Wall clock time and date at job start Tue Mar 31 2020 05:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99572 * 2 1 4 4 H 1.48506 * 109.46796 * 240.00142 * 3 2 1 5 5 H 1.48498 * 109.47309 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 120.00464 * 3 2 1 7 7 C 1.37873 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00024 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47052 * 300.00133 * 11 10 9 13 13 N 1.46899 * 109.47348 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00357 * 153.47594 * 13 12 11 15 15 H 1.08998 * 109.47471 * 33.79149 * 14 13 12 16 16 C 1.53000 * 109.47559 * 153.79151 * 14 13 12 17 17 C 1.52998 * 109.47570 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47119 * 299.99840 * 17 16 14 19 19 H 1.08998 * 109.46994 * 300.00442 * 18 17 16 20 20 C 1.52998 * 109.47119 * 180.02562 * 18 17 16 21 21 O 1.42895 * 109.47313 * 65.00328 * 20 18 17 22 22 C 1.53000 * 109.46769 * 59.99669 * 18 17 16 23 23 C 1.52998 * 109.47570 * 300.00055 * 22 18 17 24 24 C 1.52997 * 109.47354 * 60.00118 * 12 11 10 25 25 C 1.52995 * 109.47430 * 300.00371 * 9 7 2 26 26 H 0.97004 * 120.00447 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46835 * 60.00639 * 9 7 2 28 28 H 1.08998 * 109.47376 * 60.00224 * 10 9 7 29 29 H 1.09000 * 109.47245 * 299.99809 * 10 9 7 30 30 H 1.09001 * 109.47407 * 179.97438 * 11 10 9 31 31 H 1.08998 * 109.47184 * 59.99759 * 11 10 9 32 32 H 1.08999 * 109.47330 * 299.99966 * 12 11 10 33 33 H 1.00903 * 111.00367 * 29.51979 * 13 12 11 34 34 H 1.09001 * 109.46989 * 300.00326 * 16 14 13 35 35 H 1.09006 * 109.46973 * 59.99819 * 16 14 13 36 36 H 1.09001 * 109.47055 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.46904 * 59.99557 * 17 16 14 38 38 H 1.09005 * 109.46926 * 185.00293 * 20 18 17 39 39 H 1.08999 * 109.46993 * 304.99799 * 20 18 17 40 40 H 0.96697 * 114.00283 * 180.02562 * 21 20 18 41 41 H 1.09006 * 109.46973 * 60.00337 * 22 18 17 42 42 H 1.09001 * 109.46989 * 179.97438 * 22 18 17 43 43 H 1.09001 * 109.47055 * 180.02562 * 23 22 18 44 44 H 1.09000 * 109.46904 * 300.00443 * 23 22 18 45 45 H 1.08998 * 109.47376 * 60.00072 * 24 12 11 46 46 H 1.09000 * 109.47245 * 180.02562 * 24 12 11 47 47 H 1.08998 * 109.46820 * 299.99847 * 25 9 7 48 48 H 1.09001 * 109.47133 * 59.99685 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 6 0.6004 -5.0684 1.2477 13 7 -0.1336 -6.3409 1.2474 14 6 -0.4692 -6.7554 2.6162 15 1 -0.6641 -5.8730 3.2256 16 6 -1.7156 -7.6422 2.5894 17 6 -2.0656 -8.0734 4.0151 18 6 -0.8951 -8.8569 4.6127 19 1 -0.6999 -9.7395 4.0037 20 6 -1.2452 -9.2886 6.0382 21 8 -2.3373 -10.2095 6.0023 22 6 0.3514 -7.9701 4.6395 23 6 0.7013 -7.5389 3.2138 24 6 -0.3939 -3.9056 1.2477 25 6 0.3719 -2.5805 1.2489 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 2.8720 -3.6042 0.8894 29 1 2.8720 -3.6042 -0.8905 30 1 2.1888 -5.8155 -0.0016 31 1 0.8541 -5.0445 -0.8913 32 1 1.2267 -5.0109 2.1379 33 1 0.3891 -7.0598 0.7698 34 1 -2.5496 -7.0840 2.1640 35 1 -1.5207 -8.5247 1.9800 36 1 -2.9539 -8.7049 3.9960 37 1 -2.2606 -7.1907 4.6241 38 1 -0.3800 -9.7688 6.4952 39 1 -1.5268 -8.4137 6.6240 40 1 -2.6139 -10.5258 6.8732 41 1 0.1563 -7.0873 5.2485 42 1 1.1852 -8.5280 5.0656 43 1 1.5896 -6.9074 3.2329 44 1 0.8964 -8.4216 2.6048 45 1 -1.0203 -3.9631 0.3575 46 1 -1.0205 -3.9634 2.1377 47 1 0.9989 -2.5230 2.1387 48 1 -0.3364 -1.7520 1.2494 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:52 Heat of formation + Delta-G solvation = -97.731294 kcal Electronic energy + Delta-G solvation = -22942.024876 eV Core-core repulsion = 19801.378725 eV Total energy + Delta-G solvation = -3140.646151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.48036 -37.89972 -36.60369 -34.31349 -32.35626 -30.87085 -30.18565 -29.66631 -27.74276 -25.03434 -23.76690 -22.74996 -21.78483 -20.97702 -20.18298 -19.86852 -18.61208 -17.57047 -16.27328 -15.88783 -15.34547 -14.93956 -14.57630 -14.53686 -14.28721 -13.77334 -13.49810 -13.20927 -12.95789 -12.81446 -12.45821 -12.36298 -12.21357 -12.00368 -11.44776 -11.29140 -11.21819 -11.04458 -10.96566 -10.75558 -10.64240 -10.54192 -10.45799 -10.35074 -10.14808 -10.10721 -10.00411 -9.76737 -9.27525 -8.84804 -8.60182 -8.23756 -8.00613 -5.91826 -3.98117 3.34570 3.39353 3.41799 3.90335 4.34603 4.48526 4.52216 4.68547 4.87677 4.92493 5.13106 5.20597 5.30939 5.36913 5.40163 5.45467 5.47933 5.48889 5.55609 5.60221 5.74191 5.85989 5.94459 6.00708 6.03716 6.06354 6.18430 6.23548 6.37068 6.38330 6.43001 6.51047 6.51656 6.69989 6.78075 6.81749 7.01507 7.21522 7.32445 7.33292 7.49846 7.63997 7.72779 7.82701 8.10191 8.24386 8.54121 9.06033 9.66026 11.13530 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.033753 B = 0.003084 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.354960 B = 9075.481049 C = 9262.212482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.116 4.116 12 C 0.092 3.908 13 N -0.684 5.684 14 C 0.088 3.912 15 H 0.076 0.924 16 C -0.105 4.105 17 C -0.109 4.109 18 C -0.087 4.087 19 H 0.075 0.925 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.108 4.108 23 C -0.146 4.146 24 C -0.100 4.100 25 C -0.109 4.109 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.333 0.667 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.377 0.623 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 -18.393 10.636 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.144 4.144 11 C -0.154 4.154 12 C -0.016 4.016 13 N -0.313 5.313 14 C -0.022 4.022 15 H 0.095 0.905 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.105 4.105 19 H 0.094 0.906 20 C 0.001 3.999 21 O -0.378 6.378 22 C -0.147 4.147 23 C -0.185 4.185 24 C -0.139 4.139 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.151 0.849 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.223 0.777 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.869 -17.841 9.853 20.582 hybrid contribution 1.416 0.544 1.050 1.845 sum -1.452 -17.297 10.903 20.498 Atomic orbital electron populations 1.69873 1.05802 1.26317 1.50894 1.24964 0.94825 0.98907 0.95307 0.86730 0.79648 0.83501 0.78508 1.20374 1.21358 1.20424 1.21209 0.92776 0.90895 1.50286 0.92982 1.18642 0.92571 0.91296 0.94400 1.21592 0.98587 0.94268 0.99926 1.21727 0.97678 0.98260 0.97747 1.21598 0.93876 0.89141 0.97024 1.60684 1.49847 1.05463 1.15299 1.21610 0.93708 0.97156 0.89740 0.90529 1.21499 0.97835 0.99150 0.95851 1.21523 0.97555 0.99386 0.96266 1.21165 0.95707 0.98733 0.94904 0.90635 1.22269 0.88453 0.91643 0.97516 1.86489 1.52726 1.64253 1.34327 1.21448 0.96550 0.99276 0.97392 1.22253 0.99496 1.00418 0.96319 1.21606 0.97169 0.94773 1.00315 1.21624 0.99533 0.95148 0.98452 0.93073 0.95665 0.93683 0.93459 0.94103 0.91853 0.94580 0.84915 0.91210 0.92291 0.91323 0.92235 0.93924 0.93646 0.77704 0.91707 0.92120 0.91858 0.91950 0.92382 0.94418 0.95246 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 11.32 55.43 0.63 -25.05 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.11 -2.21 5.14 -26.73 -0.14 -2.34 16 11 C -0.12 -2.04 5.18 -26.73 -0.14 -2.18 16 12 C 0.09 1.58 2.29 -67.72 -0.16 1.42 16 13 N -0.68 -9.89 6.07 -99.75 -0.61 -10.49 16 14 C 0.09 1.11 2.27 -67.71 -0.15 0.96 16 15 H 0.08 1.09 7.23 -51.93 -0.38 0.72 16 16 C -0.11 -1.22 5.53 -26.73 -0.15 -1.37 16 17 C -0.11 -1.14 5.10 -26.73 -0.14 -1.28 16 18 C -0.09 -0.82 2.43 -90.62 -0.22 -1.04 16 19 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 20 C 0.08 0.64 6.43 37.16 0.24 0.88 16 21 O -0.57 -4.97 13.19 -35.23 -0.46 -5.44 16 22 C -0.11 -1.02 5.20 -26.73 -0.14 -1.16 16 23 C -0.15 -1.58 5.16 -26.73 -0.14 -1.72 16 24 C -0.10 -2.01 5.43 -26.71 -0.14 -2.15 16 25 C -0.11 -2.59 4.98 -26.71 -0.13 -2.73 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.63 7.20 -51.93 -0.37 0.26 16 33 H 0.33 4.39 8.05 -39.29 -0.32 4.07 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.75 7.82 -51.93 -0.41 0.34 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.38 1.55 9.12 45.56 0.42 1.96 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.75 7.54 -51.93 -0.39 0.35 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 46 H 0.04 0.72 7.56 -51.93 -0.39 0.32 16 47 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -29.30 359.42 -10.49 -39.80 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -8.46 Total: 3.89 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -1.99 Total: -24.58 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.02 Total: -35.55 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.46 Total: -5.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.30 -10.49 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.933 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds