Wall clock time and date at job start Tue Mar 31 2020 05:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47857 * 2 1 4 4 C 1.53284 * 109.45541 * 240.01212 * 2 1 3 5 5 C 1.53179 * 109.06259 * 297.55825 * 4 2 1 6 6 H 1.08996 * 109.54820 * 62.96788 * 5 4 2 7 7 N 1.46899 * 109.54571 * 183.14884 * 5 4 2 8 8 C 1.46900 * 110.99935 * 206.33686 * 7 5 4 9 9 C 1.53008 * 109.46822 * 205.85558 * 8 7 5 10 10 C 1.53002 * 109.47002 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.46862 * 60.00440 * 10 9 8 12 12 C 1.50693 * 109.47162 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99718 * 119.99990 * 12 11 10 14 14 C 1.37871 * 120.00301 * 300.00271 * 12 11 10 15 15 N 1.31514 * 120.00221 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00317 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46648 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47599 * 119.99604 * 16 14 12 19 19 H 1.48505 * 109.47132 * 240.00104 * 16 14 12 20 20 C 1.53006 * 109.47017 * 299.99970 * 11 10 9 21 21 C 1.52996 * 109.47455 * 60.00037 * 20 11 10 22 22 C 1.53183 * 109.10790 * 303.05735 * 5 4 2 23 23 C 1.53091 * 109.16184 * 57.02703 * 22 5 4 24 24 O 1.42901 * 109.48490 * 120.02874 * 2 1 3 25 25 H 1.09006 * 109.46690 * 299.97433 * 1 2 3 26 26 H 1.08997 * 109.47695 * 59.97250 * 1 2 3 27 27 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46680 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47810 * 300.02223 * 3 2 1 30 30 H 1.08994 * 109.47388 * 60.03176 * 3 2 1 31 31 H 1.08999 * 109.50365 * 177.72391 * 4 2 1 32 32 H 1.09007 * 109.64222 * 57.47105 * 4 2 1 33 33 H 1.00898 * 111.00385 * 82.37951 * 7 5 4 34 34 H 1.09000 * 109.47425 * 325.85541 * 8 7 5 35 35 H 1.08990 * 109.47152 * 299.99994 * 9 8 7 36 36 H 1.09006 * 109.46799 * 60.00642 * 9 8 7 37 37 H 1.09001 * 109.47282 * 300.00628 * 10 9 8 38 38 H 1.09000 * 109.47168 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47183 * 59.99504 * 11 10 9 40 40 H 0.96996 * 120.00387 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.46764 * 299.99790 * 20 11 10 42 42 H 1.09005 * 109.47008 * 180.02562 * 20 11 10 43 43 H 1.09000 * 109.47342 * 179.97438 * 21 20 11 44 44 H 1.09001 * 109.46992 * 59.99692 * 21 20 11 45 45 H 1.09001 * 109.52165 * 176.92869 * 22 5 4 46 46 H 1.08998 * 109.52207 * 297.11964 * 22 5 4 47 47 H 1.09009 * 109.48330 * 62.37227 * 23 22 5 48 48 H 1.09004 * 109.48141 * 182.40603 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7224 -1.2518 5 6 1.5756 -2.1814 -1.2121 6 1 0.4867 -2.2180 -1.2407 7 7 2.1221 -2.9030 -2.3691 8 6 1.2672 -4.0414 -2.7312 9 6 2.1074 -5.1042 -3.4423 10 6 1.2171 -6.2902 -3.8190 11 6 0.1012 -5.8143 -4.7514 12 6 -0.7753 -6.9824 -5.1229 13 1 -1.8267 -6.9685 -4.8763 14 6 -0.2351 -8.0690 -5.7774 15 7 1.0452 -8.0858 -6.0781 16 14 -1.3217 -9.5167 -6.2386 17 1 -2.7133 -9.2530 -5.7923 18 1 -1.3007 -9.7021 -7.7118 19 1 -0.8150 -10.7463 -5.5777 20 6 -0.7389 -4.7514 -4.0403 21 6 0.1513 -3.5655 -3.6636 22 6 2.0765 -2.8322 0.0810 23 6 1.5646 -2.0284 1.2791 24 8 2.0067 -0.6742 1.1663 25 1 -0.3633 0.5135 0.8903 26 1 -0.3634 0.5142 -0.8897 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1303 1.4422 -0.0005 29 1 1.6767 1.9565 -0.8897 30 1 1.6774 1.9561 0.8902 31 1 3.1298 -0.6876 -1.2733 32 1 1.6421 -0.2373 -2.1430 33 1 3.0692 -3.2035 -2.1935 34 1 0.8291 -4.4683 -1.8291 35 1 2.5454 -4.6773 -4.3444 36 1 2.9021 -5.4436 -2.7779 37 1 0.7793 -6.7169 -2.9166 38 1 1.8157 -7.0475 -4.3252 39 1 0.5390 -5.3875 -5.6537 40 1 1.4252 -8.8500 -6.5389 41 1 -1.1767 -5.1782 -3.1379 42 1 -1.5342 -4.4127 -4.7044 43 1 -0.4473 -2.8082 -3.1574 44 1 0.5891 -3.1388 -4.5660 45 1 1.7036 -3.8547 0.1422 46 1 3.1664 -2.8400 0.0864 47 1 0.4749 -2.0549 1.2959 48 1 1.9531 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:31 Heat of formation + Delta-G solvation = -80.023201 kcal Electronic energy + Delta-G solvation = -23447.204333 eV Core-core repulsion = 20307.326063 eV Total energy + Delta-G solvation = -3139.878271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25328 -38.06236 -35.36276 -33.74182 -32.75250 -30.98735 -29.70202 -28.57205 -27.51669 -27.23745 -24.31333 -23.46320 -22.07414 -21.17537 -20.33560 -19.34427 -18.66026 -16.34875 -16.32416 -16.16766 -15.53846 -14.84938 -14.61958 -14.39985 -14.22478 -13.73376 -13.59913 -13.16057 -13.08555 -12.71846 -12.55826 -12.28594 -12.14914 -11.99719 -11.83728 -11.54743 -11.33940 -11.24545 -11.15694 -11.05826 -10.99944 -10.77160 -10.49580 -10.42297 -10.12973 -10.06321 -9.76942 -9.57099 -9.36051 -8.85410 -8.64172 -8.29116 -8.10282 -5.95429 -4.01348 3.30225 3.38464 3.42344 3.60432 4.21642 4.46111 4.62665 4.68068 4.70769 4.90186 5.05530 5.10670 5.25061 5.33137 5.34292 5.40218 5.47434 5.48673 5.54487 5.58744 5.65344 5.73789 5.82041 5.84360 5.89527 5.96005 6.07422 6.09487 6.18904 6.22808 6.37417 6.43273 6.45485 6.60802 6.70756 6.83082 6.98276 7.15091 7.16484 7.26676 7.40085 7.56185 7.65708 7.78445 8.06298 8.18639 8.50983 9.03305 9.63200 11.10096 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038437 B = 0.003334 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.293445 B = 8396.903188 C = 8496.943488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 C -0.136 4.136 4 C -0.127 4.127 5 C 0.086 3.914 6 H 0.079 0.921 7 N -0.682 5.682 8 C 0.092 3.908 9 C -0.117 4.117 10 C -0.106 4.106 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.109 4.109 21 C -0.099 4.099 22 C -0.186 4.186 23 C 0.064 3.936 24 O -0.376 6.376 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.337 0.663 34 H 0.036 0.964 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.030 0.970 38 H 0.092 0.908 39 H 0.025 0.975 40 H 0.258 0.742 41 H 0.043 0.957 42 H 0.047 0.953 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 14.996 12.750 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.193 4.193 4 C -0.165 4.165 5 C -0.024 4.024 6 H 0.097 0.903 7 N -0.312 5.312 8 C -0.017 4.017 9 C -0.155 4.155 10 C -0.145 4.145 11 C 0.030 3.970 12 C -0.550 4.550 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.147 4.147 21 C -0.138 4.138 22 C -0.225 4.225 23 C -0.014 4.014 24 O -0.296 6.296 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.111 0.889 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.393 15.391 12.311 19.854 hybrid contribution -0.483 -1.760 0.295 1.849 sum 1.910 13.631 12.606 18.665 Atomic orbital electron populations 1.22461 0.95839 1.02766 1.02664 1.21563 0.93080 0.92799 0.85523 1.21739 1.01883 0.93371 1.02331 1.22199 1.01717 0.95141 0.97478 1.21660 0.99493 0.93366 0.87901 0.90286 1.60650 1.05654 1.28167 1.36715 1.21594 0.93972 0.89206 0.96882 1.21805 0.97657 0.96761 0.99289 1.21581 0.98145 0.96156 0.98575 1.18647 0.92429 0.92339 0.93535 1.21290 0.95110 1.02052 1.36506 0.92831 1.24970 0.94949 0.98335 0.95817 1.69883 1.11287 1.30502 1.41314 0.86608 0.80914 0.82767 0.78126 1.19868 1.21091 1.21137 1.21637 0.97840 0.95687 0.99553 1.21520 0.95855 0.97644 0.98742 1.22959 1.02138 1.00413 0.96990 1.22492 0.98723 0.82122 0.98043 1.87937 1.73801 1.24524 1.43313 0.92044 0.91309 0.91865 0.91883 0.91057 0.92024 0.91226 0.90339 0.84456 0.94611 0.92057 0.94323 0.95087 0.88947 0.95639 0.93185 0.93817 0.93455 0.94217 0.92076 0.90939 0.91027 0.92930 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 7.93 37.16 0.29 -1.40 16 2 C 0.11 1.12 1.11 -90.47 -0.10 1.02 16 3 C -0.14 -1.17 8.85 37.15 0.33 -0.84 16 4 C -0.13 -1.41 4.55 -26.49 -0.12 -1.53 16 5 C 0.09 1.05 2.04 -67.53 -0.14 0.92 16 6 H 0.08 1.04 5.66 -51.93 -0.29 0.75 16 7 N -0.68 -9.67 6.07 -99.54 -0.60 -10.27 16 8 C 0.09 1.54 2.30 -67.71 -0.16 1.39 16 9 C -0.12 -2.22 5.19 -26.73 -0.14 -2.36 16 10 C -0.11 -2.46 4.98 -26.73 -0.13 -2.59 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 12 C -0.51 -14.06 8.56 -34.45 -0.29 -14.35 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.40 11.32 55.43 0.63 -24.78 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 C -0.11 -2.28 5.14 -26.73 -0.14 -2.42 16 21 C -0.10 -1.78 5.42 -26.73 -0.14 -1.93 16 22 C -0.19 -2.08 5.39 -26.59 -0.14 -2.23 16 23 C 0.06 0.66 6.52 37.20 0.24 0.90 16 24 O -0.38 -4.39 10.24 -35.23 -0.36 -4.75 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.63 4.97 -51.93 -0.26 0.37 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.34 4.56 8.02 -39.29 -0.32 4.24 16 34 H 0.04 0.62 7.27 -51.93 -0.38 0.24 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.04 0.65 7.52 -51.93 -0.39 0.26 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.85 7.61 -51.93 -0.40 0.45 16 46 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 47 H 0.05 0.52 6.34 -51.92 -0.33 0.19 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -28.05 353.58 -9.94 -37.98 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.98 Total: 3.02 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: -0.93 Total: -22.84 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.02 Total: -35.05 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.36 Total: -4.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.05 -9.94 -37.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.039 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds