Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47330 * 239.99855 * 2 1 3 5 5 C 1.52997 * 109.47201 * 300.00268 * 4 2 1 6 6 C 1.52999 * 109.47312 * 299.99869 * 5 4 2 7 7 H 1.09003 * 109.46772 * 300.00328 * 6 5 4 8 8 N 1.46902 * 109.47430 * 180.02562 * 6 5 4 9 9 C 1.46896 * 111.00087 * 155.00138 * 8 6 5 10 10 C 1.52997 * 109.47114 * 154.99792 * 9 8 6 11 11 C 1.53002 * 109.46817 * 60.00039 * 10 9 8 12 12 C 1.53000 * 109.47233 * 60.00194 * 11 10 9 13 13 C 1.50699 * 109.47083 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47256 * 90.00491 * 17 15 13 19 19 H 1.48506 * 109.46930 * 210.00332 * 17 15 13 20 20 H 1.48499 * 109.47104 * 330.00193 * 17 15 13 21 21 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 12 11 23 23 C 1.53002 * 109.46857 * 59.99711 * 6 5 4 24 24 C 1.52997 * 109.47395 * 300.00238 * 23 6 5 25 25 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47355 * 300.00605 * 1 2 3 27 27 H 1.09010 * 109.46724 * 59.99918 * 1 2 3 28 28 H 0.96695 * 114.00394 * 60.00334 * 3 2 1 29 29 H 1.09001 * 109.47586 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47222 * 60.00505 * 4 2 1 31 31 H 1.09005 * 109.47378 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.47311 * 60.00076 * 5 4 2 33 33 H 1.00899 * 110.99756 * 278.95499 * 8 6 5 34 34 H 1.09001 * 109.47267 * 34.99503 * 9 8 6 35 35 H 1.08993 * 109.47194 * 299.99521 * 10 9 8 36 36 H 1.09002 * 109.46695 * 179.97438 * 10 9 8 37 37 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 38 38 H 1.09004 * 109.46733 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 40 40 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47853 * 180.02562 * 21 12 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 21 12 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 21 12 44 44 H 1.09002 * 109.46716 * 60.00091 * 22 21 12 45 45 H 1.08995 * 109.46756 * 60.00412 * 23 6 5 46 46 H 1.08997 * 109.46944 * 180.02562 * 23 6 5 47 47 H 1.09001 * 109.47072 * 300.00495 * 24 23 6 48 48 H 1.08997 * 109.47105 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0399 -2.8850 0.0000 7 1 3.1299 -2.8850 0.0001 8 7 1.5507 -4.2702 -0.0003 9 6 2.4345 -5.1408 0.7864 10 6 1.6432 -6.3496 1.2898 11 6 1.0897 -7.1299 0.0958 12 6 2.2479 -7.6082 -0.7821 13 6 1.7027 -8.3772 -1.9578 14 1 0.6368 -8.5118 -2.0676 15 6 2.5647 -8.9090 -2.8933 16 7 3.8628 -8.7455 -2.7593 17 14 1.8888 -9.8617 -4.3511 18 1 1.6370 -8.9286 -5.4785 19 1 2.8747 -10.8901 -4.7704 20 1 0.6175 -10.5240 -3.9631 21 6 3.0392 -6.3993 -1.2855 22 6 3.5927 -5.6189 -0.0916 23 6 1.5299 -2.1637 1.2493 24 6 2.0399 -0.7212 1.2493 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.7210 1.8653 0.7650 29 1 3.1300 -0.7209 -1.2494 30 1 1.6768 -0.2074 -2.1392 31 1 1.8930 -2.6775 -2.1394 32 1 0.4401 -2.1637 -1.2493 33 1 0.6013 -4.3184 0.3378 34 1 2.8289 -4.5848 1.6370 35 1 0.8182 -6.0090 1.9153 36 1 2.2992 -6.9958 1.8732 37 1 0.4340 -6.4840 -0.4879 38 1 0.5264 -7.9914 0.4545 39 1 2.9037 -8.2542 -0.1984 40 1 4.4692 -9.1200 -3.4173 41 1 3.8640 -6.7398 -1.9114 42 1 2.3834 -5.7533 -1.8693 43 1 4.1561 -4.7574 -0.4502 44 1 4.2485 -6.2649 0.4921 45 1 0.4400 -2.1637 1.2492 46 1 1.8935 -2.6773 2.1392 47 1 3.1299 -0.7213 1.2493 48 1 1.6769 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -86.143138 kcal Electronic energy + Delta-G solvation = -23699.589934 eV Core-core repulsion = 20559.446283 eV Total energy + Delta-G solvation = -3140.143651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00258 -38.13904 -35.93550 -33.58283 -31.96775 -30.93493 -29.72622 -29.59429 -28.07800 -25.96319 -24.29700 -22.85579 -21.78991 -21.22229 -20.40849 -19.04051 -18.04595 -17.10191 -16.20206 -15.88212 -15.11077 -14.82378 -14.73028 -14.60754 -14.16135 -13.73469 -13.22253 -12.90089 -12.84306 -12.59265 -12.35326 -12.20309 -12.01862 -11.92402 -11.64262 -11.57995 -11.38945 -11.18930 -11.14371 -10.89057 -10.71837 -10.57809 -10.39155 -10.24309 -10.08374 -9.98834 -9.84605 -9.65427 -9.17446 -8.78059 -8.45943 -8.13344 -7.83734 -5.84514 -3.89635 3.37865 3.44290 3.47399 3.95268 4.40485 4.54181 4.56791 4.59163 4.87518 4.96069 5.10437 5.19884 5.36995 5.42488 5.44817 5.48193 5.53907 5.54248 5.61763 5.67672 5.75218 5.80242 5.86000 5.96212 6.01494 6.04700 6.15824 6.24236 6.37925 6.39623 6.43175 6.51402 6.56170 6.66006 6.84677 6.94061 7.10301 7.35033 7.47947 7.52259 7.61976 7.75287 7.83576 7.92498 8.26037 8.36459 8.65278 9.14623 9.73764 11.20647 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.003925 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.172381 B = 7131.606279 C = 7545.941468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.129 3.871 3 O -0.564 6.564 4 C -0.103 4.103 5 C -0.105 4.105 6 C 0.088 3.912 7 H 0.076 0.924 8 N -0.664 5.664 9 C 0.095 3.905 10 C -0.118 4.118 11 C -0.101 4.101 12 C 0.052 3.948 13 C -0.506 4.506 14 H 0.051 0.949 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.886 3.114 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.276 1.276 21 C -0.096 4.096 22 C -0.106 4.106 23 C -0.148 4.148 24 C -0.137 4.137 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.372 0.628 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.334 0.666 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.037 0.963 39 H 0.016 0.984 40 H 0.257 0.743 41 H 0.080 0.920 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 16.953 8.825 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 O -0.369 6.369 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.022 4.022 7 H 0.095 0.905 8 N -0.294 5.294 9 C -0.014 4.014 10 C -0.156 4.156 11 C -0.139 4.139 12 C 0.034 3.966 13 C -0.545 4.545 14 H 0.069 0.931 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.714 3.286 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.187 4.187 24 C -0.176 4.176 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.219 0.781 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.153 0.847 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.084 0.916 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.902 16.504 7.570 18.572 hybrid contribution -0.782 -0.047 0.756 1.089 sum -4.684 16.458 8.326 19.029 Atomic orbital electron populations 1.22578 0.95972 1.03245 1.01972 1.21228 0.92585 0.81662 0.95637 1.86562 1.77369 1.23652 1.49335 1.21452 1.01436 0.95227 0.96019 1.21533 1.00926 0.92928 0.98948 1.21619 0.99772 0.87981 0.92850 0.90542 1.60536 1.05095 1.05705 1.58096 1.21499 0.94283 0.92528 0.93088 1.21745 0.98375 0.96854 0.98648 1.21532 0.99848 0.97360 0.95167 1.18598 0.91706 0.92940 0.93389 1.21242 0.92761 1.32610 1.07861 0.93072 1.24945 0.94868 0.96347 0.97845 1.69896 1.01596 1.45867 1.35719 0.86703 0.78664 0.79841 0.83385 1.20828 1.21459 1.20123 1.21417 1.01004 0.95743 0.95283 1.21621 0.95290 0.98612 0.98845 1.22333 1.01131 0.95361 0.99874 1.22139 1.01658 0.96356 0.97444 0.90651 0.92835 0.91981 0.78145 0.91342 0.91321 0.90217 0.91687 0.84735 0.95800 0.94116 0.92293 0.92512 0.94385 0.96563 0.93327 0.90150 0.93323 0.94404 0.93381 0.91555 0.92040 0.91247 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.12 37.16 0.30 -1.27 16 2 C 0.13 1.27 1.15 -90.62 -0.10 1.17 16 3 O -0.56 -5.72 12.98 -35.23 -0.46 -6.17 16 4 C -0.10 -1.16 5.10 -26.74 -0.14 -1.29 16 5 C -0.11 -1.27 5.25 -26.73 -0.14 -1.41 16 6 C 0.09 1.11 2.28 -67.71 -0.15 0.96 16 7 H 0.08 1.08 7.11 -51.93 -0.37 0.71 16 8 N -0.66 -9.88 4.57 -99.74 -0.46 -10.34 16 9 C 0.10 1.55 2.63 -67.71 -0.18 1.38 16 10 C -0.12 -2.01 5.30 -26.73 -0.14 -2.15 16 11 C -0.10 -2.09 4.98 -26.73 -0.13 -2.23 16 12 C 0.05 1.30 2.10 -91.77 -0.19 1.11 16 13 C -0.51 -14.12 8.56 -34.44 -0.29 -14.42 16 14 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.10 -2.29 4.82 -26.73 -0.13 -2.42 16 22 C -0.11 -2.05 5.52 -26.73 -0.15 -2.20 16 23 C -0.15 -1.54 4.88 -26.73 -0.13 -1.67 16 24 C -0.14 -1.31 5.07 -26.73 -0.14 -1.44 16 25 H 0.07 0.67 4.81 -51.93 -0.25 0.42 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.37 2.31 9.05 45.56 0.41 2.73 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 33 H 0.33 4.64 7.93 -39.29 -0.31 4.33 16 34 H 0.02 0.36 7.11 -51.93 -0.37 -0.01 16 35 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.17 7.48 -51.93 -0.39 0.78 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 42 H 0.05 1.18 7.60 -51.93 -0.39 0.79 16 43 H 0.04 0.70 7.42 -51.93 -0.39 0.32 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.65 6.42 -51.93 -0.33 0.32 16 46 H 0.06 0.67 7.43 -51.93 -0.39 0.28 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -29.29 349.41 -9.89 -39.18 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.04 Total: 4.96 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: -1.81 Total: -24.29 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.17 Total: -35.63 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.46 Total: -6.17 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.29 -9.89 -39.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.965 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds