Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00095 * 2 1 4 4 H 1.48510 * 109.46700 * 274.00001 * 3 2 1 5 5 H 1.48502 * 109.47352 * 33.99630 * 3 2 1 6 6 H 1.48503 * 109.47229 * 154.00322 * 3 2 1 7 7 C 1.37881 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99267 * 354.53157 * 7 2 1 9 9 C 1.50700 * 119.99923 * 174.53279 * 7 2 1 10 10 C 1.53008 * 109.46671 * 214.78839 * 9 7 2 11 11 C 1.53004 * 109.46754 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47049 * 60.00259 * 11 10 9 13 13 N 1.46901 * 109.47756 * 59.99903 * 12 11 10 14 14 C 1.46901 * 110.99852 * 84.82054 * 13 12 11 15 15 H 1.09007 * 109.47091 * 325.55004 * 14 13 12 16 16 C 1.52995 * 109.47049 * 85.55305 * 14 13 12 17 17 C 1.53003 * 109.47028 * 60.00254 * 16 14 13 18 18 C 1.52993 * 109.47540 * 59.99696 * 17 16 14 19 19 H 1.09008 * 109.47163 * 59.99884 * 18 17 16 20 20 C 1.52997 * 109.47419 * 180.02562 * 18 17 16 21 21 O 1.42903 * 109.46882 * 294.99889 * 20 18 17 22 22 C 1.53006 * 109.47073 * 300.00477 * 18 17 16 23 23 C 1.52997 * 109.47130 * 59.99661 * 22 18 17 24 24 C 1.53004 * 109.47466 * 299.99613 * 12 11 10 25 25 C 1.52999 * 109.46916 * 94.79526 * 9 7 2 26 26 H 0.97004 * 119.99846 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47321 * 334.78876 * 9 7 2 28 28 H 1.08999 * 109.46847 * 60.00356 * 10 9 7 29 29 H 1.08998 * 109.47027 * 300.00414 * 10 9 7 30 30 H 1.08999 * 109.46744 * 299.99813 * 11 10 9 31 31 H 1.09007 * 109.46776 * 180.02562 * 11 10 9 32 32 H 1.09003 * 109.47024 * 180.02562 * 12 11 10 33 33 H 1.00906 * 110.99736 * 320.87185 * 13 12 11 34 34 H 1.09001 * 109.47204 * 179.97438 * 16 14 13 35 35 H 1.08996 * 109.47500 * 300.00161 * 16 14 13 36 36 H 1.08997 * 109.47111 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46760 * 299.99822 * 17 16 14 38 38 H 1.08998 * 109.47105 * 54.99774 * 20 18 17 39 39 H 1.09007 * 109.47221 * 175.00052 * 20 18 17 40 40 H 0.96701 * 113.99702 * 179.97438 * 21 20 18 41 41 H 1.09001 * 109.47041 * 299.99760 * 22 18 17 42 42 H 1.09003 * 109.46899 * 180.02562 * 22 18 17 43 43 H 1.08997 * 109.46831 * 60.00551 * 23 22 18 44 44 H 1.09003 * 109.47078 * 180.02562 * 23 22 18 45 45 H 1.08992 * 109.47520 * 180.02562 * 24 12 11 46 46 H 1.09005 * 109.46840 * 300.00563 * 24 12 11 47 47 H 1.08998 * 109.46742 * 299.99336 * 25 9 7 48 48 H 1.08992 * 109.47655 * 59.99555 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4120 2.0952 -1.3968 5 1 1.4915 2.6269 0.7828 6 1 3.5865 1.4172 0.6137 7 6 2.0046 -1.1941 0.0005 8 1 1.4682 -2.1271 0.0901 9 6 3.5064 -1.1970 -0.1238 10 6 3.9491 -2.4210 -0.9282 11 6 5.4739 -2.4243 -1.0539 12 6 6.1005 -2.4769 0.3408 13 7 5.6632 -3.6991 1.0285 14 6 6.5153 -4.8399 0.6672 15 1 6.8312 -4.7429 -0.3716 16 6 7.7469 -4.8641 1.5747 17 6 7.3034 -5.0003 3.0327 18 6 6.5159 -6.3003 3.2070 19 1 7.1481 -7.1469 2.9389 20 6 6.0719 -6.4362 4.6648 21 8 7.2218 -6.5757 5.5018 22 6 5.2843 -6.2762 2.2994 23 6 5.7278 -6.1400 0.8415 24 6 5.6579 -1.2530 1.1453 25 6 4.1335 -1.2493 1.2708 26 1 -0.4850 0.8401 0.0004 27 1 3.8305 -0.2901 -0.6342 28 1 3.5023 -2.3837 -1.9218 29 1 3.6249 -3.3278 -0.4178 30 1 5.7984 -1.5174 -1.5642 31 1 5.7893 -3.2961 -1.6274 32 1 7.1868 -2.4788 0.2513 33 1 4.6931 -3.8963 0.8334 34 1 8.3789 -5.7108 1.3069 35 1 8.3079 -3.9379 1.4506 36 1 8.1808 -5.0171 3.6792 37 1 6.6712 -4.1538 3.3007 38 1 5.5140 -5.5473 4.9591 39 1 5.4366 -7.3157 4.7707 40 1 7.0150 -6.6664 6.4421 41 1 4.6520 -5.4297 2.5674 42 1 4.7230 -7.2022 2.4239 43 1 6.3599 -6.9865 0.5735 44 1 4.8504 -6.1223 0.1949 45 1 6.1046 -1.2902 2.1388 46 1 5.9824 -0.3460 0.6350 47 1 3.8181 -0.3774 1.8438 48 1 3.8094 -2.1562 1.7812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329472.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -90.221641 kcal Electronic energy + Delta-G solvation = -23805.992754 eV Core-core repulsion = 20665.672245 eV Total energy + Delta-G solvation = -3140.320508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.67222 -38.05208 -36.46269 -33.74889 -32.20617 -30.74578 -30.37544 -29.96724 -28.02851 -25.03292 -24.48739 -22.61143 -21.80414 -20.92385 -20.51424 -19.35467 -17.97981 -17.34211 -16.75494 -15.94592 -15.51037 -15.05649 -14.58912 -14.53597 -14.18401 -13.62633 -13.43941 -13.17241 -12.95376 -12.71882 -12.63226 -12.32315 -12.06145 -11.97821 -11.81233 -11.49264 -11.43652 -11.18885 -10.98735 -10.77009 -10.60300 -10.51183 -10.39857 -10.21975 -10.10577 -10.01672 -9.81160 -9.68415 -9.41281 -9.10250 -8.77496 -8.44475 -7.94244 -6.03425 -4.00642 3.30886 3.40397 3.44798 4.10320 4.46572 4.47193 4.73451 4.82337 4.96505 5.12422 5.26763 5.31036 5.34611 5.39385 5.47635 5.48479 5.52467 5.59930 5.64131 5.67766 5.72329 5.85968 5.94790 6.00431 6.05152 6.12532 6.17253 6.26847 6.27809 6.32320 6.37862 6.44145 6.47155 6.51008 6.61229 6.67860 6.71015 6.86186 7.02712 7.18123 7.43343 7.49910 7.51065 7.63362 7.82516 7.85853 8.58267 9.02428 9.61511 11.10347 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.004337 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.408220 B = 6454.409159 C = 6726.956096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.873 3.127 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.508 4.508 8 H 0.070 0.930 9 C 0.016 3.984 10 C -0.100 4.100 11 C -0.151 4.151 12 C 0.094 3.906 13 N -0.673 5.673 14 C 0.085 3.915 15 H 0.040 0.960 16 C -0.104 4.104 17 C -0.099 4.099 18 C -0.081 4.081 19 H 0.066 0.934 20 C 0.079 3.921 21 O -0.575 6.575 22 C -0.108 4.108 23 C -0.118 4.118 24 C -0.108 4.108 25 C -0.107 4.107 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.349 0.651 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.375 0.625 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.046 0.954 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.761 -11.803 5.300 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.183 1.183 7 C -0.546 4.546 8 H 0.088 0.912 9 C -0.003 4.003 10 C -0.138 4.138 11 C -0.190 4.190 12 C -0.015 4.015 13 N -0.308 5.308 14 C -0.025 4.025 15 H 0.057 0.943 16 C -0.142 4.142 17 C -0.137 4.137 18 C -0.099 4.099 19 H 0.085 0.915 20 C 0.001 3.999 21 O -0.380 6.380 22 C -0.146 4.146 23 C -0.156 4.156 24 C -0.146 4.146 25 C -0.146 4.146 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.171 0.829 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.221 0.779 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.065 0.935 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.233 -11.502 5.297 19.809 hybrid contribution -0.332 0.738 -0.465 0.933 sum 14.900 -10.764 4.832 19.006 Atomic orbital electron populations 1.69924 1.06362 1.26753 1.51273 1.25052 0.94612 0.98968 0.94557 0.86910 0.80855 0.83902 0.78218 1.20727 1.21709 1.18329 1.21043 0.89434 0.94340 1.49787 0.91199 1.19128 0.96018 0.93506 0.91630 1.21515 0.91968 0.99847 1.00447 1.22266 0.98552 1.00709 0.97487 1.21484 0.97586 0.90764 0.91708 1.60722 1.07257 1.02026 1.60756 1.21474 0.94049 0.90505 0.96512 0.94252 1.21507 0.96320 1.00664 0.95720 1.21354 0.99578 0.97184 0.95568 1.21082 0.97385 0.99170 0.92270 0.91507 1.22287 0.87170 0.99338 0.91095 1.86475 1.33678 1.96660 1.21156 1.21424 0.96929 1.01994 0.94224 1.21668 0.99873 0.97157 0.96884 1.21587 0.98702 0.95496 0.98845 1.21760 0.91758 1.00994 1.00042 0.92866 0.95548 0.92841 0.93299 0.92269 0.93631 0.91933 0.82857 0.92817 0.92373 0.92648 0.90369 0.93317 0.94155 0.77874 0.90384 0.92635 0.91859 0.91832 0.92833 0.93182 0.93510 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.58 26.53 -169.99 -4.51 17.07 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.08 6.06 56.52 0.34 -5.74 16 7 C -0.51 -13.97 8.86 -34.44 -0.31 -14.27 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.02 0.36 1.65 -91.77 -0.15 0.21 16 10 C -0.10 -1.92 4.93 -26.73 -0.13 -2.05 16 11 C -0.15 -2.40 5.50 -26.73 -0.15 -2.55 16 12 C 0.09 1.42 2.67 -67.71 -0.18 1.24 16 13 N -0.67 -9.36 4.10 -99.74 -0.41 -9.77 16 14 C 0.08 1.01 2.63 -67.72 -0.18 0.84 16 15 H 0.04 0.49 7.10 -51.93 -0.37 0.12 16 16 C -0.10 -1.19 5.52 -26.73 -0.15 -1.34 16 17 C -0.10 -1.18 4.94 -26.73 -0.13 -1.31 16 18 C -0.08 -0.88 2.43 -90.62 -0.22 -1.10 16 19 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 20 C 0.08 0.79 6.43 37.16 0.24 1.03 16 21 O -0.57 -5.91 13.20 -35.23 -0.46 -6.37 16 22 C -0.11 -1.17 5.04 -26.73 -0.13 -1.30 16 23 C -0.12 -1.28 5.30 -26.73 -0.14 -1.43 16 24 C -0.11 -1.84 5.64 -26.75 -0.15 -1.99 16 25 C -0.11 -2.20 4.70 -26.75 -0.13 -2.32 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.03 0.62 5.65 -51.93 -0.29 0.33 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.92 6.26 -51.93 -0.32 0.59 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.66 7.42 -51.92 -0.39 0.27 16 32 H 0.06 0.88 7.16 -51.93 -0.37 0.51 16 33 H 0.35 5.33 4.98 -39.29 -0.20 5.13 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.70 7.46 -51.93 -0.39 0.31 16 36 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 37 H 0.08 1.06 7.60 -51.93 -0.39 0.66 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.04 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.38 2.18 9.12 45.56 0.42 2.59 16 41 H 0.08 0.96 7.47 -51.93 -0.39 0.57 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.05 1.03 7.03 -51.93 -0.37 0.66 16 48 H 0.06 1.19 7.20 -51.93 -0.37 0.82 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -29.89 347.95 -9.48 -39.37 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.11 Total: 5.83 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -2.01 Total: -24.47 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.36 Total: -36.69 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.46 Total: -6.37 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.51 Total: 17.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.89 -9.48 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329472.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.849 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds