Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47814 * 2 1 4 4 C 1.53083 * 109.48245 * 239.96103 * 2 1 3 5 5 C 1.53181 * 109.16665 * 182.40618 * 4 2 1 6 6 H 1.09003 * 109.61289 * 297.07645 * 5 4 2 7 7 N 1.46900 * 109.54675 * 176.84912 * 5 4 2 8 8 C 1.46896 * 110.99925 * 155.44409 * 7 5 4 9 9 C 1.53000 * 109.47261 * 154.99966 * 8 7 5 10 10 C 1.52997 * 109.47060 * 59.99962 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 C 1.50703 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 120.00134 * 12 11 10 14 14 C 1.37880 * 119.99788 * 300.00202 * 12 11 10 15 15 N 1.31510 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99568 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47470 * 90.00234 * 16 14 12 18 18 H 1.48501 * 109.47000 * 209.99981 * 16 14 12 19 19 H 1.48498 * 109.47335 * 329.99935 * 16 14 12 20 20 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 11 10 22 22 C 1.53182 * 109.03492 * 56.98005 * 5 4 2 23 23 C 1.53093 * 109.16347 * 303.02123 * 22 5 4 24 24 O 1.42901 * 109.47986 * 120.01866 * 2 1 3 25 25 H 1.09000 * 109.47138 * 299.97571 * 1 2 3 26 26 H 1.08994 * 109.47340 * 59.98141 * 1 2 3 27 27 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47262 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46778 * 300.01628 * 3 2 1 30 30 H 1.09001 * 109.47660 * 60.01964 * 3 2 1 31 31 H 1.09009 * 109.52410 * 62.50517 * 4 2 1 32 32 H 1.08998 * 109.52491 * 302.31334 * 4 2 1 33 33 H 1.00897 * 110.99728 * 279.39555 * 7 5 4 34 34 H 1.09004 * 109.47535 * 35.00116 * 8 7 5 35 35 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.47194 * 300.00312 * 9 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 40 40 H 0.96996 * 119.99480 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46935 * 299.99411 * 20 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 20 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 20 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 20 11 45 45 H 1.08996 * 109.51916 * 62.92816 * 22 5 4 46 46 H 1.08994 * 109.52243 * 183.05243 * 22 5 4 47 47 H 1.08995 * 109.47953 * 177.58884 * 23 22 5 48 48 H 1.08999 * 109.48050 * 297.62804 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2493 5 6 3.5711 -0.7710 -1.2120 6 1 3.9702 0.2429 -1.2415 7 7 4.0672 -1.5283 -2.3689 8 6 5.4407 -1.1325 -2.7074 9 6 6.1374 -2.2822 -3.4380 10 6 5.3705 -2.6107 -4.7204 11 6 5.3374 -1.3773 -5.6251 12 6 4.5815 -1.7006 -6.8881 13 1 3.6935 -1.1419 -7.1439 14 6 5.0238 -2.7099 -7.7169 15 7 6.1055 -3.3899 -7.4056 16 14 4.0872 -3.1102 -9.2827 17 1 4.6226 -2.2944 -10.4022 18 1 4.2472 -4.5520 -9.6003 19 1 2.6472 -2.8025 -9.0906 20 6 4.6408 -0.2275 -4.8945 21 6 5.4077 0.1011 -3.6120 22 6 4.0177 -1.4600 0.0812 23 6 3.4307 -0.7090 1.2793 24 8 2.0065 -0.6740 1.1665 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6772 1.9563 0.8901 31 1 1.7149 -0.1846 -2.1398 32 1 1.6443 -1.7376 -1.2706 33 1 4.0076 -2.5218 -2.2031 34 1 5.9871 -0.8984 -1.7938 35 1 7.1568 -1.9886 -3.6888 36 1 6.1609 -3.1610 -2.7935 37 1 5.8665 -3.4300 -5.2407 38 1 4.3513 -2.9044 -4.4692 39 1 6.3566 -1.0836 -5.8763 40 1 6.4163 -4.1001 -7.9885 41 1 3.6216 -0.5212 -4.6433 42 1 4.6177 0.6514 -5.5389 43 1 4.9117 0.9204 -3.0919 44 1 6.4269 0.3947 -3.8633 45 1 3.6614 -2.4900 0.0868 46 1 5.1059 -1.4506 0.1418 47 1 3.7100 -1.2198 2.2007 48 1 3.8192 0.3093 1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -75.029027 kcal Electronic energy + Delta-G solvation = -23859.835742 eV Core-core repulsion = 20720.174035 eV Total energy + Delta-G solvation = -3139.661707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21435 -38.13503 -35.03504 -33.68041 -32.67769 -30.67214 -29.61596 -28.62282 -27.46235 -27.20104 -24.38108 -23.52560 -21.85900 -21.16207 -20.47355 -19.28276 -18.12762 -16.27843 -16.24761 -16.16552 -15.19751 -14.86761 -14.66231 -14.43156 -14.26322 -13.73689 -13.49691 -13.10171 -12.88300 -12.54080 -12.40320 -12.20795 -12.06415 -11.90022 -11.79641 -11.53212 -11.29953 -11.19428 -11.15441 -10.98517 -10.92221 -10.74997 -10.56371 -10.19671 -10.05061 -10.01271 -9.70194 -9.49102 -9.18365 -8.70237 -8.59070 -8.17117 -7.87394 -5.87386 -3.92071 3.36141 3.42746 3.46714 3.65972 4.32653 4.52729 4.69693 4.74084 4.77476 4.96260 5.10792 5.17823 5.28296 5.40319 5.42161 5.46222 5.52818 5.54369 5.57864 5.64784 5.69579 5.79576 5.81585 5.89656 5.91403 5.97907 6.14912 6.20800 6.25269 6.31407 6.38526 6.44630 6.50609 6.71103 6.81553 6.91724 7.12400 7.20752 7.37816 7.49328 7.53437 7.68475 7.78521 7.89104 8.21032 8.30191 8.62708 9.12396 9.71609 11.18046 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.004114 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.208175 B = 6803.616060 C = 7264.191776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.111 3.889 3 C -0.179 4.179 4 C -0.127 4.127 5 C 0.087 3.913 6 H 0.077 0.923 7 N -0.665 5.665 8 C 0.095 3.905 9 C -0.120 4.120 10 C -0.100 4.100 11 C 0.052 3.948 12 C -0.505 4.505 13 H 0.052 0.948 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.886 3.114 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.186 4.186 23 C 0.064 3.936 24 O -0.377 6.377 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.339 0.661 34 H 0.024 0.976 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.017 0.983 40 H 0.257 0.743 41 H 0.062 0.938 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 6.136 16.941 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.071 3.929 3 C -0.236 4.236 4 C -0.166 4.166 5 C -0.023 4.023 6 H 0.095 0.905 7 N -0.295 5.295 8 C -0.014 4.014 9 C -0.158 4.158 10 C -0.138 4.138 11 C 0.034 3.966 12 C -0.543 4.543 13 H 0.070 0.930 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.714 3.286 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.135 4.135 21 C -0.141 4.141 22 C -0.226 4.226 23 C -0.013 4.013 24 O -0.296 6.296 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.158 0.842 34 H 0.042 0.958 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.728 6.323 16.509 18.584 hybrid contribution 0.399 -0.635 -0.322 0.816 sum -5.329 5.687 16.188 17.966 Atomic orbital electron populations 1.21741 0.92507 1.02821 1.02289 1.21531 0.94686 0.91136 0.85528 1.22451 1.01948 0.96602 1.02617 1.22154 0.95302 1.01673 0.97449 1.21661 0.94965 0.97930 0.87775 0.90480 1.60526 1.22984 1.09434 1.36546 1.21484 0.87397 0.96867 0.95678 1.21827 0.99593 0.95364 0.99059 1.21489 0.98092 1.02167 0.92101 1.18594 0.95280 0.90365 0.92409 1.21264 1.10802 1.16709 1.05537 0.92983 1.24953 0.95043 0.96343 0.97733 1.69885 1.23138 1.22810 1.37450 0.86692 0.80437 0.77341 0.84081 1.20915 1.21419 1.20022 1.21469 0.99904 0.98764 0.93396 1.21537 0.99718 0.95274 0.97585 1.22984 1.01178 1.01196 0.97221 1.22467 0.81438 0.99404 0.97983 1.87937 1.20718 1.77534 1.43428 0.92127 0.90983 0.91838 0.91996 0.91262 0.92167 0.90125 0.91131 0.84153 0.95834 0.92518 0.94332 0.89754 0.93906 0.96528 0.93321 0.91962 0.94762 0.94261 0.93072 0.91023 0.91262 0.89377 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 2 C 0.11 1.21 1.11 -90.58 -0.10 1.11 16 3 C -0.18 -1.76 7.94 37.16 0.29 -1.47 16 4 C -0.13 -1.57 4.53 -26.60 -0.12 -1.69 16 5 C 0.09 1.11 2.05 -67.53 -0.14 0.97 16 6 H 0.08 1.01 5.60 -51.93 -0.29 0.72 16 7 N -0.66 -10.15 4.58 -99.54 -0.46 -10.60 16 8 C 0.09 1.56 2.64 -67.71 -0.18 1.38 16 9 C -0.12 -2.26 5.30 -26.73 -0.14 -2.40 16 10 C -0.10 -2.33 4.82 -26.73 -0.13 -2.46 16 11 C 0.05 1.30 2.10 -91.77 -0.19 1.10 16 12 C -0.50 -14.07 8.56 -34.44 -0.29 -14.37 16 13 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.76 11.32 55.43 0.63 -25.13 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 C -0.10 -2.08 4.98 -26.73 -0.13 -2.21 16 21 C -0.10 -1.83 5.52 -26.73 -0.15 -1.98 16 22 C -0.19 -2.09 5.38 -26.59 -0.14 -2.24 16 23 C 0.06 0.67 6.52 37.21 0.24 0.91 16 24 O -0.38 -4.56 10.24 -35.23 -0.36 -4.92 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.34 5.18 7.90 -39.29 -0.31 4.87 16 34 H 0.02 0.36 7.15 -51.93 -0.37 -0.01 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 38 H 0.04 1.00 7.48 -51.93 -0.39 0.61 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.06 1.36 7.60 -51.93 -0.39 0.97 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.63 7.43 -51.93 -0.39 0.25 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 46 H 0.07 0.76 7.48 -51.93 -0.39 0.38 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.05 0.49 6.34 -51.93 -0.33 0.16 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -28.49 350.59 -9.76 -38.25 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.89 Total: 3.24 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -0.95 Total: -22.74 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.17 Total: -35.74 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.36 Total: -4.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.49 -9.76 -38.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.777 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds