Wall clock time and date at job start Tue Mar 31 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47389 * 2 1 4 4 H 1.09005 * 109.46849 * 55.00286 * 3 2 1 5 5 C 1.52992 * 109.47381 * 295.00045 * 3 2 1 6 6 N 1.46497 * 109.47458 * 174.99522 * 3 2 1 7 7 N 1.40588 * 127.37835 * 59.48604 * 6 3 2 8 8 N 1.28917 * 106.81682 * 179.97438 * 7 6 3 9 9 N 1.28426 * 110.31356 * 359.97438 * 8 7 6 10 10 C 1.31473 * 110.50852 * 359.74814 * 9 8 7 11 11 N 1.38380 * 126.44053 * 180.25741 * 10 9 8 12 12 C 1.46902 * 110.99660 * 108.03555 * 11 10 9 13 13 C 1.50700 * 109.46752 * 165.37598 * 12 11 10 14 14 H 1.07998 * 120.00302 * 4.52575 * 13 12 11 15 15 C 1.37880 * 119.99842 * 184.53237 * 13 12 11 16 16 N 1.31513 * 119.99945 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99979 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47251 * 89.99959 * 17 15 13 19 19 H 1.48500 * 109.46956 * 210.00146 * 17 15 13 20 20 H 1.48504 * 109.46967 * 329.99725 * 17 15 13 21 21 C 1.46907 * 110.99635 * 344.08444 * 11 10 9 22 22 C 1.52992 * 109.46948 * 284.33899 * 21 11 10 23 23 C 1.52997 * 109.47009 * 175.19197 * 22 21 11 24 24 C 1.53002 * 109.47535 * 295.19216 * 22 21 11 25 25 H 1.09005 * 109.47177 * 179.97438 * 1 2 3 26 26 H 1.08990 * 109.47485 * 300.00108 * 1 2 3 27 27 H 1.09002 * 109.47097 * 60.00238 * 1 2 3 28 28 H 1.08999 * 109.46764 * 120.00441 * 2 1 3 29 29 H 1.08999 * 109.47461 * 239.99645 * 2 1 3 30 30 H 1.09007 * 109.47117 * 299.99445 * 5 3 2 31 31 H 1.08998 * 109.47339 * 59.99460 * 5 3 2 32 32 H 1.08998 * 109.47282 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.47099 * 285.36979 * 12 11 10 34 34 H 1.08997 * 109.47625 * 45.37277 * 12 11 10 35 35 H 0.97007 * 120.00010 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47350 * 44.34404 * 21 11 10 37 37 H 1.09001 * 109.46631 * 164.33823 * 21 11 10 38 38 H 1.09005 * 109.47325 * 55.19048 * 22 21 11 39 39 H 1.09006 * 109.47427 * 60.00269 * 23 22 21 40 40 H 1.09002 * 109.47221 * 180.02562 * 23 22 21 41 41 H 1.09002 * 109.47608 * 299.99792 * 23 22 21 42 42 H 1.09001 * 109.46724 * 304.97956 * 24 22 21 43 43 H 1.09006 * 109.47016 * 64.97459 * 24 22 21 44 44 H 1.08997 * 109.47398 * 184.98340 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1265 -1.3073 6 7 3.5000 1.4442 0.1205 7 7 4.4291 0.8502 -0.7516 8 7 5.6003 1.0933 -0.2707 9 7 5.5045 1.7780 0.8116 10 6 4.2436 2.0236 1.0912 11 7 3.7663 2.7373 2.1764 12 6 3.2463 4.0461 1.7582 13 6 2.4225 4.6385 2.8724 14 1 2.3574 4.1321 3.8241 15 6 1.7516 5.8271 2.6768 16 7 1.0323 6.3439 3.6489 17 14 1.8645 6.7034 1.0309 18 1 0.7741 6.2287 0.1415 19 1 1.7311 8.1676 1.2396 20 1 3.1782 6.4105 0.4033 21 6 4.8040 2.8874 3.2054 22 6 4.9723 1.5653 3.9566 23 6 6.1335 1.6849 4.9456 24 6 3.6848 1.2439 4.7182 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 2.0700 1.5875 -2.1491 31 1 0.5490 2.1252 -1.3969 32 1 1.9991 3.1540 -1.3074 33 1 4.0787 4.7113 1.5286 34 1 2.6240 3.9235 0.8718 35 1 0.5606 7.1804 3.5114 36 1 5.7477 3.1595 2.7327 37 1 4.5103 3.6688 3.9063 38 1 5.1821 0.7670 3.2446 39 1 5.9237 2.4832 5.6576 40 1 6.2537 0.7428 5.4805 41 1 7.0508 1.9138 4.4030 42 1 3.4272 2.0818 5.3660 43 1 2.8760 1.0716 4.0081 44 1 3.8341 0.3495 5.3231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119652267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:04 Heat of formation + Delta-G solvation = 104.602483 kcal Electronic energy + Delta-G solvation = -23835.966047 eV Core-core repulsion = 20632.846155 eV Total energy + Delta-G solvation = -3203.119892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.191 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.52987 -38.02861 -36.98708 -34.47069 -32.86056 -32.47892 -30.81055 -29.34176 -27.98263 -26.73732 -25.54630 -25.13489 -23.19179 -22.34115 -20.84467 -20.31644 -19.61475 -17.42641 -16.81939 -16.14107 -15.68961 -15.21833 -14.91974 -14.69150 -14.03856 -13.90395 -13.64293 -13.41291 -12.83333 -12.77262 -12.58354 -12.48934 -12.18356 -12.06490 -11.90574 -11.80544 -11.66826 -11.47458 -11.26843 -11.16078 -10.97665 -10.80203 -10.69466 -10.53972 -10.38781 -10.29942 -10.15380 -9.98937 -9.82969 -9.52385 -8.83553 -8.09302 -6.31393 -4.33006 1.48255 2.13733 2.75149 3.08129 3.18193 3.20662 4.00750 4.17784 4.42677 4.74483 4.89834 4.99560 5.04675 5.15309 5.18648 5.30556 5.35677 5.43842 5.49635 5.60293 5.66540 5.78707 5.84193 5.91423 5.94643 5.96174 6.00812 6.07984 6.10897 6.18955 6.23386 6.24572 6.30937 6.40461 6.46594 6.50612 6.55869 6.71244 6.82029 7.14874 7.24182 7.57387 8.27169 8.75363 8.97660 9.26482 10.80253 Molecular weight = 281.19amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.008550 C = 0.006200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.184716 B = 3274.067904 C = 4515.019051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.151 3.849 4 H 0.126 0.874 5 C -0.164 4.164 6 N -0.378 5.378 7 N -0.104 5.104 8 N -0.044 5.044 9 N -0.372 5.372 10 C 0.435 3.565 11 N -0.442 5.442 12 C 0.169 3.831 13 C -0.520 4.520 14 H 0.090 0.910 15 C 0.081 3.919 16 N -0.885 5.885 17 Si 0.864 3.136 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.071 3.929 22 C -0.090 4.090 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.010 0.990 34 H 0.027 0.973 35 H 0.268 0.732 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -9.362 -3.785 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.048 3.952 4 H 0.143 0.857 5 C -0.222 4.222 6 N -0.178 5.178 7 N -0.092 5.092 8 N -0.040 5.040 9 N -0.232 5.232 10 C 0.070 3.930 11 N -0.166 5.166 12 C 0.045 3.955 13 C -0.558 4.558 14 H 0.108 0.892 15 C -0.123 4.123 16 N -0.523 5.523 17 Si 0.690 3.310 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.056 4.056 22 C -0.109 4.109 23 C -0.200 4.200 24 C -0.194 4.194 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.933 -9.961 -4.281 10.882 hybrid contribution -0.411 1.266 -0.787 1.546 sum 0.522 -8.695 -5.068 10.078 Atomic orbital electron populations 1.21792 0.93996 1.02298 1.02769 1.21803 0.96920 0.94349 1.03364 1.21758 0.72707 0.98938 1.01784 0.85655 1.22209 1.02793 1.01082 0.96088 1.51518 1.08993 1.38428 1.18833 1.82347 0.92873 1.19927 1.14041 1.77780 1.15199 1.08025 1.02969 1.74850 1.15132 1.21117 1.12064 1.23684 0.86191 0.94599 0.88528 1.58905 1.33264 1.20502 1.03953 1.20454 0.95347 0.81672 0.98013 1.20801 1.29035 1.06661 0.99324 0.89160 1.24772 0.94527 0.96654 0.96373 1.69848 1.30530 1.19940 1.31946 0.87041 0.79139 0.79963 0.84841 1.19779 1.20558 1.19274 1.22317 0.91936 0.98658 0.92663 1.21071 0.95636 0.97224 0.96955 1.21754 0.97861 1.01421 0.98931 1.21722 0.97271 1.00483 0.99876 0.92074 0.91735 0.92055 0.91257 0.90761 0.91211 0.89769 0.91941 0.97235 0.95518 0.92173 0.92374 0.87675 0.92059 0.92446 0.93005 0.92722 0.92277 0.92173 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.13 -1.52 5.69 -26.74 -0.15 -1.67 16 3 C 0.15 2.20 2.56 -67.94 -0.17 2.03 16 4 H 0.13 2.00 7.06 -51.93 -0.37 1.64 16 5 C -0.16 -2.14 9.25 37.15 0.34 -1.80 16 6 N -0.38 -6.64 3.32 -55.36 -0.18 -6.83 16 7 N -0.10 -1.92 13.85 60.35 0.84 -1.09 16 8 N -0.04 -0.86 13.38 60.35 0.81 -0.06 16 9 N -0.37 -7.44 10.66 30.10 0.32 -7.12 16 10 C 0.44 8.38 6.28 -320.41 -2.01 6.37 16 11 N -0.44 -8.60 3.72 -176.22 -0.66 -9.25 16 12 C 0.17 3.71 3.42 -4.97 -0.02 3.69 16 13 C -0.52 -12.96 8.95 -34.44 -0.31 -13.27 16 14 H 0.09 2.42 7.71 -52.49 -0.40 2.02 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 16 N -0.89 -24.61 13.96 55.43 0.77 -23.84 16 17 Si 0.86 19.60 27.38 -169.99 -4.65 14.94 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.03 6.67 56.52 0.38 -5.65 16 21 C 0.07 1.28 3.95 -3.82 -0.02 1.27 16 22 C -0.09 -1.41 2.94 -90.62 -0.27 -1.68 16 23 C -0.14 -1.89 9.19 37.16 0.34 -1.55 16 24 C -0.14 -2.10 9.02 37.16 0.34 -1.77 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.90 6.56 -51.93 -0.34 0.56 16 32 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.01 0.23 7.44 -51.93 -0.39 -0.16 16 34 H 0.03 0.58 5.95 -51.93 -0.31 0.27 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.06 1.07 7.31 -51.93 -0.38 0.69 16 37 H 0.11 2.01 6.86 -51.93 -0.36 1.66 16 38 H 0.06 1.05 7.37 -51.93 -0.38 0.66 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.00 7.89 -51.93 -0.41 0.59 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -27.56 352.10 -6.60 -34.16 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.48 Total: 1.27 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.66 Total: -7.50 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 1.90 Total: -48.18 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.65 Total: 14.94 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.56 -6.60 -34.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119652267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.764 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds