Wall clock time and date at job start Tue Mar 31 2020 05:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47814 * 2 1 4 4 C 1.53083 * 109.48245 * 239.96103 * 2 1 3 5 5 C 1.53181 * 109.16665 * 182.40618 * 4 2 1 6 6 H 1.09003 * 109.61289 * 297.07645 * 5 4 2 7 7 N 1.46900 * 109.54675 * 176.84912 * 5 4 2 8 8 C 1.46896 * 110.99925 * 155.44409 * 7 5 4 9 9 C 1.53000 * 109.47261 * 154.99966 * 8 7 5 10 10 C 1.52997 * 109.47060 * 59.99962 * 9 8 7 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 8 12 12 C 1.50703 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 120.00134 * 12 11 10 14 14 C 1.37880 * 119.99788 * 300.00202 * 12 11 10 15 15 N 1.31510 * 119.99893 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99568 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47470 * 90.00234 * 16 14 12 18 18 H 1.48501 * 109.47000 * 209.99981 * 16 14 12 19 19 H 1.48498 * 109.47335 * 329.99935 * 16 14 12 20 20 C 1.53005 * 109.47159 * 300.00546 * 11 10 9 21 21 C 1.52997 * 109.47452 * 59.99536 * 20 11 10 22 22 C 1.53182 * 109.03492 * 56.98005 * 5 4 2 23 23 C 1.53093 * 109.16347 * 303.02123 * 22 5 4 24 24 O 1.42901 * 109.47986 * 120.01866 * 2 1 3 25 25 H 1.09000 * 109.47138 * 299.97571 * 1 2 3 26 26 H 1.08994 * 109.47340 * 59.98141 * 1 2 3 27 27 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47262 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46778 * 300.01628 * 3 2 1 30 30 H 1.09001 * 109.47660 * 60.01964 * 3 2 1 31 31 H 1.09009 * 109.52410 * 62.50517 * 4 2 1 32 32 H 1.08998 * 109.52491 * 302.31334 * 4 2 1 33 33 H 1.00897 * 110.99728 * 279.39555 * 7 5 4 34 34 H 1.09004 * 109.47535 * 35.00116 * 8 7 5 35 35 H 1.09002 * 109.47398 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.47194 * 300.00312 * 9 8 7 37 37 H 1.08996 * 109.47853 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47153 * 300.00319 * 10 9 8 39 39 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 40 40 H 0.96996 * 119.99480 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.46935 * 299.99411 * 20 11 10 42 42 H 1.09001 * 109.46812 * 179.97438 * 20 11 10 43 43 H 1.08993 * 109.47194 * 179.97438 * 21 20 11 44 44 H 1.09002 * 109.46695 * 59.99734 * 21 20 11 45 45 H 1.08996 * 109.51916 * 62.92816 * 22 5 4 46 46 H 1.08994 * 109.52243 * 183.05243 * 22 5 4 47 47 H 1.08995 * 109.47953 * 177.58884 * 23 22 5 48 48 H 1.08999 * 109.48050 * 297.62804 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0405 -0.7224 -1.2493 5 6 3.5711 -0.7710 -1.2120 6 1 3.9702 0.2429 -1.2415 7 7 4.0672 -1.5283 -2.3689 8 6 5.4407 -1.1325 -2.7074 9 6 6.1374 -2.2822 -3.4380 10 6 5.3705 -2.6107 -4.7204 11 6 5.3374 -1.3773 -5.6251 12 6 4.5815 -1.7006 -6.8881 13 1 3.6935 -1.1419 -7.1439 14 6 5.0238 -2.7099 -7.7169 15 7 6.1055 -3.3899 -7.4056 16 14 4.0872 -3.1102 -9.2827 17 1 4.6226 -2.2944 -10.4022 18 1 4.2472 -4.5520 -9.6003 19 1 2.6472 -2.8025 -9.0906 20 6 4.6408 -0.2275 -4.8945 21 6 5.4077 0.1011 -3.6120 22 6 4.0177 -1.4600 0.0812 23 6 3.4307 -0.7090 1.2793 24 8 2.0065 -0.6740 1.1665 25 1 -0.3633 0.5135 0.8902 26 1 -0.3634 0.5141 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6772 1.9563 0.8901 31 1 1.7149 -0.1846 -2.1398 32 1 1.6443 -1.7376 -1.2706 33 1 4.0076 -2.5218 -2.2031 34 1 5.9871 -0.8984 -1.7938 35 1 7.1568 -1.9886 -3.6888 36 1 6.1609 -3.1610 -2.7935 37 1 5.8665 -3.4300 -5.2407 38 1 4.3513 -2.9044 -4.4692 39 1 6.3566 -1.0836 -5.8763 40 1 6.4163 -4.1001 -7.9885 41 1 3.6216 -0.5212 -4.6433 42 1 4.6177 0.6514 -5.5389 43 1 4.9117 0.9204 -3.0919 44 1 6.4269 0.3947 -3.8633 45 1 3.6614 -2.4900 0.0868 46 1 5.1059 -1.4506 0.1418 47 1 3.7100 -1.2198 2.2007 48 1 3.8192 0.3093 1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:28 Heat of formation + Delta-G solvation = -90.701102 kcal Electronic energy + Delta-G solvation = -23860.515334 eV Core-core repulsion = 20720.174035 eV Total energy + Delta-G solvation = -3140.341299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15551 -39.57976 -36.42611 -34.57905 -34.41335 -32.16930 -31.23094 -29.91420 -28.41712 -28.18581 -26.31910 -24.42610 -23.28878 -22.49128 -22.06543 -20.21468 -19.67165 -18.33772 -17.20321 -17.10451 -16.62539 -16.25451 -16.00308 -15.70891 -15.33908 -14.96627 -14.66842 -14.51056 -14.17874 -13.95406 -13.78740 -13.30368 -13.23256 -12.97229 -12.94181 -12.84231 -12.70184 -12.58671 -12.49336 -12.44679 -12.18211 -12.07704 -11.94353 -11.84161 -11.67917 -11.55565 -11.10447 -10.89906 -10.59746 -10.47776 -10.36908 -10.25141 -9.07499 -8.02228 -6.15045 1.40851 1.41771 1.51930 2.46445 2.85455 3.21187 3.24782 3.79072 3.85954 3.94256 4.06211 4.11018 4.18516 4.22457 4.30543 4.38245 4.46648 4.49709 4.69100 4.71227 4.77717 4.81233 4.82901 4.90801 4.91344 4.93810 4.95928 5.05125 5.06510 5.10787 5.12305 5.18091 5.25024 5.29016 5.35670 5.36901 5.44756 5.52174 5.68461 5.69135 5.83018 6.19048 6.30785 6.32922 6.38741 6.53106 6.60626 6.98223 7.52015 9.01038 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.004114 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.208175 B = 6803.616060 C = 7264.191776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.110 3.890 3 C -0.176 4.176 4 C -0.124 4.124 5 C 0.090 3.910 6 H 0.079 0.921 7 N -0.677 5.677 8 C 0.105 3.895 9 C -0.113 4.113 10 C -0.088 4.088 11 C 0.049 3.951 12 C -0.529 4.529 13 H 0.045 0.955 14 C 0.012 3.988 15 N -0.917 5.917 16 Si 0.947 3.053 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.271 1.271 20 C -0.087 4.087 21 C -0.098 4.098 22 C -0.179 4.179 23 C 0.062 3.938 24 O -0.391 6.391 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.339 0.661 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.035 0.965 39 H -0.017 1.017 40 H 0.258 0.742 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 6.950 18.461 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.071 3.929 3 C -0.233 4.233 4 C -0.162 4.162 5 C -0.020 4.020 6 H 0.097 0.903 7 N -0.308 5.308 8 C -0.004 4.004 9 C -0.151 4.151 10 C -0.126 4.126 11 C 0.030 3.970 12 C -0.567 4.567 13 H 0.063 0.937 14 C -0.186 4.186 15 N -0.557 5.557 16 Si 0.774 3.226 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.219 4.219 23 C -0.015 4.015 24 O -0.311 6.311 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.001 0.999 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.121 0.879 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.258 7.147 18.040 20.388 hybrid contribution 0.555 -0.895 -0.821 1.335 sum -5.703 6.252 17.218 19.185 Atomic orbital electron populations 1.21763 0.91755 1.02715 1.03135 1.21583 0.95351 0.91503 0.84501 1.22425 1.01888 0.95780 1.03244 1.22107 0.95120 1.01051 0.97944 1.21674 0.95021 0.97697 0.87615 0.90273 1.60473 1.22264 1.09726 1.38360 1.21320 0.88174 0.94952 0.95973 1.21705 0.98701 0.97363 0.97344 1.21209 0.97799 0.99972 0.93653 1.18585 0.93330 0.92547 0.92517 1.21640 1.10946 1.16943 1.07187 0.93705 1.25684 0.95901 0.96239 1.00731 1.70028 1.24246 1.23054 1.38401 0.85721 0.79300 0.77209 0.80405 1.20329 1.20919 1.19520 1.21283 0.99569 0.96840 0.94773 1.21491 0.99293 0.96776 0.96077 1.22896 1.01575 1.00706 0.96693 1.22591 0.80650 1.00077 0.98138 1.87930 1.21707 1.77819 1.43671 0.91327 0.90106 0.92452 0.92026 0.90886 0.91324 0.91097 0.92354 0.84181 0.93147 0.93204 0.92420 0.93452 0.94655 0.99895 0.93336 0.92623 0.95525 0.91906 0.93090 0.91708 0.90529 0.87913 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.85 71.98 0.64 -1.77 16 2 C 0.11 2.20 1.11 -10.77 -0.01 2.19 16 3 C -0.18 -3.03 7.94 71.98 0.57 -2.46 16 4 C -0.12 -2.88 4.53 30.68 0.14 -2.74 16 5 C 0.09 2.09 2.05 45.04 0.09 2.19 16 6 H 0.08 1.84 5.60 -2.39 -0.01 1.83 16 7 N -0.68 -19.61 4.58 -468.84 -2.15 -21.76 16 8 C 0.11 3.24 2.64 44.92 0.12 3.35 16 9 C -0.11 -4.16 5.30 30.59 0.16 -4.00 16 10 C -0.09 -4.17 4.82 30.59 0.15 -4.02 16 11 C 0.05 2.49 2.10 -11.54 -0.02 2.47 16 12 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 13 H 0.04 2.55 7.74 -2.91 -0.02 2.53 16 14 C 0.01 0.70 5.30 84.66 0.45 1.15 16 15 N -0.92 -54.18 11.32 21.45 0.24 -53.94 16 16 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 C -0.09 -3.70 4.98 30.60 0.15 -3.55 16 21 C -0.10 -3.32 5.52 30.59 0.17 -3.15 16 22 C -0.18 -3.58 5.38 30.69 0.17 -3.41 16 23 C 0.06 1.13 6.52 72.01 0.47 1.60 16 24 O -0.39 -8.62 10.24 -148.98 -1.52 -10.15 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.06 8.14 -2.38 -0.02 1.05 16 28 H 0.06 1.06 4.98 -2.39 -0.01 1.05 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.34 9.91 7.90 -89.70 -0.71 9.20 16 34 H 0.05 1.34 7.15 -2.39 -0.02 1.32 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 37 H 0.05 2.58 6.07 -2.39 -0.01 2.57 16 38 H 0.03 1.68 7.48 -2.39 -0.02 1.66 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.06 2.43 7.60 -2.39 -0.02 2.41 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.85 7.43 -2.39 -0.02 1.83 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 46 H 0.08 1.43 7.48 -2.39 -0.02 1.41 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.06 0.99 6.34 -2.39 -0.02 0.97 16 Total: -1.00 -61.90 350.59 2.26 -59.64 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.20 Total: 21.43 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 3.45 Total: -42.14 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -1.90 Total: -75.70 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -1.52 Total: -10.15 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -61.90 2.26 -59.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.062 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds