Wall clock time and date at job start Tue Mar 31 2020 05:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47267 * 239.99441 * 3 2 1 5 5 H 1.48503 * 109.47190 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47110 * 119.99709 * 3 2 1 7 7 C 1.37877 * 120.00553 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00179 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99291 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46697 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47114 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47090 * 300.00292 * 11 10 9 13 13 N 1.46899 * 109.47382 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00292 * 154.99649 * 13 12 11 15 15 C 1.53002 * 109.47138 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.08999 * 109.49319 * 54.97348 * 16 15 14 18 18 C 1.53098 * 109.47586 * 175.00176 * 16 15 14 19 19 C 1.53177 * 109.21356 * 177.55854 * 18 16 15 20 20 C 1.53180 * 109.03525 * 303.11207 * 19 18 16 21 21 C 1.53097 * 109.21119 * 56.88485 * 20 19 18 22 22 O 1.42898 * 109.41405 * 302.42599 * 21 20 19 23 23 C 1.52998 * 109.47439 * 59.99599 * 12 11 10 24 24 C 1.52999 * 109.47281 * 299.99949 * 9 7 2 25 25 H 0.97000 * 119.99986 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47200 * 60.00513 * 9 7 2 27 27 H 1.09002 * 109.47214 * 60.00136 * 10 9 7 28 28 H 1.08998 * 109.47297 * 300.00042 * 10 9 7 29 29 H 1.09000 * 109.47162 * 179.97438 * 11 10 9 30 30 H 1.08997 * 109.46844 * 59.99496 * 11 10 9 31 31 H 1.09002 * 109.46895 * 299.99741 * 12 11 10 32 32 H 1.00903 * 110.99451 * 31.03887 * 13 12 11 33 33 H 1.08999 * 109.47213 * 60.00116 * 14 13 12 34 34 H 1.08999 * 109.47006 * 300.00206 * 14 13 12 35 35 H 1.09003 * 109.46690 * 60.00440 * 15 14 13 36 36 H 1.08998 * 109.46947 * 300.00326 * 15 14 13 37 37 H 1.09002 * 109.52244 * 297.49793 * 18 16 15 38 38 H 1.09004 * 109.52508 * 57.62322 * 18 16 15 39 39 H 1.09005 * 109.54330 * 62.92184 * 19 18 16 40 40 H 1.09005 * 109.54560 * 183.18386 * 19 18 16 41 41 H 1.09002 * 109.46996 * 296.98297 * 20 19 18 42 42 H 1.09005 * 109.58122 * 176.85328 * 20 19 18 43 43 H 1.09007 * 109.47760 * 182.43925 * 21 20 19 44 44 H 1.08997 * 109.48022 * 62.41203 * 21 20 19 45 45 H 1.09002 * 109.46961 * 60.00183 * 23 12 11 46 46 H 1.08998 * 109.47355 * 180.02562 * 23 12 11 47 47 H 1.09002 * 109.47252 * 300.00246 * 24 9 7 48 48 H 1.09000 * 109.47108 * 60.00372 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 0.5994 -5.0679 1.2494 13 7 -0.1356 -6.3399 1.2486 14 6 -0.5039 -6.7360 2.6143 15 6 -1.2665 -8.0618 2.5726 16 6 -1.6496 -8.4747 3.9951 17 1 -2.2066 -7.6674 4.4706 18 6 -2.5187 -9.7340 3.9446 19 6 -2.8479 -10.1769 5.3735 20 6 -1.5412 -10.4014 6.1406 21 6 -0.7098 -9.1163 6.1063 22 8 -0.4655 -8.7447 4.7482 23 6 -0.3949 -3.9051 1.2482 24 6 0.3710 -2.5798 1.2494 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5570 -0.8897 27 1 2.8714 -3.6038 0.8923 28 1 2.8728 -3.6046 -0.8877 29 1 2.1888 -5.8156 0.0016 30 1 0.8547 -5.0449 -0.8894 31 1 1.2250 -5.0101 2.1401 32 1 0.3977 -7.0652 0.7930 33 1 -1.1367 -5.9671 3.0575 34 1 0.3985 -6.8542 3.2141 35 1 -0.6340 -8.8309 2.1293 36 1 -2.1689 -7.9432 1.9728 37 1 -3.4426 -9.5176 3.4083 38 1 -1.9778 -10.5296 3.4322 39 1 -3.4327 -9.4023 5.8698 40 1 -3.4192 -11.1049 5.3452 41 1 -0.9801 -11.2108 5.6735 42 1 -1.7650 -10.6628 7.1749 43 1 0.2402 -9.2843 6.6138 44 1 -1.2545 -8.3174 6.6094 45 1 -1.0206 -3.9629 0.3575 46 1 -1.0222 -3.9624 2.1377 47 1 0.9973 -2.5219 2.1397 48 1 -0.3374 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324972.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:40 Heat of formation + Delta-G solvation = -105.661502 kcal Electronic energy + Delta-G solvation = -22487.349246 eV Core-core repulsion = 19346.359215 eV Total energy + Delta-G solvation = -3140.990031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44308 -39.67127 -36.76664 -34.72501 -34.52692 -33.31213 -31.38954 -30.76482 -28.74952 -26.35207 -25.35861 -24.09843 -23.32926 -22.10372 -21.95106 -21.08725 -20.35320 -18.38479 -17.49992 -17.02873 -16.72912 -16.35930 -15.93185 -15.71311 -15.47914 -15.19923 -14.90440 -14.66300 -14.56964 -14.29857 -13.94690 -13.58454 -13.35456 -13.02985 -12.98437 -12.89466 -12.68891 -12.49512 -12.39883 -12.18188 -12.02058 -11.96613 -11.82328 -11.79053 -11.63611 -11.52842 -11.20062 -11.10807 -10.73142 -10.50631 -10.36006 -10.30736 -9.31140 -8.05413 -6.19842 1.41306 1.42686 1.50305 2.44480 2.86476 3.14993 3.21080 3.81501 3.90785 3.96237 3.96561 4.03075 4.08901 4.19699 4.35617 4.39306 4.44316 4.48704 4.56647 4.61533 4.70445 4.71478 4.81207 4.86375 4.87747 4.88993 4.93267 4.99401 5.01263 5.04213 5.11428 5.14750 5.18216 5.21222 5.27882 5.36742 5.40936 5.43709 5.50410 5.63032 5.72253 6.05589 6.15197 6.22668 6.34539 6.43474 6.59667 6.93090 7.47888 8.98314 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035277 B = 0.002724 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.523872 B =10276.288146 C =10451.525727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.100 4.100 11 C -0.107 4.107 12 C 0.101 3.899 13 N -0.687 5.687 14 C 0.066 3.934 15 C -0.099 4.099 16 C 0.090 3.910 17 H 0.054 0.946 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.153 4.153 21 C 0.052 3.948 22 O -0.401 6.401 23 C -0.090 4.090 24 C -0.101 4.101 25 H 0.260 0.740 26 H -0.007 1.007 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.346 0.654 33 H 0.056 0.944 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.022 0.978 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.764 -21.935 10.710 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.138 4.138 11 C -0.145 4.145 12 C -0.008 4.008 13 N -0.318 5.318 14 C -0.063 4.063 15 C -0.137 4.137 16 C 0.032 3.968 17 H 0.072 0.928 18 C -0.184 4.184 19 C -0.161 4.161 20 C -0.190 4.190 21 C -0.024 4.024 22 O -0.321 6.321 23 C -0.129 4.129 24 C -0.139 4.139 25 H 0.069 0.931 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.165 0.835 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.338 -21.515 10.498 24.527 hybrid contribution 0.935 1.057 0.446 1.480 sum -4.404 -20.458 10.944 23.616 Atomic orbital electron populations 1.70024 1.07162 1.27034 1.51449 1.25763 0.95685 1.02382 0.94967 0.85706 0.78453 0.79264 0.78797 1.19639 1.20955 1.19728 1.21620 0.93005 0.92455 1.50373 0.93105 1.18625 0.93065 0.92342 0.93298 1.21471 0.97866 0.94444 1.00051 1.21619 0.97937 0.97413 0.97494 1.21340 0.93061 0.89490 0.96918 1.60486 1.48215 1.04777 1.18360 1.21887 0.98490 0.96870 0.89063 1.21524 1.01534 0.95879 0.94755 1.22143 0.86269 0.96410 0.92021 0.92770 1.22172 1.00431 0.97651 0.98155 1.21622 0.97289 1.02264 0.94960 1.22169 0.96800 0.98139 1.01936 1.22723 1.01092 0.95942 0.82669 1.87922 1.31558 1.88943 1.23658 1.21430 0.97311 0.94110 1.00023 1.21420 0.98763 0.96143 0.97621 0.93134 0.98922 0.93619 0.93211 0.90733 0.92152 0.95051 0.83546 0.92499 0.95695 0.90997 0.89116 0.89863 0.91245 0.91651 0.90292 0.91470 0.89445 0.88330 0.93139 0.93549 0.93639 0.95901 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.57 11.32 21.45 0.24 -54.33 16 2 C 0.01 0.59 5.30 84.66 0.45 1.04 16 3 Si 0.95 44.66 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.54 -30.53 8.56 25.60 0.22 -30.31 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.05 2.34 2.10 -11.54 -0.02 2.31 16 10 C -0.10 -4.22 5.14 30.60 0.16 -4.07 16 11 C -0.11 -3.68 5.19 30.60 0.16 -3.52 16 12 C 0.10 3.51 2.49 44.91 0.11 3.62 16 13 N -0.69 -19.55 6.31 -491.58 -3.10 -22.65 16 14 C 0.07 1.72 5.38 86.30 0.46 2.18 16 15 C -0.10 -2.01 5.18 30.59 0.16 -1.85 16 16 C 0.09 1.70 2.64 30.63 0.08 1.78 16 17 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 18 C -0.15 -2.13 5.42 30.69 0.17 -1.96 16 19 C -0.12 -1.52 6.03 30.71 0.19 -1.33 16 20 C -0.15 -1.90 6.13 30.69 0.19 -1.71 16 21 C 0.05 0.83 6.84 72.01 0.49 1.33 16 22 O -0.40 -8.76 9.94 -148.98 -1.48 -10.24 16 23 C -0.09 -3.71 5.43 30.61 0.17 -3.55 16 24 C -0.10 -5.00 4.98 30.61 0.15 -4.85 16 25 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.03 1.13 7.80 -2.39 -0.02 1.11 16 32 H 0.35 8.54 8.35 -89.69 -0.75 7.79 16 33 H 0.06 1.61 7.44 -2.39 -0.02 1.59 16 34 H 0.02 0.70 7.74 -2.39 -0.02 0.68 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 44 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.04 1.77 7.45 -2.39 -0.02 1.75 16 47 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 Total: -1.00 -62.90 362.70 0.96 -61.95 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.14 Total: 19.47 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 3.13 Total: -40.89 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.86 Total: -76.98 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.48 Total: -10.24 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -62.90 0.96 -61.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324972.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.716 kcal (2) G-P(sol) polarization free energy of solvation -62.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds