Wall clock time and date at job start Tue Mar 31 2020 05:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00235 * 2 1 4 4 H 1.48502 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47259 * 299.99888 * 3 2 1 6 6 H 1.48498 * 109.47152 * 59.99819 * 3 2 1 7 7 C 1.37878 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99466 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46667 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.46664 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.46881 * 299.99990 * 11 10 9 13 13 N 1.46910 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.46889 * 110.99872 * 155.00061 * 13 12 11 15 15 C 1.53007 * 109.47042 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.47093 * 64.99742 * 15 14 13 17 17 C 1.42898 * 114.00017 * 179.97438 * 16 15 14 18 18 C 1.54894 * 110.48190 * 93.24436 * 17 16 15 19 19 C 1.55238 * 102.58338 * 156.67678 * 18 17 16 20 20 C 1.54266 * 104.23333 * 322.08174 * 19 18 17 21 21 C 1.53869 * 106.59800 * 23.61579 * 20 19 18 22 22 C 1.53002 * 109.47463 * 60.00499 * 12 11 10 23 23 C 1.52995 * 109.47018 * 300.00122 * 9 7 2 24 24 H 0.96995 * 119.99603 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46694 * 60.00601 * 9 7 2 26 26 H 1.08998 * 109.47359 * 60.00324 * 10 9 7 27 27 H 1.09000 * 109.47307 * 299.99945 * 10 9 7 28 28 H 1.08998 * 109.47067 * 180.02562 * 11 10 9 29 29 H 1.08998 * 109.47106 * 60.00000 * 11 10 9 30 30 H 1.08998 * 109.47259 * 299.99916 * 12 11 10 31 31 H 1.00895 * 110.99654 * 278.95455 * 13 12 11 32 32 H 1.09002 * 109.47275 * 60.00219 * 14 13 12 33 33 H 1.08998 * 109.47622 * 299.99686 * 14 13 12 34 34 H 1.08999 * 109.47003 * 305.00028 * 15 14 13 35 35 H 1.08999 * 109.47000 * 185.00222 * 15 14 13 36 36 H 1.09002 * 110.43427 * 330.70321 * 17 16 15 37 37 H 1.08996 * 110.75388 * 275.06031 * 18 17 16 38 38 H 1.08993 * 110.76071 * 38.44257 * 18 17 16 39 39 H 1.09005 * 110.46917 * 203.39204 * 19 18 17 40 40 H 1.09007 * 110.58541 * 80.83124 * 19 18 17 41 41 H 1.08999 * 110.03060 * 264.32313 * 20 19 18 42 42 H 1.09006 * 110.06829 * 142.91691 * 20 19 18 43 43 H 1.09001 * 110.02983 * 240.71432 * 21 20 19 44 44 H 1.08996 * 110.07773 * 119.30576 * 21 20 19 45 45 H 1.08998 * 109.47359 * 59.99478 * 22 12 11 46 46 H 1.09000 * 109.47307 * 179.97438 * 22 12 11 47 47 H 1.08998 * 109.47259 * 299.99829 * 23 9 7 48 48 H 1.08998 * 109.47096 * 60.00144 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4803 -4.9871 0.0033 12 6 0.6003 -5.0673 1.2523 13 7 -0.1339 -6.3399 1.2531 14 6 -0.5009 -6.7349 2.6194 15 6 -1.2616 -8.0619 2.5797 16 8 -0.3938 -9.0944 2.1079 17 6 -1.0093 -10.3819 2.0330 18 6 -1.5841 -10.6262 0.6155 19 6 -1.6338 -12.1756 0.5332 20 6 -0.3538 -12.6354 1.2611 21 6 0.0432 -11.4950 2.2147 22 6 -0.3941 -3.9045 1.2512 23 6 0.3719 -2.5793 1.2513 24 1 -0.4849 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 2.8720 -3.6036 0.8927 27 1 2.8720 -3.6051 -0.8873 28 1 2.1885 -5.8156 0.0045 29 1 0.8539 -5.0454 -0.8869 30 1 1.2266 -5.0091 2.1424 31 1 -0.9488 -6.2875 0.6606 32 1 -1.1340 -5.9659 3.0623 33 1 0.4019 -6.8519 3.2188 34 1 -2.1161 -7.9709 1.9092 35 1 -1.6110 -8.3105 3.5818 36 1 -1.7942 -10.4727 2.7839 37 1 -2.5831 -10.1998 0.5251 38 1 -0.9190 -10.2199 -0.1464 39 1 -1.6198 -12.5027 -0.5066 40 1 -2.5196 -12.5581 1.0405 41 1 0.4431 -12.8129 0.5390 42 1 -0.5524 -13.5446 1.8287 43 1 1.0329 -11.1189 1.9554 44 1 0.0372 -11.8498 3.2453 45 1 -1.0204 -3.9627 0.3611 46 1 -1.0213 -3.9619 2.1408 47 1 0.9989 -2.5210 2.1410 48 1 -0.3364 -1.7508 1.2510 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328459.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:01 Heat of formation + Delta-G solvation = -100.186027 kcal Electronic energy + Delta-G solvation = -22386.420574 eV Core-core repulsion = 19245.667978 eV Total energy + Delta-G solvation = -3140.752596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.01765 -39.55646 -37.28776 -35.98886 -34.19143 -31.40013 -31.20970 -29.59313 -28.94762 -27.81132 -25.91346 -23.32140 -22.92343 -22.13509 -21.60003 -21.10984 -20.46829 -18.38986 -18.05639 -16.95599 -16.61018 -16.44752 -16.29008 -15.70769 -15.05951 -14.93212 -14.84863 -14.39346 -14.33289 -14.21823 -13.93927 -13.80581 -13.39393 -12.95038 -12.91066 -12.79331 -12.62455 -12.35221 -12.26011 -12.14606 -12.04724 -11.92490 -11.79836 -11.75682 -11.70175 -11.44376 -11.28594 -11.17082 -10.77558 -10.56426 -10.37541 -10.29359 -9.16907 -8.06966 -6.20994 1.38867 1.40842 1.52271 2.43496 2.81262 3.18292 3.25162 3.70738 3.76116 3.94269 4.03057 4.12060 4.23902 4.28851 4.36471 4.42404 4.54662 4.56279 4.58086 4.62249 4.66323 4.69934 4.78387 4.80010 4.82993 4.84936 4.95904 4.99492 5.02626 5.08933 5.13111 5.22326 5.25100 5.26721 5.32254 5.34918 5.40965 5.47711 5.48560 5.61687 5.69488 6.05028 6.16917 6.21553 6.42564 6.46634 6.59378 6.92001 7.46861 8.96688 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.044969 B = 0.002643 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.506538 B =10592.050939 C =10759.205495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.101 4.101 11 C -0.091 4.091 12 C 0.103 3.897 13 N -0.678 5.678 14 C 0.059 3.941 15 C 0.069 3.931 16 O -0.386 6.386 17 C 0.075 3.925 18 C -0.146 4.146 19 C -0.121 4.121 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.098 4.098 24 H 0.259 0.741 25 H -0.008 1.008 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.340 0.660 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.026 0.974 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -23.405 5.649 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.139 4.139 11 C -0.130 4.130 12 C -0.007 4.007 13 N -0.308 5.308 14 C -0.071 4.071 15 C -0.007 4.007 16 O -0.305 6.305 17 C 0.017 3.983 18 C -0.184 4.184 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.170 4.170 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.010 0.990 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.668 -23.673 5.601 24.770 hybrid contribution -0.605 2.046 0.080 2.135 sum -5.274 -21.627 5.682 22.974 Atomic orbital electron populations 1.70027 1.07104 1.26869 1.51736 1.25745 0.95697 1.02328 0.95007 0.85603 0.79125 0.79934 0.77584 1.19254 1.20660 1.20597 1.21683 0.93007 0.92473 1.49988 0.93222 1.18636 0.93094 0.92281 0.93337 1.21500 0.97923 0.94603 0.99906 1.21373 0.98047 0.96402 0.97138 1.21400 0.94510 0.86497 0.98311 1.60592 1.28849 1.30750 1.10630 1.22029 0.99867 0.94567 0.90591 1.22563 0.92472 0.87102 0.98597 1.88038 1.38536 1.16930 1.86985 1.23163 0.95235 0.83192 0.96667 1.23017 1.00875 0.97112 0.97424 1.22339 0.98264 0.94084 1.01132 1.22085 0.97788 0.97793 0.98160 1.22189 0.98875 0.94503 1.00521 1.22160 0.98199 0.96463 1.00168 1.21349 0.98684 0.95978 0.97674 0.93168 0.99029 0.93531 0.93691 0.91589 0.93200 0.91473 0.84239 0.93120 0.91089 0.92991 0.91385 0.90794 0.91290 0.92117 0.91025 0.90460 0.91762 0.90255 0.92175 0.90546 0.93430 0.92751 0.95560 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.90 11.32 21.45 0.24 -53.66 16 2 C 0.01 0.59 5.30 84.66 0.45 1.03 16 3 Si 0.95 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 7 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.30 2.10 -11.54 -0.02 2.28 16 10 C -0.10 -4.33 5.14 30.60 0.16 -4.17 16 11 C -0.09 -3.31 5.53 30.60 0.17 -3.14 16 12 C 0.10 3.45 2.47 44.91 0.11 3.56 16 13 N -0.68 -19.29 6.20 -491.57 -3.05 -22.33 16 14 C 0.06 1.40 5.87 86.31 0.51 1.91 16 15 C 0.07 1.40 6.07 71.98 0.44 1.83 16 16 O -0.39 -9.18 10.00 -148.98 -1.49 -10.67 16 17 C 0.08 1.36 3.33 31.67 0.11 1.47 16 18 C -0.15 -2.51 6.65 32.01 0.21 -2.29 16 19 C -0.12 -1.56 6.84 31.79 0.22 -1.34 16 20 C -0.12 -1.58 6.80 31.32 0.21 -1.36 16 21 C -0.12 -2.02 6.56 31.32 0.21 -1.81 16 22 C -0.13 -4.94 5.18 30.61 0.16 -4.78 16 23 C -0.10 -4.70 4.98 30.61 0.15 -4.55 16 24 H 0.26 14.45 8.31 -92.71 -0.77 13.67 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.07 2.31 7.80 -2.39 -0.02 2.30 16 31 H 0.34 9.23 8.47 -89.70 -0.76 8.47 16 32 H 0.05 1.15 7.44 -2.39 -0.02 1.13 16 33 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.07 1.12 7.84 -2.39 -0.02 1.10 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.06 1.20 8.07 -2.39 -0.02 1.18 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 1.84 8.13 -2.39 -0.02 1.83 16 46 H 0.05 1.86 7.45 -2.39 -0.02 1.84 16 47 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 48 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 Total: -1.00 -62.04 367.21 1.15 -60.89 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.13 Total: 20.62 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 3.29 Total: -41.36 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.80 Total: -75.99 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -1.49 Total: -10.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -62.04 1.15 -60.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328459.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.295 kcal (2) G-P(sol) polarization free energy of solvation -62.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds