Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42899 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47330 * 239.99855 * 2 1 3 5 5 C 1.52997 * 109.47201 * 300.00268 * 4 2 1 6 6 C 1.52999 * 109.47312 * 299.99869 * 5 4 2 7 7 H 1.09003 * 109.46772 * 300.00328 * 6 5 4 8 8 N 1.46902 * 109.47430 * 180.02562 * 6 5 4 9 9 C 1.46896 * 111.00087 * 155.00138 * 8 6 5 10 10 C 1.52997 * 109.47114 * 154.99792 * 9 8 6 11 11 C 1.53002 * 109.46817 * 60.00039 * 10 9 8 12 12 C 1.53000 * 109.47233 * 60.00194 * 11 10 9 13 13 C 1.50699 * 109.47083 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99792 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99902 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00126 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99745 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47256 * 90.00491 * 17 15 13 19 19 H 1.48506 * 109.46930 * 210.00332 * 17 15 13 20 20 H 1.48499 * 109.47104 * 330.00193 * 17 15 13 21 21 C 1.52997 * 109.47060 * 299.99657 * 12 11 10 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 12 11 23 23 C 1.53002 * 109.46857 * 59.99711 * 6 5 4 24 24 C 1.52997 * 109.47395 * 300.00238 * 23 6 5 25 25 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47355 * 300.00605 * 1 2 3 27 27 H 1.09010 * 109.46724 * 59.99918 * 1 2 3 28 28 H 0.96695 * 114.00394 * 60.00334 * 3 2 1 29 29 H 1.09001 * 109.47586 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47222 * 60.00505 * 4 2 1 31 31 H 1.09005 * 109.47378 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.47311 * 60.00076 * 5 4 2 33 33 H 1.00899 * 110.99756 * 278.95499 * 8 6 5 34 34 H 1.09001 * 109.47267 * 34.99503 * 9 8 6 35 35 H 1.08993 * 109.47194 * 299.99521 * 10 9 8 36 36 H 1.09002 * 109.46695 * 179.97438 * 10 9 8 37 37 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 38 38 H 1.09004 * 109.46733 * 179.97438 * 11 10 9 39 39 H 1.09002 * 109.47398 * 59.99826 * 12 11 10 40 40 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47853 * 180.02562 * 21 12 11 42 42 H 1.09002 * 109.47153 * 300.00319 * 21 12 11 43 43 H 1.09000 * 109.47486 * 180.02562 * 22 21 12 44 44 H 1.09002 * 109.46716 * 60.00091 * 22 21 12 45 45 H 1.08995 * 109.46756 * 60.00412 * 23 6 5 46 46 H 1.08997 * 109.46944 * 180.02562 * 23 6 5 47 47 H 1.09001 * 109.47072 * 300.00495 * 24 23 6 48 48 H 1.08997 * 109.47105 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0399 -2.8850 0.0000 7 1 3.1299 -2.8850 0.0001 8 7 1.5507 -4.2702 -0.0003 9 6 2.4345 -5.1408 0.7864 10 6 1.6432 -6.3496 1.2898 11 6 1.0897 -7.1299 0.0958 12 6 2.2479 -7.6082 -0.7821 13 6 1.7027 -8.3772 -1.9578 14 1 0.6368 -8.5118 -2.0676 15 6 2.5647 -8.9090 -2.8933 16 7 3.8628 -8.7455 -2.7593 17 14 1.8888 -9.8617 -4.3511 18 1 1.6370 -8.9286 -5.4785 19 1 2.8747 -10.8901 -4.7704 20 1 0.6175 -10.5240 -3.9631 21 6 3.0392 -6.3993 -1.2855 22 6 3.5927 -5.6189 -0.0916 23 6 1.5299 -2.1637 1.2493 24 6 2.0399 -0.7212 1.2493 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.7210 1.8653 0.7650 29 1 3.1300 -0.7209 -1.2494 30 1 1.6768 -0.2074 -2.1392 31 1 1.8930 -2.6775 -2.1394 32 1 0.4401 -2.1637 -1.2493 33 1 0.6013 -4.3184 0.3378 34 1 2.8289 -4.5848 1.6370 35 1 0.8182 -6.0090 1.9153 36 1 2.2992 -6.9958 1.8732 37 1 0.4340 -6.4840 -0.4879 38 1 0.5264 -7.9914 0.4545 39 1 2.9037 -8.2542 -0.1984 40 1 4.4692 -9.1200 -3.4173 41 1 3.8640 -6.7398 -1.9114 42 1 2.3834 -5.7533 -1.8693 43 1 4.1561 -4.7574 -0.4502 44 1 4.2485 -6.2649 0.4921 45 1 0.4400 -2.1637 1.2492 46 1 1.8935 -2.6773 2.1392 47 1 3.1299 -0.7213 1.2493 48 1 1.6769 -0.2075 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324873.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -104.558579 kcal Electronic energy + Delta-G solvation = -23700.388487 eV Core-core repulsion = 20559.446283 eV Total energy + Delta-G solvation = -3140.942204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93178 -39.50697 -37.03422 -35.17060 -33.53984 -31.79336 -31.30145 -31.03059 -29.25519 -27.07728 -26.11196 -23.72140 -23.26520 -22.45773 -22.02958 -20.01492 -19.55863 -18.32684 -17.88548 -16.83869 -16.57483 -16.05797 -16.01208 -15.74408 -15.53058 -14.82126 -14.50714 -14.35155 -14.07020 -13.99246 -13.60730 -13.27156 -13.16385 -13.09243 -12.97887 -12.78245 -12.68759 -12.55291 -12.51403 -12.41796 -12.05263 -11.90507 -11.85480 -11.76088 -11.55453 -11.39843 -11.07074 -11.00317 -10.65253 -10.62502 -10.35615 -10.23300 -9.01057 -8.00431 -6.13837 1.41537 1.42273 1.52045 2.47144 3.14893 3.25200 3.42561 3.73807 3.78391 4.03015 4.10867 4.13596 4.17347 4.30271 4.35919 4.41174 4.49765 4.56067 4.68291 4.73231 4.77848 4.84423 4.87800 4.95890 4.96286 4.99879 5.06802 5.07064 5.14721 5.17355 5.21526 5.23604 5.24282 5.29921 5.38982 5.47270 5.55879 5.56304 5.67430 5.73591 5.88072 6.21341 6.32405 6.38102 6.54226 6.74739 6.93450 7.00783 7.53210 9.02616 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025988 B = 0.003925 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.172381 B = 7131.606279 C = 7545.941468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 O -0.580 6.580 4 C -0.103 4.103 5 C -0.099 4.099 6 C 0.091 3.909 7 H 0.059 0.941 8 N -0.679 5.679 9 C 0.106 3.894 10 C -0.111 4.111 11 C -0.093 4.093 12 C 0.048 3.952 13 C -0.528 4.528 14 H 0.048 0.952 15 C 0.010 3.990 16 N -0.918 5.918 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.268 1.268 21 C -0.082 4.082 22 C -0.101 4.101 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.390 0.610 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.344 0.656 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.034 0.966 39 H -0.019 1.019 40 H 0.256 0.744 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 18.424 10.293 22.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.091 3.909 3 O -0.388 6.388 4 C -0.141 4.141 5 C -0.137 4.137 6 C -0.019 4.019 7 H 0.077 0.923 8 N -0.310 5.310 9 C -0.003 4.003 10 C -0.149 4.149 11 C -0.130 4.130 12 C 0.030 3.970 13 C -0.567 4.567 14 H 0.066 0.934 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.774 3.226 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.193 1.193 21 C -0.120 4.120 22 C -0.139 4.139 23 C -0.177 4.177 24 C -0.171 4.171 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.239 0.761 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.164 0.836 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.053 0.947 39 H -0.001 1.001 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.621 17.992 9.055 20.911 hybrid contribution -0.219 -0.493 0.255 0.597 sum -5.841 17.498 9.310 20.663 Atomic orbital electron populations 1.22535 0.94756 1.03375 1.02718 1.21144 0.93367 0.81601 0.94748 1.86520 1.77753 1.23842 1.50710 1.21412 1.00617 0.94907 0.97200 1.21430 1.01347 0.93183 0.97708 1.21579 0.98774 0.87193 0.94358 0.92274 1.60400 1.05471 1.06826 1.58317 1.21292 0.93190 0.92840 0.93012 1.21681 0.99463 0.96464 0.97294 1.21359 0.98006 0.97708 0.95944 1.18585 0.92821 0.92599 0.92986 1.21661 0.92713 1.33200 1.09101 0.93414 1.25719 0.95146 0.97368 1.00541 1.70054 1.02665 1.46578 1.36549 0.85711 0.78230 0.78542 0.80083 1.20339 1.21100 1.19303 1.21123 0.99124 0.95484 0.96287 1.21522 0.96693 0.98041 0.97632 1.22218 1.01834 0.95465 0.98217 1.22095 1.00989 0.95921 0.98113 0.90748 0.90966 0.92449 0.76082 0.92665 0.91595 0.92847 0.90741 0.83598 0.93311 0.90459 0.92606 0.92441 0.94727 1.00059 0.93441 0.94273 0.94490 0.93870 0.94161 0.90225 0.91778 0.92377 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.12 71.98 0.58 -1.97 16 2 C 0.13 2.30 1.15 -10.80 -0.01 2.28 16 3 O -0.58 -10.48 12.98 -148.98 -1.93 -12.42 16 4 C -0.10 -2.25 5.10 30.59 0.16 -2.09 16 5 C -0.10 -2.32 5.25 30.59 0.16 -2.16 16 6 C 0.09 2.16 2.28 44.92 0.10 2.26 16 7 H 0.06 1.62 7.11 -2.39 -0.02 1.60 16 8 N -0.68 -19.02 4.57 -469.46 -2.15 -21.17 16 9 C 0.11 3.27 2.63 44.92 0.12 3.39 16 10 C -0.11 -3.53 5.30 30.59 0.16 -3.37 16 11 C -0.09 -3.76 4.98 30.60 0.15 -3.61 16 12 C 0.05 2.49 2.10 -11.54 -0.02 2.46 16 13 C -0.53 -30.18 8.56 25.60 0.22 -29.96 16 14 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 15 C 0.01 0.58 5.30 84.65 0.45 1.03 16 16 N -0.92 -55.22 11.32 21.45 0.24 -54.97 16 17 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 18 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.08 -4.02 4.82 30.59 0.15 -3.87 16 22 C -0.10 -3.94 5.52 30.60 0.17 -3.77 16 23 C -0.14 -2.43 4.88 30.59 0.15 -2.29 16 24 C -0.13 -2.14 5.07 30.59 0.16 -1.98 16 25 H 0.07 1.09 4.81 -2.39 -0.01 1.08 16 26 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.39 3.72 9.05 -74.06 -0.67 3.05 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.60 6.43 -2.39 -0.02 1.59 16 33 H 0.34 8.55 7.93 -89.69 -0.71 7.83 16 34 H 0.05 1.32 7.11 -2.39 -0.02 1.30 16 35 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.06 2.32 7.48 -2.39 -0.02 2.30 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.04 2.22 6.07 -2.39 -0.01 2.21 16 42 H 0.04 1.85 7.60 -2.39 -0.02 1.83 16 43 H 0.04 1.62 7.42 -2.39 -0.02 1.60 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.23 6.42 -2.39 -0.02 1.22 16 46 H 0.06 1.14 7.43 -2.39 -0.02 1.12 16 47 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -65.08 349.41 0.43 -64.65 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.45 Total: 20.33 kcal Atomic # 6 Polarization: -46.33 SS G_CDS: 2.69 Total: -43.65 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -1.90 Total: -76.14 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.93 Total: -12.42 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.08 0.43 -64.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324873.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.908 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds