Wall clock time and date at job start Tue Mar 31 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48509 * 109.47010 * 264.77352 * 3 2 1 5 5 H 1.48500 * 109.47263 * 24.77185 * 3 2 1 6 6 H 1.48502 * 109.47439 * 144.77609 * 3 2 1 7 7 C 1.37877 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99878 * 5.98647 * 7 2 1 9 9 C 1.50702 * 120.00149 * 185.98112 * 7 2 1 10 10 C 1.53002 * 109.47021 * 215.15863 * 9 7 2 11 11 C 1.52997 * 109.47021 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47248 * 59.99848 * 11 10 9 13 13 N 1.46895 * 109.47257 * 60.00361 * 12 11 10 14 14 C 1.46900 * 111.00263 * 155.00016 * 13 12 11 15 15 C 1.53001 * 109.47088 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47230 * 305.00088 * 15 14 13 17 17 C 1.53001 * 109.47289 * 65.00133 * 15 14 13 18 18 C 1.53001 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46821 * 299.99831 * 18 17 15 20 20 C 1.53004 * 109.47351 * 60.00241 * 19 18 17 21 21 H 1.08999 * 109.47049 * 59.99663 * 20 19 18 22 22 O 1.42894 * 109.46939 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.46961 * 299.99673 * 20 19 18 24 24 C 1.53002 * 109.47233 * 300.00021 * 12 11 10 25 25 C 1.52997 * 109.47051 * 60.00235 * 24 12 11 26 26 H 0.97002 * 119.99891 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47222 * 335.15911 * 9 7 2 28 28 H 1.09002 * 109.47117 * 59.99808 * 10 9 7 29 29 H 1.09001 * 109.47161 * 300.00085 * 10 9 7 30 30 H 1.09001 * 109.46960 * 299.99886 * 11 10 9 31 31 H 1.08997 * 109.47377 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47405 * 179.97438 * 12 11 10 33 33 H 1.00899 * 111.00320 * 31.04030 * 13 12 11 34 34 H 1.08994 * 109.46951 * 299.99622 * 14 13 12 35 35 H 1.09004 * 109.47204 * 59.99840 * 14 13 12 36 36 H 1.09002 * 109.46616 * 300.00212 * 17 15 14 37 37 H 1.08999 * 109.47022 * 59.99827 * 17 15 14 38 38 H 1.08997 * 109.46945 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46884 * 59.99535 * 18 17 15 40 40 H 1.08999 * 109.47319 * 300.00069 * 19 18 17 41 41 H 1.09004 * 109.46686 * 180.02562 * 19 18 17 42 42 H 0.96703 * 114.00375 * 299.99209 * 22 20 19 43 43 H 1.08999 * 109.46884 * 300.00298 * 23 20 19 44 44 H 1.08994 * 109.47406 * 179.97438 * 23 20 19 45 45 H 1.09002 * 109.47117 * 180.02562 * 24 12 11 46 46 H 1.09001 * 109.47161 * 300.00076 * 24 12 11 47 47 H 1.08997 * 109.47438 * 180.02562 * 25 24 12 48 48 H 1.08994 * 109.47430 * 59.99590 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6072 1.9826 -1.3943 5 1 1.3958 2.6821 0.5866 6 1 3.4872 1.4746 0.8075 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1269 -0.0966 9 6 3.5054 -1.1975 0.1365 10 6 4.0911 -2.3336 -0.7045 11 6 5.6147 -2.3375 -0.5660 12 6 5.9928 -2.5428 0.9023 13 7 5.4552 -3.8268 1.3715 14 6 6.2385 -4.3441 2.5015 15 6 5.6493 -5.6790 2.9617 16 1 4.5911 -5.5499 3.1892 17 6 5.8088 -6.7175 1.8495 18 6 5.2202 -8.0525 2.3101 19 6 5.9573 -8.5297 3.5630 20 6 5.7978 -7.4913 4.6752 21 1 4.7396 -7.3626 4.9031 22 8 6.4857 -7.9373 5.8455 23 6 6.3864 -6.1562 4.2147 24 6 5.4072 -1.4067 1.7433 25 6 3.8835 -1.4028 1.6048 26 1 -0.4850 0.8401 -0.0004 27 1 3.9041 -0.2447 -0.2119 28 1 3.8213 -2.1876 -1.7505 29 1 3.6924 -3.2864 -0.3561 30 1 6.0137 -1.3848 -0.9141 31 1 6.0320 -3.1465 -1.1655 32 1 7.0783 -2.5460 1.0009 33 1 5.4170 -4.4991 0.6201 34 1 7.2725 -4.4912 2.1897 35 1 6.2051 -3.6297 3.3241 36 1 5.2841 -6.3772 0.9568 37 1 6.8670 -6.8465 1.6220 38 1 5.3335 -8.7922 1.5175 39 1 4.1621 -7.9238 2.5379 40 1 7.0154 -8.6585 3.3351 41 1 5.5382 -9.4811 3.8908 42 1 6.1639 -8.7801 6.1938 43 1 7.4445 -6.2850 3.9868 44 1 6.2724 -5.4163 5.0068 45 1 5.6769 -1.5527 2.7893 46 1 5.8061 -0.4539 1.3952 47 1 3.4663 -0.5932 2.2036 48 1 3.4846 -2.3555 1.9529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:07 Heat of formation + Delta-G solvation = -94.154810 kcal Electronic energy + Delta-G solvation = -23189.405899 eV Core-core repulsion = 20048.914836 eV Total energy + Delta-G solvation = -3140.491063 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.53867 -38.34177 -36.22576 -34.24559 -32.42998 -31.13146 -29.95596 -29.81773 -28.51603 -25.08661 -24.10004 -22.58004 -21.79878 -21.15309 -20.35046 -19.93120 -18.28540 -17.31845 -16.70412 -15.92792 -15.47295 -15.01952 -14.74723 -14.63757 -14.16787 -13.98966 -13.82774 -12.94680 -12.90603 -12.79574 -12.73713 -12.57345 -12.25413 -11.98581 -11.57773 -11.47621 -11.34328 -11.24463 -11.22171 -10.96039 -10.73952 -10.62342 -10.56127 -10.46711 -10.22014 -10.06164 -9.92138 -9.61155 -9.31014 -8.94036 -8.72013 -8.38231 -8.00331 -5.96025 -3.92079 3.35976 3.43993 3.47461 3.85147 4.42705 4.46971 4.52907 4.53756 4.81850 4.92990 5.01839 5.15358 5.24274 5.28417 5.31583 5.35355 5.37673 5.45825 5.52464 5.59542 5.66198 5.77508 5.79580 5.87144 5.98381 6.00961 6.02952 6.05179 6.15730 6.21239 6.24533 6.33025 6.36424 6.43639 6.58010 6.69808 6.77578 7.01708 7.23113 7.31642 7.38704 7.41038 7.59020 7.71087 7.78743 7.95507 8.68618 9.11381 9.69299 11.18042 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003600 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.782727 B = 7775.254962 C = 7923.227318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.123 4.123 12 C 0.095 3.905 13 N -0.672 5.672 14 C 0.067 3.933 15 C -0.083 4.083 16 H 0.085 0.915 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.150 4.150 20 C 0.104 3.896 21 H 0.056 0.944 22 O -0.571 6.571 23 C -0.105 4.105 24 C -0.109 4.109 25 C -0.097 4.097 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.028 0.972 33 H 0.337 0.663 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.375 0.625 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.039 0.961 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.820 -15.115 6.215 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.540 4.540 8 H 0.089 0.911 9 C -0.001 4.001 10 C -0.134 4.134 11 C -0.161 4.161 12 C -0.014 4.014 13 N -0.305 5.305 14 C -0.063 4.063 15 C -0.102 4.102 16 H 0.103 0.897 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.188 4.188 20 C 0.046 3.954 21 H 0.074 0.926 22 O -0.376 6.376 23 C -0.143 4.143 24 C -0.148 4.148 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.156 0.844 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.222 0.778 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.058 0.942 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.510 -14.131 6.504 21.273 hybrid contribution 0.888 0.141 -0.379 0.976 sum 15.398 -13.990 6.125 21.688 Atomic orbital electron populations 1.69928 1.06305 1.26648 1.51707 1.25069 0.94627 0.98879 0.94800 0.86873 0.80265 0.83900 0.78527 1.20514 1.21931 1.18930 1.21074 0.89732 0.94294 1.48944 0.91142 1.19106 0.96059 0.93565 0.91384 1.21467 0.91270 1.00951 0.99680 1.21815 0.99565 1.00555 0.94148 1.21448 0.94726 0.90119 0.95128 1.60447 1.54236 1.04879 1.10907 1.21962 0.93912 0.95228 0.95149 1.21119 1.01221 0.93983 0.93841 0.89671 1.21640 1.00814 0.94546 0.98572 1.21461 1.00049 0.97160 0.96744 1.22264 1.01548 0.98490 0.96464 1.21830 0.95359 0.94071 0.84162 0.92570 1.86513 1.63591 1.42946 1.44568 1.21470 1.00180 0.95173 0.97465 1.21622 0.99385 0.95985 0.97761 1.21628 0.91200 1.01198 0.99520 0.92948 0.95985 0.93447 0.92095 0.92204 0.93585 0.95416 0.84363 0.95982 0.91034 0.91112 0.92337 0.91803 0.91526 0.91396 0.92058 0.77795 0.91553 0.91182 0.93740 0.93223 0.94214 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.09 27.02 -169.99 -4.59 17.50 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.40 6.78 56.52 0.38 -6.02 16 7 C -0.50 -14.21 8.85 -34.44 -0.30 -14.51 16 8 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 9 C 0.02 0.42 1.79 -91.77 -0.16 0.25 16 10 C -0.10 -1.90 5.03 -26.73 -0.13 -2.03 16 11 C -0.12 -1.97 5.30 -26.73 -0.14 -2.11 16 12 C 0.10 1.45 2.82 -67.72 -0.19 1.26 16 13 N -0.67 -9.42 4.82 -106.73 -0.51 -9.93 16 14 C 0.07 0.80 4.94 -3.82 -0.02 0.78 16 15 C -0.08 -0.87 2.40 -90.62 -0.22 -1.09 16 16 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.12 -1.11 4.98 -26.73 -0.13 -1.24 16 18 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 19 C -0.15 -1.20 5.54 -26.73 -0.15 -1.34 16 20 C 0.10 0.96 3.47 -26.73 -0.09 0.87 16 21 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 22 O -0.57 -5.43 13.32 -35.23 -0.47 -5.90 16 23 C -0.10 -1.06 4.85 -26.73 -0.13 -1.19 16 24 C -0.11 -1.92 5.53 -26.73 -0.15 -2.06 16 25 C -0.10 -2.09 5.03 -26.73 -0.13 -2.22 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.53 5.24 -51.93 -0.27 0.26 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.21 7.48 -51.93 -0.39 0.82 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.03 0.39 7.80 -51.93 -0.40 -0.01 16 33 H 0.34 4.41 6.44 -39.29 -0.25 4.15 16 34 H 0.02 0.25 8.05 -51.93 -0.42 -0.17 16 35 H 0.07 0.92 7.44 -51.93 -0.39 0.53 16 36 H 0.07 0.70 6.68 -51.93 -0.35 0.36 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.38 1.97 9.08 45.56 0.41 2.38 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.72 7.45 -51.93 -0.39 0.34 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.49 7.60 -51.93 -0.39 1.10 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -31.08 355.64 -9.99 -41.07 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.33 Total: 3.31 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -2.21 Total: -23.95 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.26 Total: -37.39 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.47 Total: -5.90 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.59 Total: 17.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.08 -9.99 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.083 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds