Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47267 * 239.99441 * 3 2 1 5 5 H 1.48503 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47110 * 119.99709 * 3 2 1 7 7 C 1.37877 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99291 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47114 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47090 * 300.00292 * 11 10 9 13 13 N 1.46899 * 109.47382 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00292 * 154.99649 * 13 12 11 15 15 C 1.53002 * 109.47138 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.49319 * 54.97348 * 16 15 14 18 18 C 1.53098 * 109.47586 * 175.00176 * 16 15 14 19 19 C 1.53177 * 109.21356 * 177.55854 * 18 16 15 20 20 C 1.53180 * 109.03525 * 303.11207 * 19 18 16 21 21 C 1.53097 * 109.21119 * 56.88485 * 20 19 18 22 22 O 1.42898 * 109.41405 * 302.42599 * 21 20 19 23 23 C 1.52998 * 109.47439 * 59.99599 * 12 11 10 24 24 C 1.52999 * 109.47281 * 299.99949 * 9 7 2 25 25 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47200 * 60.00513 * 9 7 2 27 27 H 1.09002 * 109.47214 * 60.00136 * 10 9 7 28 28 H 1.08998 * 109.47297 * 300.00042 * 10 9 7 29 29 H 1.09000 * 109.47162 * 179.97438 * 11 10 9 30 30 H 1.08997 * 109.46844 * 59.99496 * 11 10 9 31 31 H 1.09002 * 109.46895 * 299.99741 * 12 11 10 32 32 H 1.00903 * 110.99451 * 31.03887 * 13 12 11 33 33 H 1.08999 * 109.47213 * 60.00116 * 14 13 12 34 34 H 1.08999 * 109.47006 * 300.00206 * 14 13 12 35 35 H 1.09003 * 109.46690 * 60.00440 * 15 14 13 36 36 H 1.08998 * 109.46947 * 300.00326 * 15 14 13 37 37 H 1.09002 * 109.52244 * 297.49793 * 18 16 15 38 38 H 1.09004 * 109.52508 * 57.62322 * 18 16 15 39 39 H 1.09005 * 109.54330 * 62.92184 * 19 18 16 40 40 H 1.09005 * 109.54560 * 183.18386 * 19 18 16 41 41 H 1.09002 * 109.46996 * 296.98297 * 20 19 18 42 42 H 1.09005 * 109.58122 * 176.85328 * 20 19 18 43 43 H 1.09007 * 109.47760 * 182.43925 * 21 20 19 44 44 H 1.08997 * 109.48022 * 62.41203 * 21 20 19 45 45 H 1.09002 * 109.46961 * 60.00183 * 23 12 11 46 46 H 1.08998 * 109.47355 * 180.02562 * 23 12 11 47 47 H 1.09002 * 109.47252 * 300.00246 * 24 9 7 48 48 H 1.09000 * 109.47108 * 60.00372 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 0.5994 -5.0679 1.2494 13 7 -0.1356 -6.3399 1.2486 14 6 -0.5039 -6.7360 2.6143 15 6 -1.2665 -8.0618 2.5726 16 6 -1.6496 -8.4747 3.9951 17 1 -2.2066 -7.6674 4.4706 18 6 -2.5187 -9.7340 3.9446 19 6 -2.8479 -10.1769 5.3735 20 6 -1.5412 -10.4014 6.1406 21 6 -0.7098 -9.1163 6.1063 22 8 -0.4655 -8.7447 4.7482 23 6 -0.3949 -3.9051 1.2482 24 6 0.3710 -2.5798 1.2494 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5570 -0.8897 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6046 -0.8877 29 1 2.1888 -5.8156 0.0016 30 1 0.8547 -5.0449 -0.8894 31 1 1.2250 -5.0101 2.1401 32 1 0.3977 -7.0652 0.7930 33 1 -1.1367 -5.9671 3.0575 34 1 0.3985 -6.8542 3.2141 35 1 -0.6340 -8.8309 2.1293 36 1 -2.1689 -7.9432 1.9728 37 1 -3.4426 -9.5176 3.4083 38 1 -1.9778 -10.5296 3.4322 39 1 -3.4327 -9.4023 5.8698 40 1 -3.4192 -11.1049 5.3452 41 1 -0.9801 -11.2108 5.6735 42 1 -1.7650 -10.6628 7.1749 43 1 0.2402 -9.2843 6.6138 44 1 -1.2545 -8.3174 6.6094 45 1 -1.0206 -3.9629 0.3575 46 1 -1.0222 -3.9624 2.1377 47 1 0.9973 -2.5219 2.1397 48 1 -0.3374 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -89.520621 kcal Electronic energy + Delta-G solvation = -22486.649325 eV Core-core repulsion = 19346.359215 eV Total energy + Delta-G solvation = -3140.290110 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.69195 -38.10730 -35.37201 -33.87332 -33.17467 -31.87533 -29.65845 -29.43445 -27.43549 -25.01242 -24.12729 -23.07181 -21.82987 -20.97851 -20.53768 -20.19280 -18.59366 -16.68989 -16.29813 -16.24166 -15.30238 -14.99879 -14.87966 -14.58885 -14.26419 -14.18570 -13.71704 -13.37319 -12.98805 -12.88619 -12.73588 -12.32638 -12.19329 -11.78884 -11.64136 -11.42922 -11.36643 -11.14006 -11.01285 -10.96280 -10.82597 -10.64930 -10.53516 -10.36121 -10.18979 -10.08051 -9.75671 -9.60568 -9.25082 -8.82775 -8.59025 -8.22042 -8.02019 -5.90371 -3.96489 3.35959 3.40460 3.43190 3.58538 4.23551 4.49481 4.49637 4.56805 4.62611 4.71398 4.92732 5.12389 5.15219 5.24220 5.35769 5.39091 5.40971 5.47163 5.52446 5.53589 5.62825 5.70026 5.72608 5.74801 5.85357 5.96734 6.00632 6.14435 6.17595 6.27280 6.43862 6.51259 6.53088 6.70804 6.79743 6.83912 7.03788 7.06940 7.23307 7.34810 7.50335 7.65657 7.73520 7.84299 8.12091 8.26013 8.55957 9.07672 9.67542 11.15036 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.002724 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.523872 B =10276.288146 C =10451.525727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.092 3.908 13 N -0.690 5.690 14 C 0.062 3.938 15 C -0.108 4.108 16 C 0.091 3.909 17 H 0.059 0.941 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.377 6.377 23 C -0.100 4.100 24 C -0.109 4.109 25 H 0.259 0.741 26 H 0.025 0.975 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.332 0.668 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.030 -20.326 10.124 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.320 5.320 14 C -0.067 4.067 15 C -0.146 4.146 16 C 0.033 3.967 17 H 0.077 0.923 18 C -0.187 4.187 19 C -0.161 4.161 20 C -0.194 4.194 21 C -0.017 4.017 22 O -0.296 6.296 23 C -0.139 4.139 24 C -0.148 4.148 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.609 -19.883 9.912 22.914 hybrid contribution 1.025 0.543 0.615 1.313 sum -4.584 -19.340 10.527 22.491 Atomic orbital electron populations 1.69873 1.05810 1.26294 1.50963 1.24966 0.94828 0.98911 0.95321 0.86725 0.79642 0.83479 0.78513 1.20382 1.21374 1.20409 1.21216 0.92796 0.90891 1.50207 0.92954 1.18646 0.92582 0.91314 0.94390 1.21600 0.98598 0.94247 0.99977 1.21714 0.97658 0.98296 0.97644 1.21596 0.93904 0.89079 0.97138 1.60610 1.48664 1.05486 1.17273 1.21901 0.98776 0.95792 0.90259 1.21597 1.01661 0.97469 0.93823 1.22130 0.86288 0.95516 0.92780 0.92333 1.22206 1.00544 0.98786 0.97213 1.21593 0.97149 1.01608 0.95724 1.22196 0.97140 0.99185 1.00916 1.22539 1.00241 0.95095 0.83810 1.87966 1.30660 1.88631 1.22341 1.21599 0.97179 0.94819 1.00263 1.21631 0.99555 0.95107 0.98503 0.93091 0.95655 0.93630 0.93418 0.94031 0.91840 0.94641 0.85042 0.91317 0.94854 0.91426 0.89734 0.90762 0.91069 0.91841 0.91564 0.91152 0.91083 0.89038 0.93293 0.92369 0.94438 0.95187 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.32 55.43 0.63 -25.20 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -14.34 8.56 -34.44 -0.29 -14.63 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 10 C -0.11 -2.26 5.14 -26.72 -0.14 -2.40 16 11 C -0.12 -2.08 5.19 -26.73 -0.14 -2.22 16 12 C 0.09 1.64 2.49 -67.71 -0.17 1.47 16 13 N -0.69 -10.43 6.31 -106.73 -0.67 -11.10 16 14 C 0.06 0.85 5.38 -3.83 -0.02 0.83 16 15 C -0.11 -1.18 5.18 -26.73 -0.14 -1.32 16 16 C 0.09 0.92 2.64 -26.68 -0.07 0.85 16 17 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 18 C -0.15 -1.23 5.42 -26.59 -0.14 -1.38 16 19 C -0.12 -0.89 6.03 -26.55 -0.16 -1.05 16 20 C -0.16 -1.12 6.13 -26.59 -0.16 -1.29 16 21 C 0.06 0.52 6.84 37.21 0.25 0.77 16 22 O -0.38 -4.32 9.94 -35.23 -0.35 -4.68 16 23 C -0.10 -2.05 5.43 -26.70 -0.14 -2.19 16 24 C -0.11 -2.64 4.98 -26.70 -0.13 -2.77 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.66 7.80 -51.93 -0.41 0.26 16 32 H 0.33 4.55 8.35 -39.29 -0.33 4.22 16 33 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 34 H 0.03 0.49 7.74 -51.93 -0.40 0.08 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.04 0.72 7.45 -51.93 -0.39 0.34 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 LS Contribution 362.70 15.07 5.47 5.47 Total: -1.00 -28.98 362.70 -11.07 -40.05 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -9.37 Total: 1.54 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.75 Total: -22.67 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.05 Total: -36.30 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.35 Total: -4.68 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.98 -11.07 -40.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.473 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds