 0.97966 1.21755 0.99560 0.97895 1.00327 0.92105 0.92003 0.92212 0.91327 0.90588 0.91289 0.90319 0.91058 0.92855 0.95573 0.92331 0.90362 0.91293 0.90371 0.92991 0.92909 0.92241 0.93466 0.92059 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.96 16 2 C -0.13 -1.51 5.72 -26.73 -0.15 -1.66 16 3 C 0.16 2.31 2.79 -67.93 -0.19 2.12 16 4 H 0.11 1.61 6.73 -51.93 -0.35 1.26 16 5 C -0.17 -2.29 9.21 37.16 0.34 -1.94 16 6 N -0.38 -7.21 3.32 -55.35 -0.18 -7.39 16 7 N -0.11 -2.21 13.85 60.35 0.84 -1.38 16 8 N -0.04 -0.96 13.38 60.35 0.81 -0.15 16 9 N -0.36 -8.25 11.14 30.09 0.34 -7.92 16 10 C 0.46 9.68 5.97 -320.42 -1.91 7.77 16 11 N -0.46 -8.83 3.91 -176.23 -0.69 -9.52 16 12 C 0.16 3.40 3.80 -4.98 -0.02 3.38 16 13 C -0.57 -14.90 8.20 -34.44 -0.28 -15.18 16 14 H 0.09 2.69 6.60 -52.49 -0.35 2.34 16 15 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 16 N -0.88 -26.11 13.96 55.43 0.77 -25.34 16 17 Si 0.87 19.77 27.39 -169.99 -4.66 15.12 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.26 -5.53 6.66 56.52 0.38 -5.15 16 21 C 0.07 1.37 3.67 -3.82 -0.01 1.35 16 22 C -0.09 -1.39 2.92 -90.62 -0.26 -1.66 16 23 C -0.14 -1.88 9.19 37.16 0.34 -1.54 16 24 C -0.14 -1.80 9.08 37.16 0.34 -1.46 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.83 6.57 -51.93 -0.34 0.49 16 32 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.05 1.11 5.86 -51.93 -0.30 0.81 16 34 H 0.03 0.56 5.93 -51.93 -0.31 0.25 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.08 1.68 6.25 -51.93 -0.32 1.35 16 37 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 38 H 0.08 1.28 6.53 -51.93 -0.34 0.94 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.83 7.74 -51.93 -0.40 0.43 16 44 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -30.32 347.98 -6.36 -36.68 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.27 Total: 2.30 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.55 Total: -7.64 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 1.88 Total: -51.70 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.66 Total: 15.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.32 -6.36 -36.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.085 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds