Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46895 * 109.47477 * 2 1 4 4 C 1.46899 * 111.00234 * 304.11452 * 3 2 1 5 5 C 1.53000 * 109.47217 * 228.12168 * 4 3 2 6 6 C 1.53002 * 109.47035 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47077 * 59.99906 * 6 5 4 8 8 C 1.50704 * 109.47197 * 59.99979 * 7 6 5 9 9 H 1.07998 * 119.99457 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99919 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99985 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99845 * 180.27525 * 10 8 7 13 13 H 1.48501 * 109.47239 * 179.72754 * 12 10 8 14 14 H 1.48499 * 109.47489 * 299.72782 * 12 10 8 15 15 H 1.48510 * 109.47192 * 59.72793 * 12 10 8 16 16 C 1.53000 * 109.47265 * 299.99953 * 7 6 5 17 17 C 1.53000 * 109.46967 * 108.12030 * 4 3 2 18 18 C 1.53003 * 109.47061 * 240.00136 * 2 1 3 19 19 C 1.52999 * 109.47252 * 300.00357 * 18 2 1 20 20 C 1.53004 * 109.46948 * 299.99720 * 19 18 2 21 21 H 1.08993 * 109.47218 * 299.99873 * 20 19 18 22 22 O 1.42899 * 109.47308 * 179.97438 * 20 19 18 23 23 C 1.53003 * 109.46916 * 60.00074 * 20 19 18 24 24 C 1.52999 * 109.47252 * 299.99740 * 23 20 19 25 25 H 1.09000 * 109.47025 * 64.40047 * 1 2 3 26 26 H 1.08999 * 109.47391 * 184.40618 * 1 2 3 27 27 H 1.09003 * 109.46793 * 304.40428 * 1 2 3 28 28 H 1.00908 * 110.99766 * 68.06883 * 3 2 1 29 29 H 1.09000 * 109.46826 * 348.12585 * 4 3 2 30 30 H 1.08995 * 109.46976 * 59.99841 * 5 4 3 31 31 H 1.09004 * 109.46856 * 300.00050 * 5 4 3 32 32 H 1.09006 * 109.46829 * 299.99907 * 6 5 4 33 33 H 1.08998 * 109.47218 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47046 * 180.02562 * 7 6 5 35 35 H 0.97006 * 119.99752 * 179.97438 * 11 10 8 36 36 H 1.08995 * 109.46976 * 180.02562 * 16 7 6 37 37 H 1.09006 * 109.47236 * 300.00364 * 16 7 6 38 38 H 1.08998 * 109.47205 * 300.00296 * 17 4 3 39 39 H 1.09006 * 109.47290 * 60.00439 * 17 4 3 40 40 H 1.09002 * 109.46861 * 60.00009 * 18 2 1 41 41 H 1.08993 * 109.47341 * 180.02562 * 18 2 1 42 42 H 1.09000 * 109.47739 * 179.97438 * 19 18 2 43 43 H 1.09008 * 109.47289 * 59.99227 * 19 18 2 44 44 H 0.96703 * 113.99511 * 59.99552 * 22 20 19 45 45 H 1.09002 * 109.46861 * 180.02562 * 23 20 19 46 46 H 1.08993 * 109.47341 * 59.99875 * 23 20 19 47 47 H 1.08998 * 109.46764 * 300.00692 * 24 23 20 48 48 H 1.09001 * 109.47269 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4701 2.1377 -1.1354 5 6 2.5998 2.8856 -1.8462 6 6 2.0272 3.6702 -3.0284 7 6 0.9913 4.6748 -2.5200 8 6 1.6476 5.6283 -1.5550 9 1 2.6983 5.5274 -1.3268 10 6 0.9065 6.6292 -0.9634 11 7 -0.3731 6.7516 -1.2409 12 14 1.7218 7.8158 0.2269 13 1 0.7176 8.7945 0.7158 14 1 2.2768 7.0592 1.3779 15 1 2.8191 8.5371 -0.4668 16 6 -0.1384 3.9269 -1.8092 17 6 0.4338 3.1423 -0.6275 18 6 2.0400 -0.7212 -1.2493 19 6 1.5299 -2.1637 -1.2494 20 6 2.0399 -2.8851 -0.0002 21 1 3.1299 -2.8851 -0.0002 22 8 1.5631 -4.2321 0.0001 23 6 1.5299 -2.1638 1.2491 24 6 2.0400 -0.7213 1.2492 25 1 -0.3633 0.4440 -0.9268 26 1 -0.3634 -1.0246 0.0790 27 1 -0.3633 0.5807 0.8479 28 1 1.8085 1.8431 0.8739 29 1 0.9956 1.4477 -1.8332 30 1 3.3380 2.1699 -2.2080 31 1 3.0742 3.5756 -1.1483 32 1 1.5525 2.9805 -3.7264 33 1 2.8320 4.2027 -3.5351 34 1 0.5830 5.2334 -3.3623 35 1 -0.8945 7.4556 -0.8244 36 1 -0.8766 4.6426 -1.4474 37 1 -0.6132 3.2372 -2.5072 38 1 -0.3710 2.6094 -0.1211 39 1 0.9083 3.8323 0.0703 40 1 1.6766 -0.2073 -2.1392 41 1 3.1299 -0.7217 -1.2491 42 1 1.8928 -2.6775 -2.1396 43 1 0.4398 -2.1637 -1.2493 44 1 1.8480 -4.7503 -0.7650 45 1 1.8937 -2.6775 2.1391 46 1 0.4400 -2.1638 1.2491 47 1 3.1300 -0.7215 1.2491 48 1 1.6770 -0.2077 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = -82.702573 kcal Electronic energy + Delta-G solvation = -24030.468631 eV Core-core repulsion = 20890.474175 eV Total energy + Delta-G solvation = -3139.994457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.08435 -37.94793 -36.34552 -33.62698 -31.92269 -30.99801 -29.58977 -29.42901 -27.35290 -26.15539 -24.52697 -23.06942 -21.61994 -21.34169 -20.25814 -18.71178 -18.45680 -17.39918 -16.27488 -15.50733 -15.10549 -14.73236 -14.60185 -14.52203 -14.06510 -13.71255 -13.32154 -13.12428 -12.82846 -12.61099 -12.39546 -12.29264 -11.90232 -11.67211 -11.49245 -11.40166 -11.22678 -11.04160 -10.97859 -10.84247 -10.79647 -10.62310 -10.53508 -10.34043 -10.10908 -9.98636 -9.77531 -9.50663 -9.08578 -8.88938 -8.64214 -8.25688 -7.81226 -5.92351 -3.96246 3.33915 3.38911 3.41891 3.96254 4.43556 4.48275 4.61383 4.63410 5.02425 5.08085 5.16419 5.23059 5.30786 5.38002 5.41450 5.61261 5.64605 5.66881 5.77969 5.84926 5.87698 5.93718 5.99778 6.07893 6.11935 6.14256 6.20759 6.34898 6.37753 6.48109 6.52614 6.60556 6.62284 6.81583 6.85837 6.92831 7.20142 7.26000 7.39658 7.45102 7.55582 7.70796 7.79143 7.88506 7.99346 8.20688 8.54583 9.06310 9.66643 11.13432 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.004120 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.075142 B = 6794.186732 C = 7029.264541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.114 3.886 3 N -0.680 5.680 4 C 0.093 3.907 5 C -0.089 4.089 6 C -0.108 4.108 7 C 0.044 3.956 8 C -0.498 4.498 9 H 0.055 0.945 10 C 0.060 3.940 11 N -0.893 5.893 12 Si 0.884 3.116 13 H -0.290 1.290 14 H -0.278 1.278 15 H -0.279 1.279 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.101 4.101 19 C -0.151 4.151 20 C 0.105 3.895 21 H 0.054 0.946 22 O -0.572 6.572 23 C -0.111 4.111 24 C -0.104 4.104 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.340 0.660 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.045 0.955 34 H 0.021 0.979 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.010 0.990 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.375 0.625 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -17.586 2.082 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.023 3.977 3 N -0.309 5.309 4 C -0.016 4.016 5 C -0.127 4.127 6 C -0.146 4.146 7 C 0.026 3.974 8 C -0.536 4.536 9 H 0.073 0.927 10 C -0.140 4.140 11 N -0.532 5.532 12 Si 0.712 3.288 13 H -0.215 1.215 14 H -0.204 1.204 15 H -0.204 1.204 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.139 4.139 19 C -0.190 4.190 20 C 0.046 3.954 21 H 0.072 0.928 22 O -0.377 6.377 23 C -0.149 4.149 24 C -0.142 4.142 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.158 0.842 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.029 0.971 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.222 0.778 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.376 -17.411 2.374 17.893 hybrid contribution -0.356 0.758 0.418 0.935 sum 3.020 -16.653 2.792 17.153 Atomic orbital electron populations 1.22732 0.97274 1.01784 1.02396 1.20873 0.92140 0.89887 0.94819 1.60756 1.62367 1.01068 1.06712 1.21606 0.94659 0.93712 0.91594 1.21358 0.96325 0.97505 0.97537 1.21577 0.99287 0.97682 0.96085 1.18674 0.91477 0.91985 0.95277 1.21130 0.95444 1.12198 1.24844 0.92697 1.24934 0.94822 0.97401 0.96856 1.69864 1.06347 1.33028 1.44006 0.86790 0.79129 0.81166 0.81688 1.21531 1.20377 1.20436 1.21445 1.00473 0.97117 0.95195 1.21970 0.96521 0.97367 1.00007 1.21515 1.01183 0.93481 0.97755 1.22310 1.02178 0.96758 0.97723 1.21859 0.96919 0.81218 0.95371 0.92785 1.86502 1.78004 1.23852 1.49386 1.21509 1.01863 0.94897 0.96656 1.21506 1.01428 0.93813 0.97458 0.92030 0.92251 0.92721 0.84191 0.92454 0.94470 0.91221 0.95224 0.93644 0.96042 0.93210 0.89267 0.97116 0.95174 0.90859 0.91320 0.91265 0.91954 0.90974 0.77801 0.91483 0.90977 0.91016 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 6.63 37.16 0.25 -2.10 16 2 C 0.11 1.43 0.70 -131.60 -0.09 1.34 16 3 N -0.68 -10.19 6.00 -93.05 -0.56 -10.75 16 4 C 0.09 1.62 1.51 -67.71 -0.10 1.52 16 5 C -0.09 -1.70 5.30 -26.73 -0.14 -1.84 16 6 C -0.11 -2.24 5.41 -26.73 -0.14 -2.39 16 7 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 8 C -0.50 -13.15 6.61 -34.44 -0.23 -13.38 16 9 H 0.05 1.45 6.71 -52.49 -0.35 1.10 16 10 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 11 N -0.89 -25.17 11.32 55.43 0.63 -24.55 16 12 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.10 -2.39 5.23 -26.76 -0.14 -2.53 16 17 C -0.12 -2.42 4.67 -26.76 -0.13 -2.54 16 18 C -0.10 -1.21 4.67 -26.73 -0.12 -1.33 16 19 C -0.15 -1.51 5.27 -26.73 -0.14 -1.65 16 20 C 0.10 1.03 3.47 -26.73 -0.09 0.94 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 O -0.57 -5.66 13.32 -35.23 -0.47 -6.13 16 23 C -0.11 -1.15 5.30 -26.73 -0.14 -1.29 16 24 C -0.10 -1.14 4.95 -26.73 -0.13 -1.27 16 25 H 0.06 0.88 6.39 -51.93 -0.33 0.54 16 26 H 0.06 0.69 4.82 -51.93 -0.25 0.44 16 27 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 28 H 0.34 5.16 8.12 -39.29 -0.32 4.84 16 29 H 0.06 0.99 4.80 -51.93 -0.25 0.75 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.03 0.56 6.81 -51.93 -0.35 0.21 16 39 H 0.07 1.66 7.22 -51.93 -0.37 1.28 16 40 H 0.07 0.91 6.41 -51.93 -0.33 0.58 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.77 6.53 -51.92 -0.34 0.43 16 44 H 0.38 2.16 9.08 45.56 0.41 2.58 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.79 6.33 -51.93 -0.33 0.46 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -27.91 340.70 -9.64 -37.56 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.67 Total: 6.79 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -1.69 Total: -24.16 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.07 Total: -35.30 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.47 Total: -6.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.91 -9.64 -37.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.145 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds