Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 114.00360 * 2 1 4 4 C 1.53002 * 109.52067 * 300.12537 * 3 2 1 5 5 C 1.53114 * 109.52409 * 179.97438 * 3 2 1 6 6 C 1.53040 * 109.28057 * 297.68532 * 5 3 2 7 7 N 1.46845 * 109.52324 * 300.82171 * 6 5 3 8 8 C 1.46901 * 110.99925 * 185.83500 * 7 6 5 9 9 C 1.53000 * 109.46769 * 60.00308 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46963 * 299.99499 * 10 9 8 12 12 C 1.50703 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 240.00190 * 12 11 10 14 14 C 1.37880 * 119.99788 * 60.00122 * 12 11 10 15 15 N 1.31510 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99568 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47545 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46892 * 120.00078 * 16 14 12 19 19 H 1.48496 * 109.47356 * 239.99680 * 16 14 12 20 20 C 1.52997 * 109.47092 * 60.00194 * 11 10 9 21 21 C 1.53002 * 109.46860 * 180.02562 * 8 7 6 22 22 C 1.46847 * 111.19701 * 61.74345 * 7 6 5 23 23 C 1.53044 * 109.52218 * 298.25151 * 22 7 6 24 24 H 1.09004 * 109.46619 * 59.99956 * 1 2 3 25 25 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46766 * 300.00286 * 1 2 3 27 27 H 1.08992 * 109.47343 * 299.87178 * 4 3 2 28 28 H 1.09005 * 109.47047 * 59.87270 * 4 3 2 29 29 H 1.08998 * 109.46597 * 179.87026 * 4 3 2 30 30 H 1.09000 * 109.50549 * 177.74850 * 5 3 2 31 31 H 1.08999 * 109.53350 * 57.64720 * 5 3 2 32 32 H 1.08996 * 109.46427 * 180.80519 * 6 5 3 33 33 H 1.09009 * 109.45077 * 60.82854 * 6 5 3 34 34 H 1.09002 * 109.47401 * 300.00015 * 8 7 6 35 35 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 37 37 H 1.09000 * 109.47437 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 39 39 H 1.09002 * 109.47067 * 300.00341 * 11 10 9 40 40 H 0.96996 * 119.99480 * 180.02562 * 15 14 12 41 41 H 1.09001 * 109.47375 * 180.02562 * 20 11 10 42 42 H 1.09002 * 109.47497 * 59.99850 * 20 11 10 43 43 H 1.09002 * 109.47075 * 299.99593 * 21 8 7 44 44 H 1.08996 * 109.47407 * 60.00550 * 21 8 7 45 45 H 1.08997 * 109.46536 * 58.27058 * 22 7 6 46 46 H 1.09008 * 109.46050 * 178.24578 * 22 7 6 47 47 H 1.08998 * 109.50494 * 299.24779 * 23 22 7 48 48 H 1.09005 * 109.53510 * 179.13830 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.5572 2.0669 -1.2473 5 6 3.5368 1.1858 0.0006 6 6 3.9877 0.4775 1.2801 7 7 3.5383 1.2435 2.4496 8 6 4.0708 0.6683 3.6920 9 6 5.6000 0.6899 3.6495 10 6 6.1546 0.0902 4.9432 11 6 5.6660 0.9129 6.1371 12 6 6.2127 0.3227 7.4114 13 1 5.5370 -0.0325 8.1754 14 6 7.5755 0.2362 7.6019 15 7 8.3983 0.6692 6.6718 16 14 8.2531 -0.4947 9.1818 17 1 7.1281 -0.9039 10.0604 18 1 9.0865 -1.6812 8.8606 19 1 9.0837 0.5191 9.8799 20 6 4.1368 0.8915 6.1796 21 6 3.5816 1.4912 4.8855 22 6 2.0732 1.3312 2.4959 23 6 1.5652 2.0652 1.2527 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8790 1.5284 -2.1386 28 1 0.4704 2.1515 -1.2465 29 1 1.9992 3.0632 -1.2452 30 1 3.9799 2.1809 -0.0397 31 1 3.8576 0.6092 -0.8669 32 1 5.0751 0.4035 1.2904 33 1 3.5552 -0.5226 1.3131 34 1 3.7245 -0.3602 3.7939 35 1 5.9482 0.1034 2.7992 36 1 5.9463 1.7183 3.5476 37 1 7.2441 0.1059 4.9133 38 1 5.8083 -0.9384 5.0447 39 1 6.0123 1.9415 6.0357 40 1 9.3570 0.6080 6.8057 41 1 3.7886 1.4780 7.0299 42 1 3.7904 -0.1370 6.2810 43 1 3.9275 2.5199 4.7839 44 1 2.4921 1.4755 4.9156 45 1 1.6499 0.3272 2.5232 46 1 1.7702 1.8775 3.3892 47 1 1.9773 3.0741 1.2320 48 1 0.4767 2.1170 1.2793 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = -63.230717 kcal Electronic energy + Delta-G solvation = -23737.688859 eV Core-core repulsion = 20598.538765 eV Total energy + Delta-G solvation = -3139.150094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15001 -38.15578 -35.84441 -33.31555 -32.00852 -31.21895 -29.59189 -29.21885 -27.34333 -26.68456 -24.23036 -23.43448 -22.07571 -20.95382 -20.15271 -19.53840 -18.63789 -16.50148 -16.28021 -15.73710 -15.51072 -15.28514 -14.58547 -14.49534 -14.01533 -13.72958 -13.48165 -13.15622 -13.00080 -12.66202 -12.57316 -12.39061 -12.15395 -12.02979 -11.95504 -11.43879 -11.28712 -11.11899 -11.03955 -11.00916 -10.82396 -10.50023 -10.37889 -10.22027 -10.11531 -10.02369 -9.70126 -9.54253 -9.26854 -8.77207 -8.54952 -8.23367 -7.92105 -5.91560 -3.97313 3.32994 3.41093 3.45070 3.65220 4.19671 4.49346 4.58193 4.66925 4.79304 5.11570 5.17826 5.22891 5.30235 5.37535 5.39822 5.47152 5.50079 5.52646 5.57419 5.61887 5.67342 5.72358 5.92321 5.96528 5.99348 6.02167 6.06785 6.16459 6.24495 6.29748 6.42702 6.50889 6.53680 6.65364 6.78847 6.84959 7.04938 7.14245 7.21728 7.33925 7.47843 7.53134 7.64598 7.82897 8.11096 8.24180 8.55214 9.07239 9.66921 11.13940 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.041492 B = 0.003532 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.671589 B = 7925.136228 C = 8167.593928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.098 4.098 6 C 0.054 3.946 7 N -0.534 5.534 8 C 0.092 3.908 9 C -0.107 4.107 10 C -0.108 4.108 11 C 0.049 3.951 12 C -0.511 4.511 13 H 0.053 0.947 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.107 4.107 21 C -0.108 4.108 22 C 0.056 3.944 23 C -0.139 4.139 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.026 0.974 40 H 0.258 0.742 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.032 0.968 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 1.997 -15.012 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.295 6.295 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.136 4.136 6 C -0.074 4.074 7 N -0.259 5.259 8 C -0.015 4.015 9 C -0.145 4.145 10 C -0.146 4.146 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.071 0.929 14 C -0.141 4.141 15 N -0.529 5.529 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.072 4.072 23 C -0.177 4.177 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.589 2.322 -15.092 20.441 hybrid contribution -0.187 -1.029 0.869 1.360 sum -13.776 1.293 -14.223 19.843 Atomic orbital electron populations 1.22748 0.82059 1.02335 0.99966 1.87979 1.19052 1.27571 1.94919 1.21593 0.94381 0.83077 0.93741 1.22392 1.01536 1.01086 0.98315 1.21596 0.91858 1.02104 0.98047 1.22043 1.00734 0.95022 0.89556 1.62039 1.08370 1.52665 1.02831 1.21667 0.96438 0.95482 0.87922 1.21706 0.92383 1.01246 0.99166 1.21606 1.03381 0.97318 0.92321 1.18653 0.88551 0.96179 0.93579 1.21293 0.91421 1.40025 1.02204 0.92864 1.24965 0.97201 0.95549 0.96336 1.69889 1.02622 1.47332 1.33082 0.86612 0.78984 0.78862 0.83979 1.19899 1.21143 1.21132 1.21629 0.99658 0.98895 0.94358 1.21671 0.98154 0.99863 0.94881 1.22015 0.88677 0.98951 0.97593 1.22184 1.00196 1.00491 0.94837 0.94077 0.90063 0.93858 0.91903 0.92416 0.91351 0.89859 0.91160 0.90122 0.94518 0.95027 0.93985 0.92124 0.88948 0.95128 0.95627 0.93213 0.93436 0.93712 0.91860 0.93780 0.94953 0.90367 0.90170 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.22 101.05 1.03 1.26 16 2 O -0.38 -4.57 9.21 -35.23 -0.32 -4.89 16 3 C 0.11 1.22 0.72 -90.49 -0.06 1.15 16 4 C -0.18 -1.53 8.26 37.16 0.31 -1.22 16 5 C -0.10 -1.16 5.11 -26.65 -0.14 -1.29 16 6 C 0.05 0.78 5.08 -3.83 -0.02 0.76 16 7 N -0.53 -8.23 4.53 -226.68 -1.03 -9.26 16 8 C 0.09 1.65 1.95 -67.71 -0.13 1.51 16 9 C -0.11 -2.12 4.98 -26.73 -0.13 -2.26 16 10 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 11 C 0.05 1.22 2.10 -91.77 -0.19 1.03 16 12 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 15 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 16 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.11 -2.27 5.14 -26.70 -0.14 -2.41 16 21 C -0.11 -1.96 4.85 -26.70 -0.13 -2.09 16 22 C 0.06 0.76 5.00 -3.83 -0.02 0.74 16 23 C -0.14 -1.54 4.59 -26.64 -0.12 -1.67 16 24 H 0.04 0.32 6.42 -51.93 -0.33 -0.02 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.38 6.38 -51.93 -0.33 0.05 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.19 6.01 -51.93 -0.31 0.87 16 33 H 0.04 0.57 7.76 -51.92 -0.40 0.16 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.04 0.77 6.28 -51.93 -0.33 0.45 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.04 0.71 6.22 -51.93 -0.32 0.39 16 45 H 0.03 0.47 7.76 -51.93 -0.40 0.07 16 46 H 0.08 1.06 5.90 -51.92 -0.31 0.76 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -28.73 346.43 -9.56 -38.28 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -8.76 Total: -0.78 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -0.27 Total: -20.08 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: -0.40 Total: -34.23 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.32 Total: -4.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.73 -9.56 -38.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.949 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds