Wall clock time and date at job start Tue Mar 31 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99443 * 2 1 4 4 H 1.48500 * 109.46887 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47167 * 299.99793 * 3 2 1 6 6 H 1.48494 * 109.47343 * 59.99809 * 3 2 1 7 7 C 1.37872 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99939 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99991 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47033 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46970 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47199 * 60.00549 * 11 10 9 13 13 N 1.46901 * 109.47449 * 59.99555 * 12 11 10 14 14 C 1.46898 * 111.00283 * 155.00473 * 13 12 11 15 15 C 1.52997 * 109.47386 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.46832 * 304.99869 * 15 14 13 17 17 C 1.53006 * 109.47127 * 64.99548 * 15 14 13 18 18 C 1.52997 * 109.47127 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47060 * 300.00449 * 18 17 15 20 20 C 1.52996 * 109.47328 * 60.00126 * 19 18 17 21 21 C 1.52997 * 109.47232 * 184.99670 * 15 14 13 22 22 H 1.09002 * 109.47045 * 59.99942 * 21 15 14 23 23 O 1.42896 * 109.47412 * 299.99981 * 21 15 14 24 24 C 1.53005 * 109.46712 * 299.99610 * 12 11 10 25 25 C 1.52996 * 109.46970 * 60.00250 * 24 12 11 26 26 H 0.96998 * 120.00514 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47318 * 300.00445 * 9 7 2 28 28 H 1.08999 * 109.47233 * 60.00153 * 10 9 7 29 29 H 1.08996 * 109.47230 * 300.00252 * 10 9 7 30 30 H 1.08996 * 109.47376 * 300.00195 * 11 10 9 31 31 H 1.09007 * 109.46984 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47639 * 179.97438 * 12 11 10 33 33 H 1.00898 * 110.99971 * 278.95904 * 13 12 11 34 34 H 1.09004 * 109.47163 * 59.99599 * 14 13 12 35 35 H 1.09002 * 109.46852 * 300.00147 * 14 13 12 36 36 H 1.08998 * 109.46505 * 59.99871 * 17 15 14 37 37 H 1.08996 * 109.46884 * 300.00752 * 17 15 14 38 38 H 1.09002 * 109.47153 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.46832 * 60.00321 * 18 17 15 40 40 H 1.09004 * 109.46724 * 180.02562 * 19 18 17 41 41 H 1.09001 * 109.47194 * 299.99650 * 19 18 17 42 42 H 1.08992 * 109.47554 * 59.99639 * 20 19 18 43 43 H 1.09004 * 109.47108 * 179.97438 * 20 19 18 44 44 H 0.96699 * 114.00604 * 180.02562 * 23 21 15 45 45 H 1.09007 * 109.46987 * 179.97438 * 24 12 11 46 46 H 1.08996 * 109.47230 * 299.99966 * 24 12 11 47 47 H 1.09007 * 109.46984 * 179.97438 * 25 24 12 48 48 H 1.08996 * 109.47376 * 59.99805 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 0.6006 -5.0685 -1.2489 13 7 1.4447 -4.9910 -2.4486 14 6 0.7897 -5.6337 -3.5957 15 6 1.6974 -5.5335 -4.8233 16 1 1.9563 -4.4895 -4.9995 17 6 2.9739 -6.3416 -4.5810 18 6 3.8812 -6.2420 -5.8088 19 6 3.1487 -6.7997 -7.0309 20 6 1.8724 -5.9916 -7.2731 21 6 0.9653 -6.0908 -6.0457 22 1 0.0559 -5.5151 -6.2183 23 8 0.6258 -7.4595 -5.8147 24 6 -0.3938 -3.9056 -1.2489 25 6 0.3712 -2.5806 -1.2495 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6043 0.8894 29 1 2.8721 -3.6042 -0.8905 30 1 0.8542 -5.0445 0.8903 31 1 2.1889 -5.8155 0.0006 32 1 0.0559 -6.0127 -1.2487 33 1 1.6863 -4.0343 -2.6595 34 1 -0.1565 -5.1330 -3.8012 35 1 0.6033 -6.6829 -3.3667 36 1 2.7149 -7.3856 -4.4047 37 1 3.4953 -5.9446 -3.7101 38 1 4.7904 -6.8181 -5.6364 39 1 4.1402 -5.1981 -5.9855 40 1 3.7954 -6.7291 -7.9055 41 1 2.8898 -7.8436 -6.8542 42 1 2.1312 -4.9477 -7.4498 43 1 1.3508 -6.3886 -8.1441 44 1 0.1586 -7.8785 -6.5503 45 1 -1.0204 -3.9634 -2.1389 46 1 -1.0201 -3.9631 -0.3587 47 1 -0.3372 -1.7521 -1.2500 48 1 0.9976 -2.5231 -2.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331311.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:14 Heat of formation + Delta-G solvation = -92.953943 kcal Electronic energy + Delta-G solvation = -23545.637178 eV Core-core repulsion = 20405.198188 eV Total energy + Delta-G solvation = -3140.438990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.55133 -38.25399 -35.21131 -34.35815 -32.56803 -30.65950 -29.89515 -29.54639 -28.22753 -24.78666 -24.12656 -22.53898 -21.51428 -21.01033 -20.66436 -19.68804 -17.92446 -16.92097 -16.27212 -15.91713 -15.22444 -14.97653 -14.54638 -14.23300 -14.12404 -13.86668 -13.30170 -13.17304 -12.90044 -12.56919 -12.50698 -12.05933 -11.99129 -11.88617 -11.61916 -11.45277 -11.22556 -11.05882 -10.91571 -10.75479 -10.65841 -10.58139 -10.40314 -10.10136 -10.00798 -9.90160 -9.81054 -9.70674 -9.25382 -8.83156 -8.57481 -8.24240 -7.76936 -5.93444 -3.99208 3.31322 3.39665 3.43999 4.17776 4.45138 4.48091 4.66128 4.79033 4.89890 5.12022 5.26109 5.35712 5.37312 5.41358 5.49228 5.52716 5.61010 5.68107 5.71905 5.80356 5.88314 5.91624 5.96927 6.08580 6.14172 6.23026 6.26750 6.30871 6.35676 6.48659 6.52939 6.58069 6.64016 6.69480 6.76385 6.88669 7.06013 7.26313 7.28700 7.56970 7.58326 7.63121 7.80682 7.97002 8.09971 8.21692 8.54241 9.06058 9.65436 11.11840 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.004065 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.125254 B = 6886.812453 C = 7344.582692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.106 4.106 11 C -0.103 4.103 12 C 0.094 3.906 13 N -0.682 5.682 14 C 0.069 3.931 15 C -0.075 4.075 16 H 0.077 0.923 17 C -0.100 4.100 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.151 4.151 21 C 0.110 3.890 22 H 0.050 0.950 23 O -0.558 6.558 24 C -0.148 4.148 25 C -0.106 4.106 26 H 0.257 0.743 27 H 0.022 0.978 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.347 0.653 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.370 0.630 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.089 0.911 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -13.518 -13.145 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.141 4.141 12 C -0.016 4.016 13 N -0.316 5.316 14 C -0.061 4.061 15 C -0.094 4.094 16 H 0.096 0.904 17 C -0.138 4.138 18 C -0.160 4.160 19 C -0.151 4.151 20 C -0.189 4.189 21 C 0.051 3.949 22 H 0.068 0.932 23 O -0.363 6.363 24 C -0.187 4.187 25 C -0.144 4.144 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.216 0.784 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.108 0.892 48 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.131 -13.818 -12.400 18.688 hybrid contribution -0.672 1.635 -0.888 1.978 sum 1.459 -12.183 -13.289 18.087 Atomic orbital electron populations 1.69892 1.05839 1.26028 1.51384 1.24971 0.94797 0.98935 0.95365 0.86621 0.80257 0.84168 0.77454 1.19821 1.21200 1.21160 1.21313 0.92941 0.90818 1.49628 0.92761 1.18652 0.92680 0.91728 0.93952 1.21563 0.98548 0.94135 1.00117 1.21512 0.98211 0.98691 0.95679 1.21456 0.92645 0.96842 0.90662 1.60716 1.43717 1.23917 1.03237 1.21879 0.94353 0.99715 0.90149 1.21163 0.95864 0.99355 0.93026 0.90442 1.21378 0.94482 1.00522 0.97378 1.21582 0.98291 1.00772 0.95310 1.21431 0.95815 1.00042 0.97826 1.22224 0.97525 1.01366 0.97764 1.21791 0.95771 0.82790 0.94558 0.93155 1.86561 1.79513 1.25168 1.45035 1.22254 0.98281 0.98054 1.00104 1.21571 0.99407 0.94819 0.98599 0.93278 0.95987 0.94029 0.92820 0.92958 0.93146 0.92413 0.83086 0.96059 0.90930 0.91676 0.90614 0.92301 0.92342 0.92722 0.91567 0.91144 0.92150 0.78399 0.94423 0.92531 0.89221 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.24 4.90 -26.73 -0.13 -2.37 16 11 C -0.10 -1.87 5.64 -26.73 -0.15 -2.02 16 12 C 0.09 1.63 2.86 -67.71 -0.19 1.44 16 13 N -0.68 -11.12 5.22 -106.72 -0.56 -11.68 16 14 C 0.07 0.99 4.66 -3.83 -0.02 0.97 16 15 C -0.08 -0.93 2.16 -90.62 -0.20 -1.13 16 16 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 17 C -0.10 -1.24 4.95 -26.73 -0.13 -1.37 16 18 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 19 C -0.11 -1.05 5.78 -26.73 -0.15 -1.21 16 20 C -0.15 -1.34 5.63 -26.76 -0.15 -1.49 16 21 C 0.11 1.14 3.21 -26.76 -0.09 1.06 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 O -0.56 -5.74 11.39 -35.23 -0.40 -6.14 16 24 C -0.15 -2.86 5.52 -26.73 -0.15 -3.01 16 25 C -0.11 -2.44 4.73 -26.73 -0.13 -2.56 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 1.13 7.21 -51.93 -0.37 0.76 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.95 7.80 -51.93 -0.40 0.55 16 33 H 0.35 6.18 5.56 -39.29 -0.22 5.97 16 34 H 0.02 0.32 7.44 -51.93 -0.39 -0.07 16 35 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 36 H 0.06 0.87 7.68 -51.93 -0.40 0.47 16 37 H 0.08 1.05 7.75 -51.93 -0.40 0.64 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.64 7.68 -51.93 -0.40 0.24 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.37 2.31 9.08 45.56 0.41 2.73 16 45 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 48 H 0.03 0.70 6.26 -51.93 -0.32 0.37 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -28.37 352.19 -10.49 -38.85 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -8.21 Total: 7.03 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -2.23 Total: -24.85 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.07 Total: -36.56 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.40 Total: -6.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.37 -10.49 -38.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331311.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.103 kcal (2) G-P(sol) polarization free energy of solvation -28.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds