Wall clock time and date at job start Tue Mar 31 2020 05:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00117 * 2 1 4 4 H 1.48509 * 109.47010 * 264.77352 * 3 2 1 5 5 H 1.48500 * 109.47263 * 24.77185 * 3 2 1 6 6 H 1.48502 * 109.47439 * 144.77609 * 3 2 1 7 7 C 1.37877 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99878 * 5.98647 * 7 2 1 9 9 C 1.50702 * 120.00149 * 185.98112 * 7 2 1 10 10 C 1.53002 * 109.47021 * 215.15863 * 9 7 2 11 11 C 1.52997 * 109.47021 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47248 * 59.99848 * 11 10 9 13 13 N 1.46895 * 109.47257 * 60.00361 * 12 11 10 14 14 C 1.46900 * 111.00263 * 155.00016 * 13 12 11 15 15 C 1.53001 * 109.47088 * 179.97438 * 14 13 12 16 16 H 1.08999 * 109.47230 * 305.00088 * 15 14 13 17 17 C 1.53001 * 109.47289 * 65.00133 * 15 14 13 18 18 C 1.53001 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46821 * 299.99831 * 18 17 15 20 20 C 1.53004 * 109.47351 * 60.00241 * 19 18 17 21 21 H 1.08999 * 109.47049 * 59.99663 * 20 19 18 22 22 O 1.42894 * 109.46939 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.46961 * 299.99673 * 20 19 18 24 24 C 1.53002 * 109.47233 * 300.00021 * 12 11 10 25 25 C 1.52997 * 109.47051 * 60.00235 * 24 12 11 26 26 H 0.97002 * 119.99891 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47222 * 335.15911 * 9 7 2 28 28 H 1.09002 * 109.47117 * 59.99808 * 10 9 7 29 29 H 1.09001 * 109.47161 * 300.00085 * 10 9 7 30 30 H 1.09001 * 109.46960 * 299.99886 * 11 10 9 31 31 H 1.08997 * 109.47377 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47405 * 179.97438 * 12 11 10 33 33 H 1.00899 * 111.00320 * 31.04030 * 13 12 11 34 34 H 1.08994 * 109.46951 * 299.99622 * 14 13 12 35 35 H 1.09004 * 109.47204 * 59.99840 * 14 13 12 36 36 H 1.09002 * 109.46616 * 300.00212 * 17 15 14 37 37 H 1.08999 * 109.47022 * 59.99827 * 17 15 14 38 38 H 1.08997 * 109.46945 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.46884 * 59.99535 * 18 17 15 40 40 H 1.08999 * 109.47319 * 300.00069 * 19 18 17 41 41 H 1.09004 * 109.46686 * 180.02562 * 19 18 17 42 42 H 0.96703 * 114.00375 * 299.99209 * 22 20 19 43 43 H 1.08999 * 109.46884 * 300.00298 * 23 20 19 44 44 H 1.08994 * 109.47406 * 179.97438 * 23 20 19 45 45 H 1.09002 * 109.47117 * 180.02562 * 24 12 11 46 46 H 1.09001 * 109.47161 * 300.00076 * 24 12 11 47 47 H 1.08997 * 109.47438 * 180.02562 * 25 24 12 48 48 H 1.08994 * 109.47430 * 59.99590 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6072 1.9826 -1.3943 5 1 1.3958 2.6821 0.5866 6 1 3.4872 1.4746 0.8075 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1269 -0.0966 9 6 3.5054 -1.1975 0.1365 10 6 4.0911 -2.3336 -0.7045 11 6 5.6147 -2.3375 -0.5660 12 6 5.9928 -2.5428 0.9023 13 7 5.4552 -3.8268 1.3715 14 6 6.2385 -4.3441 2.5015 15 6 5.6493 -5.6790 2.9617 16 1 4.5911 -5.5499 3.1892 17 6 5.8088 -6.7175 1.8495 18 6 5.2202 -8.0525 2.3101 19 6 5.9573 -8.5297 3.5630 20 6 5.7978 -7.4913 4.6752 21 1 4.7396 -7.3626 4.9031 22 8 6.4857 -7.9373 5.8455 23 6 6.3864 -6.1562 4.2147 24 6 5.4072 -1.4067 1.7433 25 6 3.8835 -1.4028 1.6048 26 1 -0.4850 0.8401 -0.0004 27 1 3.9041 -0.2447 -0.2119 28 1 3.8213 -2.1876 -1.7505 29 1 3.6924 -3.2864 -0.3561 30 1 6.0137 -1.3848 -0.9141 31 1 6.0320 -3.1465 -1.1655 32 1 7.0783 -2.5460 1.0009 33 1 5.4170 -4.4991 0.6201 34 1 7.2725 -4.4912 2.1897 35 1 6.2051 -3.6297 3.3241 36 1 5.2841 -6.3772 0.9568 37 1 6.8670 -6.8465 1.6220 38 1 5.3335 -8.7922 1.5175 39 1 4.1621 -7.9238 2.5379 40 1 7.0154 -8.6585 3.3351 41 1 5.5382 -9.4811 3.8908 42 1 6.1639 -8.7801 6.1938 43 1 7.4445 -6.2850 3.9868 44 1 6.2724 -5.4163 5.0068 45 1 5.6769 -1.5527 2.7893 46 1 5.8061 -0.4539 1.3952 47 1 3.4663 -0.5932 2.2036 48 1 3.4846 -2.3555 1.9529 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328689.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:07 Heat of formation + Delta-G solvation = -114.629817 kcal Electronic energy + Delta-G solvation = -23190.293762 eV Core-core repulsion = 20048.914836 eV Total energy + Delta-G solvation = -3141.378926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43301 -39.58514 -37.12527 -35.57620 -34.19512 -32.36732 -31.45291 -30.81768 -29.70080 -26.56083 -25.48611 -23.39043 -23.19316 -22.08824 -21.92191 -20.71902 -19.82879 -18.84957 -18.04195 -16.89624 -16.63794 -16.34092 -15.97431 -15.60592 -15.39016 -15.01921 -14.78543 -14.63814 -14.47699 -14.15630 -13.75388 -13.69136 -13.37090 -13.17716 -12.97940 -12.81086 -12.77369 -12.47558 -12.38038 -12.17419 -11.96831 -11.93232 -11.72825 -11.67841 -11.49440 -11.40404 -11.11199 -11.01890 -10.72239 -10.63514 -10.53148 -10.49360 -9.09435 -8.23428 -6.23598 1.35066 1.36948 1.48409 2.39294 3.09228 3.13203 3.51006 3.73256 3.78549 4.00766 4.09932 4.10622 4.18140 4.25413 4.29097 4.42496 4.50851 4.54637 4.62918 4.64469 4.67993 4.69840 4.81408 4.87063 4.90454 4.91310 4.94996 5.02186 5.08663 5.13254 5.15456 5.22821 5.25004 5.27897 5.29561 5.32624 5.42691 5.56835 5.59472 5.62603 5.81023 5.83019 5.99418 6.31919 6.45328 6.67494 6.84464 6.89702 7.41048 8.94405 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.003600 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.782727 B = 7775.254962 C = 7923.227318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.004 3.996 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.246 1.246 7 C -0.506 4.506 8 H 0.026 0.974 9 C 0.016 3.984 10 C -0.091 4.091 11 C -0.115 4.115 12 C 0.100 3.900 13 N -0.687 5.687 14 C 0.071 3.929 15 C -0.075 4.075 16 H 0.065 0.935 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.142 4.142 20 C 0.104 3.896 21 H 0.052 0.948 22 O -0.587 6.587 23 C -0.102 4.102 24 C -0.105 4.105 25 C -0.090 4.090 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.344 0.656 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.393 0.607 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.016 0.984 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.977 -15.572 6.173 24.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.191 4.191 3 Si 0.767 3.233 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.170 1.170 7 C -0.544 4.544 8 H 0.044 0.956 9 C -0.003 4.003 10 C -0.129 4.129 11 C -0.153 4.153 12 C -0.010 4.010 13 N -0.321 5.321 14 C -0.058 4.058 15 C -0.094 4.094 16 H 0.083 0.917 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.180 4.180 20 C 0.045 3.955 21 H 0.070 0.930 22 O -0.395 6.395 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.128 4.128 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.164 0.836 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.035 0.965 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.686 -14.621 6.466 23.841 hybrid contribution -0.189 0.172 -0.329 0.417 sum 17.497 -14.449 6.137 23.507 Atomic orbital electron populations 1.70089 1.08280 1.27689 1.53818 1.25969 0.95415 1.03015 0.94735 0.85805 0.79379 0.78803 0.79332 1.19207 1.21884 1.16973 1.21430 0.92612 0.92548 1.47827 0.95580 1.19118 0.92709 0.95049 0.93441 1.21318 0.94518 0.98909 0.98135 1.21742 0.95961 1.02185 0.95368 1.21367 0.95976 0.89698 0.93921 1.60369 1.55136 1.04921 1.11689 1.21946 0.94431 0.95370 0.94083 1.21003 0.99898 0.93967 0.94552 0.91689 1.21606 1.01291 0.94594 0.97743 1.21459 0.99606 0.96938 0.97359 1.22193 1.01512 0.98696 0.95605 1.21794 0.94958 0.94035 0.84687 0.92967 1.86465 1.63951 1.44396 1.44702 1.21420 1.00191 0.95572 0.96858 1.21565 0.95830 0.97541 0.99345 1.21425 0.94554 0.99457 0.97413 0.92914 0.96049 0.94428 0.92873 0.91537 0.90638 0.92753 0.83600 0.94549 0.92065 0.91698 0.91510 0.90709 0.92249 0.91425 0.90497 0.75738 0.91393 0.92292 0.92461 0.92649 0.96517 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.80 13.96 21.45 0.30 -61.51 16 2 C 0.00 0.24 5.47 84.65 0.46 0.71 16 3 Si 0.94 45.81 27.02 68.60 1.85 47.66 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.25 -11.12 6.78 99.48 0.67 -10.45 16 7 C -0.51 -29.62 8.85 25.60 0.23 -29.39 16 8 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 9 C 0.02 0.73 1.79 -11.54 -0.02 0.71 16 10 C -0.09 -3.52 5.03 30.59 0.15 -3.37 16 11 C -0.11 -3.30 5.30 30.59 0.16 -3.13 16 12 C 0.10 2.72 2.82 44.92 0.13 2.84 16 13 N -0.69 -17.88 4.82 -491.59 -2.37 -20.25 16 14 C 0.07 1.55 4.94 86.30 0.43 1.98 16 15 C -0.08 -1.50 2.40 -10.79 -0.03 -1.53 16 16 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.11 -1.96 4.98 30.59 0.15 -1.80 16 18 C -0.12 -1.76 5.92 30.59 0.18 -1.57 16 19 C -0.14 -1.98 5.54 30.60 0.17 -1.81 16 20 C 0.10 1.78 3.47 30.60 0.11 1.89 16 21 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 22 O -0.59 -10.25 13.32 -148.98 -1.98 -12.24 16 23 C -0.10 -1.96 4.85 30.60 0.15 -1.81 16 24 C -0.10 -3.41 5.53 30.59 0.17 -3.24 16 25 C -0.09 -3.85 5.03 30.59 0.15 -3.69 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.02 1.00 5.24 -2.39 -0.01 0.99 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 2.11 7.48 -2.39 -0.02 2.10 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.77 8.12 -2.39 -0.02 1.75 16 32 H 0.05 1.27 7.80 -2.39 -0.02 1.25 16 33 H 0.34 8.22 6.44 -89.69 -0.58 7.64 16 34 H 0.04 0.71 8.05 -2.39 -0.02 0.69 16 35 H 0.06 1.47 7.44 -2.38 -0.02 1.45 16 36 H 0.06 1.19 6.68 -2.39 -0.02 1.17 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.39 3.42 9.08 -74.06 -0.67 2.75 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.73 7.45 -2.39 -0.02 1.71 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.05 2.38 7.60 -2.39 -0.02 2.36 16 Total: -1.00 -69.04 355.64 0.03 -69.01 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -0.37 Total: 20.55 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 2.59 Total: -43.23 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.07 Total: -81.76 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -1.98 Total: -12.24 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.85 Total: 47.66 kcal Total: -69.04 0.03 -69.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328689.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.615 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds