Wall clock time and date at job start Tue Mar 31 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48496 * 109.47305 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46730 * 300.00323 * 3 2 1 6 6 H 1.48498 * 109.46735 * 59.99881 * 3 2 1 7 7 C 1.37882 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47391 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47338 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46933 * 299.99697 * 11 10 9 13 13 N 1.46903 * 109.47230 * 180.02562 * 12 11 10 14 14 C 1.46896 * 110.99913 * 155.00073 * 13 12 11 15 15 C 1.53006 * 109.47191 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46866 * 305.00159 * 15 14 13 17 17 C 1.52997 * 109.46974 * 64.99934 * 15 14 13 18 18 C 1.52996 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.46972 * 300.00293 * 18 17 15 20 20 C 1.52997 * 109.47415 * 59.99860 * 19 18 17 21 21 H 1.09001 * 109.46922 * 180.02562 * 20 19 18 22 22 O 1.42895 * 109.47356 * 60.00092 * 20 19 18 23 23 C 1.52999 * 109.47000 * 185.00344 * 15 14 13 24 24 C 1.52997 * 109.47033 * 60.00337 * 12 11 10 25 25 C 1.52997 * 109.47314 * 300.00404 * 9 7 2 26 26 H 0.96999 * 119.99826 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.46883 * 60.00180 * 9 7 2 28 28 H 1.08997 * 109.46767 * 60.00036 * 10 9 7 29 29 H 1.09006 * 109.47159 * 300.00061 * 10 9 7 30 30 H 1.09006 * 109.46978 * 180.02562 * 11 10 9 31 31 H 1.08997 * 109.47497 * 60.00073 * 11 10 9 32 32 H 1.08997 * 109.47336 * 300.00475 * 12 11 10 33 33 H 1.00898 * 110.99569 * 31.05104 * 13 12 11 34 34 H 1.09006 * 109.47351 * 60.00050 * 14 13 12 35 35 H 1.08998 * 109.47320 * 300.00266 * 14 13 12 36 36 H 1.09000 * 109.47140 * 60.00393 * 17 15 14 37 37 H 1.09001 * 109.47375 * 300.00376 * 17 15 14 38 38 H 1.08992 * 109.47534 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.47134 * 59.99508 * 18 17 15 40 40 H 1.09000 * 109.46986 * 299.99742 * 19 18 17 41 41 H 1.09001 * 109.47601 * 180.02562 * 19 18 17 42 42 H 0.96700 * 114.00205 * 59.99602 * 22 20 19 43 43 H 1.08993 * 109.47839 * 60.00073 * 23 15 14 44 44 H 1.09000 * 109.47160 * 299.99635 * 23 15 14 45 45 H 1.09003 * 109.47349 * 60.00008 * 24 12 11 46 46 H 1.08997 * 109.47403 * 179.97438 * 24 12 11 47 47 H 1.09003 * 109.46596 * 299.99674 * 25 9 7 48 48 H 1.08998 * 109.47463 * 59.99619 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 0.6013 -5.0690 1.2472 13 7 -0.1327 -6.3415 1.2469 14 6 -0.4987 -6.7384 2.6131 15 6 -1.2594 -8.0653 2.5723 16 1 -2.1144 -7.9734 1.9026 17 6 -0.3306 -9.1702 2.0649 18 6 -1.0913 -10.4969 2.0234 19 6 -1.5810 -10.8481 3.4298 20 6 -2.5098 -9.7433 3.9372 21 1 -2.8583 -9.9933 4.9392 22 8 -3.6306 -9.6224 3.0590 23 6 -1.7486 -8.4162 3.9788 24 6 -0.3929 -3.9061 1.2485 25 6 0.3719 -2.5805 1.2489 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 2.8726 -3.6047 0.8877 29 1 2.8713 -3.6040 -0.8923 30 1 2.1887 -5.8156 -0.0029 31 1 0.8533 -5.0442 -0.8922 32 1 1.2284 -5.0119 2.1369 33 1 0.4004 -7.0663 0.7904 34 1 -1.1313 -5.9700 3.0576 35 1 0.4047 -6.8561 3.2116 36 1 0.5245 -9.2620 2.7346 37 1 0.0180 -8.9201 1.0628 38 1 -0.4296 -11.2841 1.6624 39 1 -1.9462 -10.4047 1.3536 40 1 -0.7262 -10.9403 4.0997 41 1 -2.1227 -11.7936 3.4004 42 1 -4.1600 -10.4281 2.9837 43 1 -2.4103 -7.6291 4.3403 44 1 -0.8935 -8.5080 4.6485 45 1 -1.0200 -3.9633 0.3587 46 1 -1.0194 -3.9647 2.1384 47 1 0.9989 -2.5229 2.1387 48 1 -0.3364 -1.7520 1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328690.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:09 Heat of formation + Delta-G solvation = -115.192307 kcal Electronic energy + Delta-G solvation = -22846.918299 eV Core-core repulsion = 19705.514982 eV Total energy + Delta-G solvation = -3141.403317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41790 -39.51984 -37.03636 -35.55041 -34.15093 -32.23538 -31.40479 -30.82769 -29.56986 -26.67895 -25.27390 -23.47721 -23.24345 -22.13011 -21.69726 -20.66782 -20.30935 -18.39463 -17.67382 -16.99540 -16.57248 -16.42746 -16.07506 -15.57041 -15.34426 -14.95148 -14.71630 -14.63344 -14.53610 -14.06128 -13.69672 -13.38259 -13.31322 -13.13031 -12.98495 -12.90571 -12.71074 -12.46018 -12.38381 -12.09167 -12.06889 -11.95853 -11.81792 -11.68380 -11.54952 -11.33957 -11.14978 -10.87854 -10.70925 -10.53653 -10.46420 -10.35348 -9.27908 -8.06032 -6.20542 1.39605 1.41107 1.52674 2.43957 3.17627 3.21969 3.46261 3.79454 3.81006 3.97123 4.00446 4.09353 4.19790 4.37683 4.42666 4.46110 4.56254 4.57011 4.60905 4.64919 4.70196 4.73911 4.83793 4.86704 4.88698 4.91425 4.98856 5.03696 5.07955 5.12306 5.17864 5.26825 5.32466 5.35951 5.38199 5.41513 5.48166 5.50129 5.61775 5.65625 5.72063 6.04972 6.17528 6.23919 6.42802 6.61240 6.93095 6.99820 7.47469 8.98040 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.040919 B = 0.002941 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.114998 B = 9516.673933 C = 9888.686238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.099 4.099 11 C -0.107 4.107 12 C 0.103 3.897 13 N -0.689 5.689 14 C 0.065 3.935 15 C -0.071 4.071 16 H 0.062 0.938 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.105 3.895 21 H 0.066 0.934 22 O -0.583 6.583 23 C -0.110 4.110 24 C -0.091 4.091 25 C -0.100 4.100 26 H 0.259 0.741 27 H -0.010 1.010 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.036 0.964 33 H 0.345 0.655 34 H 0.054 0.946 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.389 0.611 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.025 0.975 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.567 -23.922 8.399 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.007 4.007 13 N -0.322 5.322 14 C -0.064 4.064 15 C -0.090 4.090 16 H 0.080 0.920 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.184 4.184 20 C 0.047 3.953 21 H 0.083 0.917 22 O -0.391 6.391 23 C -0.148 4.148 24 C -0.129 4.129 25 C -0.139 4.139 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.165 0.835 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.238 0.762 43 H 0.075 0.925 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.044 0.956 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.074 -22.919 8.204 24.536 hybrid contribution 0.760 0.659 0.277 1.043 sum -2.315 -22.260 8.481 23.933 Atomic orbital electron populations 1.70047 1.07211 1.26881 1.51605 1.25782 0.95672 1.02455 0.95006 0.85582 0.79135 0.79850 0.77547 1.19074 1.20696 1.20666 1.21672 0.93016 0.92388 1.50104 0.93026 1.18628 0.93063 0.92448 0.93209 1.21458 0.97809 0.94317 1.00136 1.21623 0.97930 0.97510 0.97451 1.21333 0.92959 0.89379 0.97016 1.60454 1.48473 1.04708 1.18548 1.22044 0.98302 0.96909 0.89132 1.20942 0.97923 0.92971 0.97133 0.91966 1.21585 0.97869 0.94650 1.01028 1.21395 0.99809 0.96567 0.97201 1.22221 1.00350 0.98454 0.97380 1.21807 0.86120 0.94921 0.92495 0.91655 1.86548 1.42119 1.41858 1.68541 1.21609 0.99676 0.96711 0.96835 1.21430 0.97361 0.94349 0.99808 1.21411 0.98748 0.95999 0.97723 0.93184 0.99153 0.93373 0.93250 0.90587 0.92498 0.94574 0.83502 0.92795 0.94938 0.91692 0.92175 0.91284 0.92469 0.90390 0.90369 0.76212 0.92545 0.89560 0.94015 0.93773 0.95648 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.92 11.32 21.45 0.24 -54.68 16 2 C 0.01 0.52 5.30 84.66 0.45 0.96 16 3 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -30.36 8.56 25.60 0.22 -30.14 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.04 2.33 2.10 -11.54 -0.02 2.31 16 10 C -0.10 -4.15 5.14 30.59 0.16 -3.99 16 11 C -0.11 -3.69 5.19 30.59 0.16 -3.53 16 12 C 0.10 3.52 2.49 44.91 0.11 3.64 16 13 N -0.69 -19.90 6.31 -491.56 -3.10 -23.00 16 14 C 0.07 1.66 4.94 86.31 0.43 2.09 16 15 C -0.07 -1.52 2.25 -10.79 -0.02 -1.54 16 16 H 0.06 1.68 7.68 -2.39 -0.02 1.66 16 17 C -0.11 -1.98 4.97 30.59 0.15 -1.83 16 18 C -0.11 -1.63 5.78 30.59 0.18 -1.46 16 19 C -0.15 -1.68 5.64 30.59 0.17 -1.51 16 20 C 0.11 1.53 3.77 30.61 0.12 1.64 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 O -0.58 -10.07 11.97 -148.98 -1.78 -11.86 16 23 C -0.11 -2.00 4.95 30.61 0.15 -1.85 16 24 C -0.09 -3.80 5.43 30.61 0.17 -3.64 16 25 C -0.10 -4.99 4.99 30.61 0.15 -4.84 16 26 H 0.26 14.72 8.31 -92.71 -0.77 13.94 16 27 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.08 2.12 8.12 -2.38 -0.02 2.10 16 31 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.25 7.80 -2.39 -0.02 1.23 16 33 H 0.34 8.62 6.60 -89.70 -0.59 8.03 16 34 H 0.05 1.56 7.44 -2.38 -0.02 1.54 16 35 H 0.03 0.78 8.05 -2.39 -0.02 0.76 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.11 6.68 -2.39 -0.02 1.09 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.98 7.68 -2.39 -0.02 0.96 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.39 3.40 9.08 -74.06 -0.67 2.73 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.75 7.45 -2.39 -0.02 1.74 16 47 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 Total: -1.00 -65.14 356.52 -0.40 -65.54 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -0.35 Total: 20.87 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 2.56 Total: -43.68 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -2.86 Total: -77.67 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.78 Total: -11.86 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.14 -0.40 -65.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328690.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.652 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds