Wall clock time and date at job start Tue Mar 31 2020 05:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.54721 * 2 1 4 4 N 1.46896 * 109.47168 * 59.99945 * 3 2 1 5 5 C 1.46906 * 111.00042 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47255 * 204.99965 * 5 4 3 7 7 C 1.53000 * 109.47233 * 300.00730 * 6 5 4 8 8 C 1.52997 * 109.47060 * 299.99657 * 7 6 5 9 9 C 1.50697 * 109.47466 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99563 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00432 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46756 * 59.99920 * 13 11 9 15 15 H 1.48490 * 109.47381 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47117 * 300.00527 * 13 11 9 17 17 C 1.52999 * 109.47317 * 59.99960 * 8 7 6 18 18 C 1.52997 * 109.46770 * 85.00472 * 5 4 3 19 19 C 1.53178 * 109.54175 * 120.18036 * 2 1 3 20 20 C 1.53110 * 109.15965 * 63.06247 * 19 2 1 21 21 O 1.42901 * 109.48646 * 57.47181 * 20 19 2 22 22 C 1.42911 * 114.09885 * 298.88848 * 21 20 19 23 23 C 1.53091 * 109.41007 * 61.16212 * 22 21 20 24 24 H 1.08999 * 109.46939 * 59.99823 * 1 2 3 25 25 H 1.08998 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46800 * 300.00119 * 1 2 3 27 27 H 1.09007 * 109.47353 * 300.00210 * 3 2 1 28 28 H 1.09006 * 109.47390 * 179.97438 * 3 2 1 29 29 H 1.00892 * 111.00352 * 303.95531 * 4 3 2 30 30 H 1.08993 * 109.47034 * 325.00653 * 5 4 3 31 31 H 1.08992 * 109.47063 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.46733 * 60.00072 * 6 5 4 33 33 H 1.09002 * 109.47398 * 59.99826 * 7 6 5 34 34 H 1.09001 * 109.47194 * 180.02562 * 7 6 5 35 35 H 1.09002 * 109.47153 * 300.00319 * 8 7 6 36 36 H 0.97002 * 119.99731 * 180.02562 * 12 11 9 37 37 H 1.09000 * 109.47486 * 180.02562 * 17 8 7 38 38 H 1.09002 * 109.46716 * 60.00091 * 17 8 7 39 39 H 1.09002 * 109.47153 * 179.97438 * 18 5 4 40 40 H 1.09001 * 109.47289 * 300.00076 * 18 5 4 41 41 H 1.09003 * 109.52386 * 182.87392 * 19 2 1 42 42 H 1.08997 * 109.52242 * 303.06507 * 19 2 1 43 43 H 1.09005 * 109.40170 * 297.49585 * 20 19 2 44 44 H 1.08991 * 109.49007 * 177.50796 * 20 19 2 45 45 H 1.08993 * 109.47913 * 301.17686 * 22 21 20 46 46 H 1.08995 * 109.48763 * 181.14393 * 22 21 20 47 47 H 1.09007 * 109.51785 * 182.48442 * 23 22 21 48 48 H 1.09000 * 109.57648 * 62.32840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0419 1.4417 0.0000 4 7 1.5531 2.1349 1.1994 5 6 2.0265 3.5252 1.2336 6 6 2.0606 4.0168 2.6821 7 6 0.6540 3.9420 3.2794 8 6 -0.2939 4.8236 2.4638 9 6 -1.6792 4.7505 3.0524 10 1 -1.8650 4.1370 3.9215 11 6 -2.7094 5.4678 2.4820 12 7 -2.4830 6.2154 1.4239 13 14 -4.4268 5.3766 3.2111 14 1 -4.3934 5.8531 4.6172 15 1 -5.3464 6.2333 2.4204 16 1 -4.9055 3.9713 3.1760 17 6 -0.3280 4.3321 1.0153 18 6 1.0787 4.4068 0.4181 19 6 2.0424 -0.7257 1.2479 20 6 1.5930 -2.1885 1.1985 21 8 2.0770 -2.7957 -0.0012 22 6 1.5911 -2.1878 -1.1999 23 6 2.0424 -0.7257 -1.2479 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6792 1.9561 -0.8900 28 1 3.1319 1.4404 0.0005 29 1 0.5466 2.0938 1.2559 30 1 3.0286 3.5783 0.8081 31 1 2.4114 5.0484 2.7074 32 1 2.7359 3.3886 3.2632 33 1 0.3028 2.9104 3.2540 34 1 0.6782 4.2927 4.3111 35 1 0.0573 5.8552 2.4892 36 1 -3.2077 6.7203 1.0228 37 1 -1.0030 4.9605 0.4342 38 1 -0.6792 3.3005 0.9900 39 1 1.4296 5.4384 0.4438 40 1 1.0543 4.0566 -0.6138 41 1 3.1312 -0.6812 1.2738 42 1 1.6360 -0.2483 2.1395 43 1 0.5040 -2.2336 1.2149 44 1 1.9920 -2.7209 2.0618 45 1 0.5022 -2.2329 -1.2147 46 1 1.9888 -2.7195 -2.0642 47 1 1.6359 -0.2483 -2.1396 48 1 3.1311 -0.6802 -1.2745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:59 Heat of formation + Delta-G solvation = -78.236945 kcal Electronic energy + Delta-G solvation = -23898.260248 eV Core-core repulsion = 20758.459435 eV Total energy + Delta-G solvation = -3139.800813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07211 -38.39741 -35.85336 -33.50161 -31.72308 -31.13095 -29.62184 -28.89945 -27.62038 -25.84041 -24.49268 -23.56803 -22.20874 -21.44226 -20.67702 -18.55474 -18.00398 -16.43823 -16.30088 -16.04179 -15.37313 -14.94310 -14.86719 -14.51160 -14.40569 -13.77645 -13.57690 -13.38575 -12.97755 -12.52150 -12.36936 -12.19086 -12.05407 -11.87772 -11.54801 -11.44910 -11.27855 -11.26022 -11.13348 -10.91483 -10.68167 -10.62993 -10.36009 -10.19064 -10.13011 -10.00518 -9.87870 -9.42472 -9.26747 -8.87750 -8.62924 -8.26869 -7.84891 -5.96135 -4.02179 3.31901 3.36773 3.39563 3.83571 4.42476 4.45641 4.67975 4.79243 4.89823 5.03569 5.18559 5.26683 5.28925 5.32919 5.50631 5.55577 5.58600 5.61619 5.67958 5.72290 5.81509 5.84146 5.88304 5.90219 6.07257 6.09859 6.17018 6.20917 6.28151 6.39104 6.44595 6.47417 6.52376 6.63864 6.70801 6.83581 7.00835 7.14987 7.20946 7.23788 7.53334 7.55400 7.76988 7.89699 8.05743 8.17947 8.50652 9.02502 9.62510 11.09094 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.004394 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.155353 B = 6371.309449 C = 6892.222515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.058 4.058 3 C 0.071 3.929 4 N -0.682 5.682 5 C 0.093 3.907 6 C -0.103 4.103 7 C -0.106 4.106 8 C 0.049 3.951 9 C -0.511 4.511 10 H 0.053 0.947 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.887 3.113 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.106 4.106 18 C -0.148 4.148 19 C -0.132 4.132 20 C 0.056 3.944 21 O -0.387 6.387 22 C 0.061 3.939 23 C -0.145 4.145 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.351 0.649 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -12.798 -4.908 16.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.059 4.059 3 C -0.059 4.059 4 N -0.317 5.317 5 C -0.017 4.017 6 C -0.141 4.141 7 C -0.144 4.144 8 C 0.031 3.969 9 C -0.549 4.549 10 H 0.071 0.929 11 C -0.140 4.140 12 N -0.531 5.531 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.144 4.144 18 C -0.187 4.187 19 C -0.170 4.170 20 C -0.021 4.021 21 O -0.306 6.306 22 C -0.016 4.016 23 C -0.183 4.183 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.174 0.826 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.089 0.911 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.486 -13.061 -4.622 16.791 hybrid contribution -1.743 0.791 -0.467 1.970 sum 7.743 -12.270 -5.089 15.375 Atomic orbital electron populations 1.22027 0.94545 1.01671 1.02683 1.20568 0.95641 0.94901 0.94764 1.21933 0.99376 0.92480 0.92131 1.60755 1.18050 1.14762 1.38155 1.21469 0.96723 0.87088 0.96423 1.21512 0.98695 0.99132 0.94756 1.21564 0.93719 1.00515 0.98570 1.18641 0.93263 0.94252 0.90794 1.21227 0.93777 1.27159 1.12783 0.92882 1.24963 0.98697 0.95294 0.95016 1.69871 1.32145 1.29624 1.21464 0.86734 0.84571 0.77907 0.79223 1.20351 1.21420 1.20377 1.21575 0.93097 0.99500 1.00205 1.22257 0.99212 0.99666 0.97596 1.22095 1.01437 0.94571 0.98907 1.22702 0.98398 0.93858 0.87126 1.87892 1.71957 1.56838 1.13940 1.22557 0.98370 0.92994 0.87630 1.22220 1.01706 0.96121 0.98261 0.92654 0.92639 0.91431 0.95542 0.91736 0.82584 0.92441 0.92900 0.93135 0.92917 0.93972 0.95972 0.93132 0.89178 0.95165 0.92492 0.94407 0.91547 0.89366 0.93114 0.89257 0.93060 0.89373 0.91095 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 7.60 37.16 0.28 -1.56 16 2 C -0.06 -0.68 0.60 -154.33 -0.09 -0.77 16 3 C 0.07 0.93 4.46 -3.83 -0.02 0.91 16 4 N -0.68 -10.46 5.06 -106.73 -0.54 -11.00 16 5 C 0.09 1.54 2.86 -67.71 -0.19 1.34 16 6 C -0.10 -1.81 5.64 -26.73 -0.15 -1.96 16 7 C -0.11 -2.18 4.90 -26.73 -0.13 -2.31 16 8 C 0.05 1.19 2.10 -91.78 -0.19 0.99 16 9 C -0.51 -13.84 8.56 -34.44 -0.29 -14.14 16 10 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 11 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 13 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.11 -2.38 4.73 -26.73 -0.13 -2.51 16 18 C -0.15 -2.78 5.52 -26.73 -0.15 -2.93 16 19 C -0.13 -1.54 4.72 -26.58 -0.13 -1.66 16 20 C 0.06 0.61 6.57 37.21 0.24 0.85 16 21 O -0.39 -4.66 10.77 -35.23 -0.38 -5.04 16 22 C 0.06 0.61 6.57 37.20 0.24 0.86 16 23 C -0.14 -1.49 4.92 -26.59 -0.13 -1.62 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.61 5.02 -51.93 -0.26 0.35 16 26 H 0.07 0.92 6.58 -51.93 -0.34 0.58 16 27 H 0.03 0.37 7.44 -51.93 -0.39 -0.02 16 28 H 0.06 0.83 8.05 -51.93 -0.42 0.42 16 29 H 0.35 5.94 3.61 -39.30 -0.14 5.80 16 30 H 0.06 0.89 7.80 -51.93 -0.40 0.48 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 1.08 7.21 -51.93 -0.37 0.71 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 37 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 38 H 0.03 0.67 6.26 -51.93 -0.32 0.34 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.12 7.72 -51.93 -0.40 0.72 16 43 H 0.05 0.54 6.61 -51.93 -0.34 0.19 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.49 6.60 -51.93 -0.34 0.15 16 46 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -27.41 345.07 -9.67 -37.08 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.63 Total: 5.11 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -0.93 Total: -22.91 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.09 Total: -35.60 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.38 Total: -5.04 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.41 -9.67 -37.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.153 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds