Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42905 * 109.47439 * 2 1 4 4 C 1.53007 * 109.47344 * 239.99996 * 2 1 3 5 5 C 1.53005 * 109.47042 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.46957 * 60.00147 * 5 4 2 7 7 H 1.09001 * 109.47440 * 59.99946 * 6 5 4 8 8 N 1.46907 * 109.46864 * 179.97438 * 6 5 4 9 9 C 1.46893 * 111.00338 * 274.31464 * 8 6 5 10 10 C 1.53002 * 109.47301 * 274.87975 * 9 8 6 11 11 C 1.53000 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.46886 * 60.00127 * 11 10 9 13 13 C 1.50699 * 109.47441 * 59.99795 * 12 11 10 14 14 H 1.07996 * 119.99829 * 355.93977 * 13 12 11 15 15 C 1.37878 * 119.99947 * 175.94154 * 13 12 11 16 16 N 1.31510 * 120.00433 * 357.99044 * 15 13 12 17 17 Si 1.86799 * 119.99964 * 177.99316 * 15 13 12 18 18 H 1.48506 * 109.47032 * 265.01609 * 17 15 13 19 19 H 1.48508 * 109.47318 * 25.01430 * 17 15 13 20 20 H 1.48497 * 109.47313 * 145.01439 * 17 15 13 21 21 C 1.52995 * 109.47347 * 299.99501 * 12 11 10 22 22 C 1.52992 * 109.47624 * 154.87523 * 9 8 6 23 23 C 1.52997 * 109.47400 * 299.99524 * 6 5 4 24 24 C 1.53002 * 109.46966 * 60.00538 * 23 6 5 25 25 H 1.08998 * 109.46977 * 299.99760 * 1 2 3 26 26 H 1.09003 * 109.47079 * 60.00174 * 1 2 3 27 27 H 1.09000 * 109.47135 * 179.97438 * 1 2 3 28 28 H 0.96698 * 113.99698 * 300.00030 * 3 2 1 29 29 H 1.08993 * 109.46825 * 300.00201 * 4 2 1 30 30 H 1.08998 * 109.46515 * 60.00098 * 4 2 1 31 31 H 1.09001 * 109.47089 * 299.99879 * 5 4 2 32 32 H 1.08998 * 109.46675 * 180.02562 * 5 4 2 33 33 H 1.00899 * 110.99854 * 38.27548 * 8 6 5 34 34 H 1.09002 * 109.47004 * 34.87424 * 9 8 6 35 35 H 1.08995 * 109.47073 * 59.99587 * 10 9 8 36 36 H 1.09002 * 109.46641 * 299.99671 * 10 9 8 37 37 H 1.08997 * 109.47663 * 300.00029 * 11 10 9 38 38 H 1.08999 * 109.47048 * 179.97438 * 11 10 9 39 39 H 1.09007 * 109.47232 * 179.97438 * 12 11 10 40 40 H 0.96998 * 120.00528 * 180.02562 * 16 15 13 41 41 H 1.08995 * 109.47968 * 180.02562 * 21 12 11 42 42 H 1.09001 * 109.47156 * 300.00772 * 21 12 11 43 43 H 1.09003 * 109.47189 * 300.00445 * 22 9 8 44 44 H 1.09002 * 109.47011 * 59.99905 * 22 9 8 45 45 H 1.09003 * 109.47448 * 180.02562 * 23 6 5 46 46 H 1.09000 * 109.47538 * 300.00192 * 23 6 5 47 47 H 1.09001 * 109.47135 * 60.00029 * 24 23 6 48 48 H 1.09005 * 109.47020 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5701 -0.7218 -1.2489 6 6 4.0794 -1.4434 0.0003 7 1 3.7157 -2.4709 0.0001 8 7 5.5485 -1.4444 0.0003 9 6 6.0742 -2.5774 -0.7727 10 6 6.1416 -3.8174 0.1211 11 6 6.6886 -4.9976 -0.6843 12 6 8.0908 -4.6602 -1.1950 13 6 8.9996 -4.3867 -0.0244 14 1 8.6009 -4.3829 0.9793 15 6 10.3399 -4.1413 -0.2348 16 7 10.8332 -4.1849 -1.4531 17 14 11.4554 -3.7470 1.2108 18 1 11.5719 -2.2740 1.3587 19 1 10.8803 -4.3252 2.4520 20 1 12.8006 -4.3284 0.9710 21 6 8.0235 -3.4204 -2.0889 22 6 7.4765 -2.2399 -1.2831 23 6 3.5695 -0.7222 1.2495 24 6 2.0394 -0.7217 1.2492 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 1.8653 -0.7650 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.9337 0.3058 -1.2487 32 1 3.9334 -1.2352 -2.1391 33 1 5.9107 -0.5696 -0.3483 34 1 5.4172 -2.7754 -1.6197 35 1 5.1426 -4.0579 0.4847 36 1 6.7986 -3.6193 0.9681 37 1 6.0314 -5.1954 -1.5311 38 1 6.7370 -5.8808 -0.0474 39 1 8.4808 -5.5012 -1.7685 40 1 11.7762 -4.0127 -1.6010 41 1 9.0223 -3.1802 -2.4532 42 1 7.3662 -3.6182 -2.9356 43 1 7.4285 -1.3565 -1.9199 44 1 8.1335 -2.0419 -0.4362 45 1 3.9327 -1.2360 2.1396 46 1 3.9332 0.3054 1.2499 47 1 1.6758 -1.7492 1.2490 48 1 1.6761 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324874.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -90.665286 kcal Electronic energy + Delta-G solvation = -23600.212722 eV Core-core repulsion = 20459.872976 eV Total energy + Delta-G solvation = -3140.339746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83934 -38.04047 -35.84949 -33.47749 -32.01606 -30.88289 -30.59187 -29.52587 -27.81257 -25.34514 -24.26612 -22.86971 -21.74181 -21.05172 -20.22725 -19.82051 -18.57697 -16.63819 -15.90039 -15.59196 -15.13224 -14.79642 -14.60932 -14.39355 -14.00070 -13.72841 -13.53715 -13.01839 -12.87769 -12.69091 -12.49127 -12.27412 -11.99904 -11.85667 -11.69481 -11.41068 -11.18077 -11.06840 -11.00956 -10.98435 -10.81580 -10.49140 -10.42711 -10.30127 -10.12966 -9.99736 -9.87919 -9.53212 -9.13324 -8.75803 -8.57771 -8.21905 -7.86507 -5.90463 -3.92190 3.36679 3.43851 3.47709 4.01423 4.45438 4.50184 4.52736 4.66662 4.75594 4.98653 5.12505 5.29240 5.37717 5.42166 5.43277 5.48032 5.54657 5.65991 5.71024 5.74013 5.79318 5.83519 5.92898 5.96761 6.11147 6.14561 6.20683 6.34098 6.41530 6.47890 6.55043 6.60360 6.62364 6.77551 6.79688 6.91814 7.20996 7.29470 7.42332 7.50840 7.56073 7.74255 7.80378 7.90874 8.00617 8.17272 8.57429 9.10957 9.70684 11.17649 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.003759 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.243103 B = 7447.165790 C = 7668.664823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.129 3.871 3 O -0.555 6.555 4 C -0.139 4.139 5 C -0.144 4.144 6 C 0.091 3.909 7 H 0.072 0.928 8 N -0.681 5.681 9 C 0.097 3.903 10 C -0.091 4.091 11 C -0.108 4.108 12 C 0.044 3.956 13 C -0.497 4.497 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.884 3.116 18 H -0.282 1.282 19 H -0.275 1.275 20 H -0.289 1.289 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.102 4.102 24 C -0.103 4.103 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.371 0.629 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.336 0.664 34 H 0.026 0.974 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.257 0.743 41 H 0.082 0.918 42 H 0.013 0.987 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.101 8.368 0.355 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 O -0.360 6.360 4 C -0.177 4.177 5 C -0.183 4.183 6 C -0.020 4.020 7 H 0.090 0.910 8 N -0.311 5.311 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.146 4.146 12 C 0.025 3.975 13 C -0.535 4.535 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.215 1.215 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.217 0.783 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.154 0.846 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.100 0.900 42 H 0.031 0.969 43 H 0.047 0.953 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.585 7.849 1.441 20.226 hybrid contribution 0.152 0.719 -0.844 1.119 sum -18.433 8.568 0.597 20.336 Atomic orbital electron populations 1.22496 0.96207 1.02635 1.02251 1.21216 0.91720 0.82561 0.95627 1.86582 1.77167 1.23132 1.49095 1.22155 0.96857 1.01267 0.97452 1.22203 0.95057 1.01607 0.99426 1.21566 0.88471 0.98721 0.93228 0.91012 1.60615 1.05475 1.06257 1.58716 1.21525 0.95631 0.90892 0.93136 1.21392 0.98607 0.93773 0.99157 1.21573 0.98720 0.96688 0.97616 1.18683 0.90146 0.93755 0.94891 1.21176 0.92591 1.46805 0.92940 0.92539 1.24940 0.98063 0.95788 0.95250 1.69914 1.13367 1.50360 1.19733 0.86708 0.80267 0.78467 0.83348 1.20858 1.19954 1.21519 1.21440 1.00285 0.96333 0.95906 1.21563 0.94911 0.97335 1.00221 1.21413 0.93243 1.01388 0.97999 1.21530 0.97035 0.99454 0.96114 0.91877 0.92562 0.91639 0.78298 0.91194 0.92146 0.91350 0.92281 0.84605 0.95551 0.95025 0.90595 0.95247 0.93509 0.95585 0.93292 0.90003 0.96862 0.95331 0.90244 0.91423 0.91289 0.90932 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 8.81 37.15 0.33 -0.99 16 2 C 0.13 1.19 0.98 -90.62 -0.09 1.10 16 3 O -0.55 -5.48 11.64 -35.23 -0.41 -5.89 16 4 C -0.14 -1.32 4.92 -26.73 -0.13 -1.45 16 5 C -0.14 -1.69 5.01 -26.73 -0.13 -1.82 16 6 C 0.09 1.21 2.27 -67.71 -0.15 1.06 16 7 H 0.07 1.02 7.12 -51.93 -0.37 0.65 16 8 N -0.68 -10.85 6.06 -99.75 -0.60 -11.46 16 9 C 0.10 1.76 2.30 -67.72 -0.16 1.61 16 10 C -0.09 -1.79 5.18 -26.73 -0.14 -1.93 16 11 C -0.11 -2.28 5.42 -26.73 -0.14 -2.42 16 12 C 0.04 1.08 2.49 -91.77 -0.23 0.85 16 13 C -0.50 -13.37 6.64 -34.44 -0.23 -13.60 16 14 H 0.06 1.53 6.56 -52.49 -0.34 1.18 16 15 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.64 11.71 55.43 0.65 -24.99 16 17 Si 0.88 21.54 29.54 -169.99 -5.02 16.51 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 C -0.10 -2.36 5.28 -26.71 -0.14 -2.50 16 22 C -0.10 -2.12 4.97 -26.71 -0.13 -2.26 16 23 C -0.10 -1.27 5.38 -26.73 -0.14 -1.42 16 24 C -0.10 -1.06 4.94 -26.73 -0.13 -1.19 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.37 2.38 9.05 45.56 0.41 2.79 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.82 7.67 -51.93 -0.40 0.43 16 32 H 0.06 0.75 7.48 -51.93 -0.39 0.36 16 33 H 0.34 5.18 8.07 -39.29 -0.32 4.86 16 34 H 0.03 0.48 7.16 -51.93 -0.37 0.11 16 35 H 0.03 0.56 7.44 -51.93 -0.39 0.18 16 36 H 0.08 1.66 6.54 -51.93 -0.34 1.32 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.08 2.15 6.48 -51.93 -0.34 1.81 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 44 H 0.08 1.85 7.22 -51.93 -0.37 1.48 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -28.48 352.80 -10.04 -38.51 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -8.24 Total: 5.40 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: -1.72 Total: -23.40 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.04 Total: -36.45 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.41 Total: -5.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.48 -10.04 -38.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324874.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.152 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds