Wall clock time and date at job start Tue Mar 31 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48496 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46730 * 300.00323 * 3 2 1 6 6 H 1.48498 * 109.46735 * 59.99881 * 3 2 1 7 7 C 1.37882 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47391 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46933 * 299.99697 * 11 10 9 13 13 N 1.46903 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.46896 * 110.99913 * 155.00073 * 13 12 11 15 15 C 1.53006 * 109.47191 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46866 * 305.00159 * 15 14 13 17 17 C 1.52997 * 109.46974 * 64.99934 * 15 14 13 18 18 C 1.52996 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46972 * 300.00293 * 18 17 15 20 20 C 1.52997 * 109.47415 * 59.99860 * 19 18 17 21 21 H 1.09001 * 109.46922 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47356 * 60.00092 * 20 19 18 23 23 C 1.52999 * 109.47000 * 185.00344 * 15 14 13 24 24 C 1.52997 * 109.47033 * 60.00337 * 12 11 10 25 25 C 1.52997 * 109.47314 * 300.00404 * 9 7 2 26 26 H 0.96999 * 119.99826 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.46883 * 60.00180 * 9 7 2 28 28 H 1.08997 * 109.46767 * 60.00036 * 10 9 7 29 29 H 1.09006 * 109.47159 * 300.00061 * 10 9 7 30 30 H 1.09006 * 109.46978 * 180.02562 * 11 10 9 31 31 H 1.08997 * 109.47497 * 60.00073 * 11 10 9 32 32 H 1.08997 * 109.47336 * 300.00475 * 12 11 10 33 33 H 1.00898 * 110.99569 * 31.05104 * 13 12 11 34 34 H 1.09006 * 109.47351 * 60.00050 * 14 13 12 35 35 H 1.08998 * 109.47320 * 300.00266 * 14 13 12 36 36 H 1.09000 * 109.47140 * 60.00393 * 17 15 14 37 37 H 1.09001 * 109.47375 * 300.00376 * 17 15 14 38 38 H 1.08992 * 109.47534 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47134 * 59.99508 * 18 17 15 40 40 H 1.09000 * 109.46986 * 299.99742 * 19 18 17 41 41 H 1.09001 * 109.47601 * 180.02562 * 19 18 17 42 42 H 0.96700 * 114.00205 * 59.99602 * 22 20 19 43 43 H 1.08993 * 109.47839 * 60.00073 * 23 15 14 44 44 H 1.09000 * 109.47160 * 299.99635 * 23 15 14 45 45 H 1.09003 * 109.47349 * 60.00008 * 24 12 11 46 46 H 1.08997 * 109.47403 * 179.97438 * 24 12 11 47 47 H 1.09003 * 109.46596 * 299.99674 * 25 9 7 48 48 H 1.08998 * 109.47463 * 59.99619 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6013 -5.0690 1.2472 13 7 -0.1327 -6.3415 1.2469 14 6 -0.4987 -6.7384 2.6131 15 6 -1.2594 -8.0653 2.5723 16 1 -2.1144 -7.9734 1.9026 17 6 -0.3306 -9.1702 2.0649 18 6 -1.0913 -10.4969 2.0234 19 6 -1.5810 -10.8481 3.4298 20 6 -2.5098 -9.7433 3.9372 21 1 -2.8583 -9.9933 4.9392 22 8 -3.6306 -9.6224 3.0590 23 6 -1.7486 -8.4162 3.9788 24 6 -0.3929 -3.9061 1.2485 25 6 0.3719 -2.5805 1.2489 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6040 -0.8923 30 1 2.1887 -5.8156 -0.0029 31 1 0.8533 -5.0442 -0.8922 32 1 1.2284 -5.0119 2.1369 33 1 0.4004 -7.0663 0.7904 34 1 -1.1313 -5.9700 3.0576 35 1 0.4047 -6.8561 3.2116 36 1 0.5245 -9.2620 2.7346 37 1 0.0180 -8.9201 1.0628 38 1 -0.4296 -11.2841 1.6624 39 1 -1.9462 -10.4047 1.3536 40 1 -0.7262 -10.9403 4.0997 41 1 -2.1227 -11.7936 3.4004 42 1 -4.1600 -10.4281 2.9837 43 1 -2.4103 -7.6291 4.3403 44 1 -0.8935 -8.5080 4.6485 45 1 -1.0200 -3.9633 0.3587 46 1 -1.0194 -3.9647 2.1384 47 1 0.9989 -2.5229 2.1387 48 1 -0.3364 -1.7520 1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:09 Heat of formation + Delta-G solvation = -96.517315 kcal Electronic energy + Delta-G solvation = -22846.108491 eV Core-core repulsion = 19705.514982 eV Total energy + Delta-G solvation = -3140.593509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.59259 -38.04240 -35.96311 -34.27457 -32.47597 -31.10370 -29.99266 -29.63575 -28.08693 -25.18442 -23.76142 -22.66356 -21.71730 -20.98019 -20.23103 -19.84709 -18.59747 -17.01465 -16.26137 -16.03443 -15.48322 -14.97891 -14.65850 -14.56543 -14.00774 -13.86862 -13.62493 -13.01169 -12.97642 -12.75921 -12.57006 -12.38067 -12.19164 -11.91055 -11.62477 -11.42540 -11.21026 -11.11133 -10.98282 -10.82681 -10.70529 -10.57488 -10.40659 -10.28182 -10.11883 -9.97036 -9.84211 -9.75743 -9.25596 -8.83181 -8.58021 -8.22700 -8.01170 -5.90688 -3.96759 3.33263 3.41273 3.45108 4.02968 4.33980 4.49360 4.49981 4.55733 4.71323 4.94832 5.13602 5.16991 5.27178 5.31968 5.35853 5.38416 5.49155 5.57038 5.60005 5.67441 5.74347 5.80570 5.85472 5.98228 6.02830 6.06500 6.08876 6.23036 6.25857 6.41614 6.47846 6.52582 6.54653 6.71938 6.79731 6.83058 7.03524 7.23166 7.34922 7.44195 7.51297 7.65899 7.74040 7.84526 8.11739 8.26108 8.55718 9.07869 9.67425 11.14750 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.002941 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.114998 B = 9516.673933 C = 9888.686238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.092 3.908 13 N -0.687 5.687 14 C 0.064 3.936 15 C -0.080 4.080 16 H 0.089 0.911 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.152 4.152 20 C 0.106 3.894 21 H 0.051 0.949 22 O -0.560 6.560 23 C -0.107 4.107 24 C -0.101 4.101 25 C -0.109 4.109 26 H 0.258 0.742 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.332 0.668 34 H 0.071 0.929 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.372 0.628 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -21.891 7.528 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.017 4.017 13 N -0.318 5.318 14 C -0.065 4.065 15 C -0.099 4.099 16 H 0.107 0.893 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.190 4.190 20 C 0.047 3.953 21 H 0.069 0.931 22 O -0.365 6.365 23 C -0.145 4.145 24 C -0.139 4.139 25 C -0.148 4.148 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.219 0.781 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.207 -20.857 7.336 22.506 hybrid contribution 1.164 0.015 0.562 1.293 sum -3.043 -20.842 7.897 22.495 Atomic orbital electron populations 1.69895 1.05802 1.26076 1.51076 1.24974 0.94825 0.98933 0.95343 0.86613 0.80158 0.84175 0.77492 1.19909 1.21118 1.21138 1.21285 0.92848 0.90868 1.50004 0.92873 1.18652 0.92584 0.91322 0.94415 1.21592 0.98585 0.94255 0.99940 1.21717 0.97650 0.98256 0.97716 1.21597 0.93890 0.89217 0.97010 1.60602 1.48752 1.05334 1.17121 1.22017 0.98001 0.96311 0.90212 1.21082 0.98865 0.93451 0.96507 0.89316 1.21602 0.97866 0.94556 1.01310 1.21413 1.00204 0.97062 0.96419 1.22253 1.00179 0.98240 0.98288 1.21766 0.86159 0.95564 0.91781 0.93139 1.86587 1.41457 1.40230 1.68183 1.21571 0.99167 0.96005 0.97796 1.21595 0.97169 0.94750 1.00366 1.21626 0.99548 0.95140 0.98454 0.93195 0.95648 0.93671 0.93433 0.94131 0.91803 0.94785 0.84986 0.91049 0.96002 0.92623 0.91592 0.92447 0.91244 0.91273 0.92092 0.78118 0.91144 0.90956 0.92347 0.94386 0.95235 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.30 8.56 -34.44 -0.29 -14.59 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.23 2.10 -91.78 -0.19 1.04 16 10 C -0.11 -2.24 5.14 -26.73 -0.14 -2.38 16 11 C -0.12 -2.08 5.19 -26.73 -0.14 -2.21 16 12 C 0.09 1.62 2.49 -67.71 -0.17 1.46 16 13 N -0.69 -10.36 6.31 -106.72 -0.67 -11.03 16 14 C 0.06 0.85 4.94 -3.82 -0.02 0.83 16 15 C -0.08 -0.90 2.25 -90.62 -0.20 -1.11 16 16 H 0.09 1.20 7.68 -51.93 -0.40 0.80 16 17 C -0.12 -1.13 4.97 -26.73 -0.13 -1.27 16 18 C -0.11 -0.96 5.78 -26.73 -0.15 -1.11 16 19 C -0.15 -1.09 5.64 -26.73 -0.15 -1.25 16 20 C 0.11 0.88 3.77 -26.71 -0.10 0.78 16 21 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 22 O -0.56 -5.18 11.97 -35.23 -0.42 -5.60 16 23 C -0.11 -1.05 4.95 -26.70 -0.13 -1.18 16 24 C -0.10 -2.06 5.43 -26.71 -0.14 -2.21 16 25 C -0.11 -2.64 4.99 -26.71 -0.13 -2.77 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.03 0.62 7.80 -51.93 -0.40 0.22 16 33 H 0.33 4.52 6.60 -39.29 -0.26 4.26 16 34 H 0.07 1.04 7.44 -51.93 -0.39 0.65 16 35 H 0.02 0.28 8.05 -51.93 -0.42 -0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.68 6.68 -51.93 -0.35 0.33 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.37 1.92 9.08 45.56 0.41 2.33 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.04 0.74 7.45 -51.93 -0.39 0.35 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -29.62 356.52 -10.68 -40.30 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.36 Total: 3.98 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -2.20 Total: -24.37 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.05 Total: -36.25 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.42 Total: -5.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.62 -10.68 -40.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.220 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds