Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.52998 * 109.47419 * 300.27906 * 9 7 2 11 11 C 1.52996 * 109.47238 * 299.99829 * 10 9 7 12 12 C 1.52996 * 109.47334 * 300.00042 * 11 10 9 13 13 N 1.46896 * 109.47355 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99758 * 85.00054 * 13 12 11 15 15 C 1.53001 * 109.46980 * 180.02562 * 14 13 12 16 16 H 1.08997 * 109.47335 * 55.00350 * 15 14 13 17 17 C 1.53005 * 109.47097 * 294.99683 * 15 14 13 18 18 C 1.52995 * 109.46846 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47409 * 60.00120 * 18 17 15 20 20 C 1.52991 * 109.47145 * 299.99819 * 19 18 17 21 21 H 1.09005 * 109.47543 * 300.00200 * 20 19 18 22 22 O 1.42894 * 109.47501 * 179.97438 * 20 19 18 23 23 C 1.53000 * 109.47293 * 59.99682 * 20 19 18 24 24 C 1.52998 * 109.46992 * 59.99807 * 12 11 10 25 25 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 26 26 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 28 28 H 1.09004 * 109.46783 * 60.00191 * 10 9 7 29 29 H 1.09005 * 109.46870 * 179.97438 * 10 9 7 30 30 H 1.09000 * 109.46855 * 179.97438 * 11 10 9 31 31 H 1.09005 * 109.46715 * 59.99932 * 11 10 9 32 32 H 1.09005 * 109.47125 * 300.00194 * 12 11 10 33 33 H 1.00897 * 111.00444 * 208.94792 * 13 12 11 34 34 H 1.09005 * 109.47045 * 299.99881 * 14 13 12 35 35 H 1.08998 * 109.47435 * 60.00149 * 14 13 12 36 36 H 1.08998 * 109.47010 * 300.00009 * 17 15 14 37 37 H 1.08998 * 109.46624 * 59.99842 * 17 15 14 38 38 H 1.09000 * 109.47092 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.47177 * 299.99728 * 18 17 15 40 40 H 1.08997 * 109.46571 * 59.99926 * 19 18 17 41 41 H 1.08997 * 109.46817 * 179.97438 * 19 18 17 42 42 H 0.96699 * 113.99904 * 59.99676 * 22 20 19 43 43 H 1.09000 * 109.47566 * 179.97438 * 23 20 19 44 44 H 1.09000 * 109.47247 * 60.00011 * 23 20 19 45 45 H 1.09004 * 109.47239 * 180.02562 * 24 12 11 46 46 H 1.08996 * 109.47462 * 60.00191 * 24 12 11 47 47 H 1.08996 * 109.47100 * 180.02562 * 25 9 7 48 48 H 1.09000 * 109.47211 * 300.00973 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 0.3716 -2.5746 1.2550 11 6 1.2513 -2.4880 2.5038 12 6 2.2456 -3.6508 2.5089 13 7 3.0906 -3.5673 3.7076 14 6 2.4363 -4.2044 4.8583 15 6 3.3443 -4.0971 6.0851 16 1 3.6025 -3.0519 6.2557 17 6 4.6211 -4.9056 5.8468 18 6 5.5288 -4.7988 7.0738 19 6 4.7971 -5.3503 8.2992 20 6 3.5203 -4.5418 8.5374 21 1 3.7785 -3.4967 8.7084 22 8 2.8365 -5.0573 9.6814 23 6 2.6125 -4.6486 7.3104 24 6 3.1251 -3.5753 1.2593 25 6 2.2454 -3.6620 0.0104 26 1 -0.4850 0.8400 0.0004 27 1 0.6244 -2.5609 -0.8844 28 1 -0.3368 -1.7462 1.2513 29 1 -0.1737 -3.5185 1.2590 30 1 0.6246 -2.5414 3.3940 31 1 1.7963 -1.5440 2.4995 32 1 1.7006 -4.5949 2.5131 33 1 3.9991 -3.9723 3.5386 34 1 1.4902 -3.7027 5.0620 35 1 2.2498 -5.2548 4.6347 36 1 4.3628 -5.9508 5.6763 37 1 5.1421 -4.5130 4.9737 38 1 6.4387 -5.3745 6.9040 39 1 5.7871 -3.7538 7.2448 40 1 4.5388 -6.3954 8.1281 41 1 5.4439 -5.2746 9.1732 42 1 3.3535 -5.0214 10.4978 43 1 1.7027 -4.0730 7.4803 44 1 2.3542 -5.6936 7.1394 45 1 3.8332 -4.4040 1.2627 46 1 3.6701 -2.6313 1.2550 47 1 1.7005 -4.6059 0.0142 48 1 2.8721 -3.6081 -0.8798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = -94.882008 kcal Electronic energy + Delta-G solvation = -23098.486557 eV Core-core repulsion = 19957.963960 eV Total energy + Delta-G solvation = -3140.522597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.47925 -38.06525 -36.27940 -34.43187 -32.29913 -31.09547 -29.73409 -29.49662 -27.81215 -25.10564 -24.12916 -22.59268 -21.66868 -21.03670 -20.28524 -19.93428 -18.57578 -17.30993 -15.88700 -15.61800 -15.32631 -14.89149 -14.69886 -14.63611 -14.20236 -13.91390 -13.69293 -13.04342 -12.97613 -12.86403 -12.68269 -12.41347 -11.98747 -11.59817 -11.45721 -11.27476 -11.16281 -11.08193 -10.92841 -10.85345 -10.78002 -10.59778 -10.51339 -10.28039 -10.16041 -10.02456 -9.90586 -9.57757 -9.09715 -8.83232 -8.55160 -8.19434 -7.93528 -5.88871 -3.92660 3.36026 3.43137 3.46715 3.87236 4.46508 4.47716 4.51898 4.60969 4.82014 4.94844 5.02027 5.21244 5.26596 5.29451 5.34789 5.41881 5.52884 5.63874 5.68199 5.73919 5.80761 5.85980 5.90963 5.99898 6.00258 6.06248 6.08477 6.23756 6.29947 6.39398 6.51515 6.60546 6.64909 6.80371 6.83729 6.89358 7.10885 7.27156 7.40168 7.46431 7.63528 7.76922 7.80767 7.84135 8.02582 8.24741 8.56856 9.09175 9.70245 11.17161 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.003535 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.501430 B = 7917.857724 C = 8140.541264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.498 4.498 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.109 4.109 11 C -0.084 4.084 12 C 0.095 3.905 13 N -0.685 5.685 14 C 0.067 3.933 15 C -0.082 4.082 16 H 0.082 0.918 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.150 4.150 20 C 0.105 3.895 21 H 0.055 0.945 22 O -0.570 6.570 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.104 4.104 26 H 0.258 0.742 27 H 0.023 0.977 28 H 0.091 0.909 29 H 0.010 0.990 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.331 0.669 34 H 0.073 0.927 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.375 0.625 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.031 0.969 46 H 0.078 0.922 47 H 0.031 0.969 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.640 -10.544 15.351 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.073 0.927 9 C 0.025 3.975 10 C -0.148 4.148 11 C -0.122 4.122 12 C -0.013 4.013 13 N -0.316 5.316 14 C -0.063 4.063 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.188 4.188 20 C 0.046 3.954 21 H 0.073 0.927 22 O -0.375 6.375 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.110 0.890 29 H 0.028 0.972 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.221 0.779 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.097 0.903 47 H 0.050 0.950 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.803 -9.883 15.067 19.636 hybrid contribution 1.021 0.054 0.233 1.048 sum 8.824 -9.829 15.300 20.213 Atomic orbital electron populations 1.69867 1.05833 1.26089 1.51409 1.24921 0.94739 0.98774 0.95507 0.86717 0.80056 0.84095 0.77877 1.20979 1.21416 1.19929 1.21136 0.92692 0.90408 1.49361 0.92710 1.18687 0.92643 0.92061 0.94062 1.21538 0.98795 0.99170 0.95254 1.21325 0.96015 0.98298 0.96594 1.21572 0.94071 0.97599 0.88089 1.60588 1.05741 1.60254 1.05038 1.21952 0.97651 0.96296 0.90393 1.21123 0.94808 1.00559 0.93611 0.89978 1.21647 0.95929 1.00139 0.97910 1.21459 0.98119 1.01369 0.94391 1.22265 0.97018 1.00891 0.98628 1.21826 0.91459 0.95949 0.86137 0.92689 1.86528 1.45597 1.86469 1.18926 1.21482 0.98365 1.02240 0.92326 1.21581 0.97275 1.01064 0.94509 1.21529 0.98243 0.98637 0.95856 0.93245 0.95934 0.89043 0.97164 0.95407 0.90497 0.95584 0.85052 0.90906 0.95872 0.92202 0.91200 0.91835 0.91707 0.91304 0.92089 0.77857 0.91100 0.91434 0.95003 0.90303 0.95050 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 11.31 55.43 0.63 -24.87 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.88 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -13.33 6.61 -34.44 -0.23 -13.55 16 8 H 0.05 1.46 6.71 -52.49 -0.35 1.11 16 9 C 0.04 1.08 2.59 -91.77 -0.24 0.85 16 10 C -0.11 -2.59 5.23 -26.73 -0.14 -2.73 16 11 C -0.08 -1.81 5.20 -26.74 -0.14 -1.95 16 12 C 0.10 1.75 2.49 -67.72 -0.17 1.58 16 13 N -0.68 -10.71 6.31 -106.72 -0.67 -11.38 16 14 C 0.07 0.90 4.94 -3.82 -0.02 0.88 16 15 C -0.08 -0.91 2.40 -90.62 -0.22 -1.13 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.12 -1.15 4.98 -26.73 -0.13 -1.29 16 18 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 19 C -0.15 -1.21 5.54 -26.73 -0.15 -1.35 16 20 C 0.10 0.98 3.47 -26.74 -0.09 0.89 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 O -0.57 -5.53 13.32 -35.23 -0.47 -6.00 16 23 C -0.11 -1.14 4.85 -26.73 -0.13 -1.27 16 24 C -0.11 -2.01 4.97 -26.73 -0.13 -2.15 16 25 C -0.10 -2.17 5.41 -26.73 -0.14 -2.32 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 29 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.03 0.56 7.46 -51.93 -0.39 0.18 16 31 H 0.08 1.87 7.22 -51.93 -0.37 1.50 16 32 H 0.03 0.48 7.80 -51.93 -0.41 0.08 16 33 H 0.33 4.66 6.60 -39.29 -0.26 4.40 16 34 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 35 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.70 6.68 -51.93 -0.35 0.36 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.37 1.99 9.08 45.56 0.41 2.40 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 46 H 0.08 1.64 6.62 -51.93 -0.34 1.30 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -28.77 353.69 -10.62 -39.38 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.23 Total: 4.21 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.18 Total: -23.08 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.05 Total: -36.25 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.47 Total: -6.00 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.77 -10.62 -39.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.498 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds