Wall clock time and date at job start Tue Mar 31 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47259 * 299.99888 * 3 2 1 6 6 H 1.48498 * 109.47152 * 59.99819 * 3 2 1 7 7 C 1.37878 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99466 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46664 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46881 * 299.99990 * 11 10 9 13 13 N 1.46910 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.46889 * 110.99872 * 155.00061 * 13 12 11 15 15 C 1.53007 * 109.47042 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.47093 * 64.99742 * 15 14 13 17 17 C 1.42898 * 114.00017 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48190 * 93.24436 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67678 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 C 1.53002 * 109.47463 * 60.00499 * 12 11 10 23 23 C 1.52995 * 109.47018 * 300.00122 * 9 7 2 24 24 H 0.96995 * 119.99603 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46694 * 60.00601 * 9 7 2 26 26 H 1.08998 * 109.47359 * 60.00324 * 10 9 7 27 27 H 1.09000 * 109.47307 * 299.99945 * 10 9 7 28 28 H 1.08998 * 109.47067 * 180.02562 * 11 10 9 29 29 H 1.08998 * 109.47106 * 60.00000 * 11 10 9 30 30 H 1.08998 * 109.47259 * 299.99916 * 12 11 10 31 31 H 1.00895 * 110.99654 * 278.95455 * 13 12 11 32 32 H 1.09002 * 109.47275 * 60.00219 * 14 13 12 33 33 H 1.08998 * 109.47622 * 299.99686 * 14 13 12 34 34 H 1.08999 * 109.47003 * 305.00028 * 15 14 13 35 35 H 1.08999 * 109.47000 * 185.00222 * 15 14 13 36 36 H 1.09002 * 110.43427 * 330.70321 * 17 16 15 37 37 H 1.08996 * 110.75388 * 275.06031 * 18 17 16 38 38 H 1.08993 * 110.76071 * 38.44257 * 18 17 16 39 39 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 40 40 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 41 41 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 42 42 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 43 43 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 44 44 H 1.08996 * 110.07773 * 119.30576 * 21 20 19 45 45 H 1.08998 * 109.47359 * 59.99478 * 22 12 11 46 46 H 1.09000 * 109.47307 * 179.97438 * 22 12 11 47 47 H 1.08998 * 109.47259 * 299.99829 * 23 9 7 48 48 H 1.08998 * 109.47096 * 60.00144 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 0.6003 -5.0673 1.2523 13 7 -0.1339 -6.3399 1.2531 14 6 -0.5009 -6.7349 2.6194 15 6 -1.2616 -8.0619 2.5797 16 8 -0.3938 -9.0944 2.1079 17 6 -1.0093 -10.3819 2.0330 18 6 -1.5841 -10.6262 0.6155 19 6 -1.6338 -12.1756 0.5332 20 6 -0.3538 -12.6354 1.2611 21 6 0.0432 -11.4950 2.2147 22 6 -0.3941 -3.9045 1.2512 23 6 0.3719 -2.5793 1.2513 24 1 -0.4849 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 2.8720 -3.6036 0.8927 27 1 2.8720 -3.6051 -0.8873 28 1 2.1885 -5.8156 0.0045 29 1 0.8539 -5.0454 -0.8869 30 1 1.2266 -5.0091 2.1424 31 1 -0.9488 -6.2875 0.6606 32 1 -1.1340 -5.9659 3.0623 33 1 0.4019 -6.8519 3.2188 34 1 -2.1161 -7.9709 1.9092 35 1 -1.6110 -8.3105 3.5818 36 1 -1.7942 -10.4727 2.7839 37 1 -2.5831 -10.1998 0.5251 38 1 -0.9190 -10.2199 -0.1464 39 1 -1.6198 -12.5027 -0.5066 40 1 -2.5196 -12.5581 1.0405 41 1 0.4431 -12.8129 0.5390 42 1 -0.5524 -13.5446 1.8287 43 1 1.0329 -11.1189 1.9554 44 1 0.0372 -11.8498 3.2453 45 1 -1.0204 -3.9627 0.3611 46 1 -1.0213 -3.9619 2.1408 47 1 0.9989 -2.5210 2.1410 48 1 -0.3364 -1.7508 1.2510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:01 Heat of formation + Delta-G solvation = -84.588747 kcal Electronic energy + Delta-G solvation = -22385.744225 eV Core-core repulsion = 19245.667978 eV Total energy + Delta-G solvation = -3140.076247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.10411 -38.15544 -36.34514 -34.56824 -32.34368 -29.92909 -29.55121 -28.92071 -27.83888 -26.67796 -24.07724 -22.05054 -21.43094 -20.92150 -20.50483 -20.44964 -18.73496 -17.22298 -16.27867 -16.01998 -15.56383 -15.26286 -14.78505 -14.44653 -13.91013 -13.69965 -13.48455 -13.35205 -13.06192 -12.84922 -12.52590 -12.21918 -12.13449 -11.66413 -11.48421 -11.39334 -11.34045 -11.28227 -11.15106 -10.94908 -10.78857 -10.68426 -10.61709 -10.37199 -10.20536 -10.07475 -9.86966 -9.49060 -9.33014 -8.93393 -8.61690 -8.28380 -7.85826 -5.93643 -3.99369 3.31606 3.39701 3.44068 3.61117 4.35241 4.40734 4.44148 4.48947 4.67770 4.96669 5.12632 5.15489 5.24717 5.27431 5.34982 5.35466 5.40531 5.43766 5.51198 5.59043 5.65400 5.73513 5.76920 5.80638 5.90500 5.99033 6.00327 6.05071 6.09672 6.25541 6.35958 6.44540 6.48451 6.70650 6.75465 6.89922 6.99980 7.19151 7.26253 7.29354 7.47632 7.59101 7.75498 7.80567 8.08619 8.20913 8.53546 9.05511 9.65066 11.11792 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.044969 B = 0.002643 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.506538 B =10592.050939 C =10759.205495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.109 4.109 11 C -0.099 4.099 12 C 0.090 3.910 13 N -0.679 5.679 14 C 0.060 3.940 15 C 0.067 3.933 16 O -0.360 6.360 17 C 0.081 3.919 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.143 4.143 23 C -0.105 4.105 24 H 0.258 0.742 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.335 0.665 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.036 0.964 47 H 0.032 0.968 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -21.912 4.836 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.147 4.147 11 C -0.137 4.137 12 C -0.019 4.019 13 N -0.309 5.309 14 C -0.070 4.070 15 C -0.010 4.010 16 O -0.278 6.278 17 C 0.023 3.977 18 C -0.183 4.183 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.182 4.182 23 C -0.144 4.144 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.357 -22.160 4.788 23.087 hybrid contribution -0.692 1.587 0.341 1.764 sum -5.050 -20.574 5.129 21.796 Atomic orbital electron populations 1.69891 1.05850 1.26061 1.51349 1.24978 0.94833 0.98990 0.95342 0.86602 0.80228 0.84084 0.77474 1.19827 1.21121 1.21159 1.21313 0.92943 0.90833 1.49702 0.92755 1.18660 0.92671 0.91607 0.94109 1.21632 0.98601 0.94430 1.00020 1.21470 0.97889 0.97806 0.96575 1.21638 0.95014 0.86118 0.99106 1.60638 1.28390 1.32793 1.09051 1.21960 0.99694 0.93245 0.92073 1.22565 0.92925 0.88276 0.97259 1.88076 1.37347 1.15741 1.86660 1.22970 0.94671 0.84085 0.96002 1.23040 1.01238 0.95740 0.98327 1.22334 0.97739 0.95529 1.00593 1.22077 0.97862 0.97732 0.98328 1.22164 1.00072 0.94272 0.99493 1.22301 0.98141 0.98155 0.99621 1.21554 0.99441 0.94576 0.98801 0.93245 0.95812 0.93585 0.93449 0.93039 0.92909 0.91321 0.84793 0.93907 0.90461 0.93669 0.93460 0.92219 0.91738 0.90071 0.91476 0.91779 0.91519 0.91846 0.90324 0.91617 0.92869 0.94483 0.94951 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.16 8.56 -34.44 -0.29 -14.46 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.01 16 10 C -0.11 -2.32 5.14 -26.73 -0.14 -2.46 16 11 C -0.10 -1.84 5.53 -26.73 -0.15 -1.99 16 12 C 0.09 1.57 2.47 -67.71 -0.17 1.41 16 13 N -0.68 -10.22 6.20 -106.72 -0.66 -10.88 16 14 C 0.06 0.78 5.87 -3.83 -0.02 0.75 16 15 C 0.07 0.75 6.07 37.16 0.23 0.97 16 16 O -0.36 -4.55 10.00 -35.23 -0.35 -4.90 16 17 C 0.08 0.80 3.33 -25.07 -0.08 0.72 16 18 C -0.15 -1.35 6.65 -24.55 -0.16 -1.51 16 19 C -0.12 -0.93 6.84 -24.88 -0.17 -1.10 16 20 C -0.12 -0.91 6.80 -25.62 -0.17 -1.09 16 21 C -0.12 -1.09 6.56 -25.62 -0.17 -1.26 16 22 C -0.14 -2.74 5.18 -26.70 -0.14 -2.88 16 23 C -0.11 -2.48 4.98 -26.70 -0.13 -2.61 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.24 7.80 -51.93 -0.40 0.83 16 31 H 0.33 4.83 8.47 -39.29 -0.33 4.50 16 32 H 0.04 0.54 7.44 -51.93 -0.39 0.15 16 33 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 1.04 8.13 -51.93 -0.42 0.62 16 46 H 0.04 0.66 7.45 -51.93 -0.39 0.27 16 47 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -28.72 367.21 -11.11 -39.83 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -9.37 Total: 1.92 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -1.86 Total: -22.93 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.03 Total: -35.93 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.35 Total: -4.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.72 -11.11 -39.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.763 kcal (2) G-P(sol) polarization free energy of solvation -28.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds