Wall clock time and date at job start Tue Mar 31 2020 05:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.63523 * 2 1 4 4 C 1.54310 * 109.63555 * 239.60152 * 2 1 3 5 5 C 1.45874 * 112.19625 * 161.74712 * 4 2 1 6 6 C 1.54316 * 112.17833 * 61.12090 * 5 4 2 7 7 C 1.50447 * 108.66799 * 281.38210 * 6 5 4 8 8 N 1.48200 * 112.71908 * 93.49322 * 7 6 5 9 9 C 1.46897 * 111.00561 * 191.53568 * 8 7 6 10 10 C 1.52998 * 109.46917 * 316.98131 * 9 8 7 11 11 C 1.53000 * 109.47404 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47012 * 60.00073 * 11 10 9 13 13 C 1.50700 * 109.46896 * 60.00069 * 12 11 10 14 14 H 1.08002 * 119.99631 * 239.99681 * 13 12 11 15 15 C 1.37879 * 119.99933 * 60.00453 * 13 12 11 16 16 N 1.31509 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99764 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47056 * 59.99840 * 17 15 13 19 19 H 1.48501 * 109.46953 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47384 * 299.99639 * 17 15 13 21 21 C 1.52998 * 109.46976 * 300.00189 * 12 11 10 22 22 C 1.53000 * 109.47404 * 60.00051 * 21 12 11 23 23 C 1.48002 * 114.76997 * 318.40003 * 8 7 6 24 24 H 1.08994 * 109.47221 * 180.39959 * 1 2 3 25 25 H 1.09004 * 109.47082 * 300.39989 * 1 2 3 26 26 H 1.09000 * 109.46950 * 60.39970 * 1 2 3 27 27 H 0.96702 * 113.99793 * 299.60576 * 3 2 1 28 28 H 1.09003 * 108.93280 * 41.05133 * 4 2 1 29 29 H 1.08998 * 108.93583 * 282.45384 * 4 2 1 30 30 H 1.08999 * 108.94320 * 300.43019 * 5 4 2 31 31 H 1.08994 * 108.86838 * 181.76403 * 5 4 2 32 32 H 1.09008 * 109.63282 * 41.18332 * 6 5 4 33 33 H 1.08992 * 109.63459 * 161.57624 * 6 5 4 34 34 H 1.08997 * 108.81407 * 214.68747 * 7 6 5 35 35 H 1.09004 * 108.80792 * 332.95589 * 7 6 5 36 36 H 1.09005 * 109.47474 * 76.98027 * 9 8 7 37 37 H 1.09005 * 109.47667 * 299.99955 * 10 9 8 38 38 H 1.09006 * 109.47618 * 59.99988 * 10 9 8 39 39 H 1.08999 * 109.47200 * 300.00507 * 11 10 9 40 40 H 1.09000 * 109.47625 * 179.97438 * 11 10 9 41 41 H 1.08994 * 109.47092 * 180.02562 * 12 11 10 42 42 H 0.97001 * 120.00170 * 179.97438 * 16 15 13 43 43 H 1.08999 * 109.47356 * 299.99640 * 21 12 11 44 44 H 1.09002 * 109.47048 * 179.97438 * 21 12 11 45 45 H 1.09000 * 109.47625 * 180.02562 * 22 21 12 46 46 H 1.08999 * 109.47200 * 59.99493 * 22 21 12 47 47 H 1.09000 * 108.80939 * 197.10740 * 23 8 7 48 48 H 1.08999 * 108.80970 * 78.83530 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0102 1.3459 0.0000 4 6 2.0485 -0.7354 -1.2536 5 6 3.4418 -0.4151 -1.5435 6 6 4.3858 -0.8284 -0.3949 7 6 4.2941 0.2015 0.6980 8 7 3.3006 -0.1549 1.7384 9 6 3.0411 0.9829 2.6305 10 6 4.3640 1.6648 2.9852 11 6 4.0938 2.8504 3.9138 12 6 3.4177 2.3525 5.1929 13 6 4.3209 1.3661 5.8873 14 1 3.9849 0.3541 6.0585 15 6 5.5762 1.7557 6.3041 16 7 5.9853 2.9880 6.0952 17 14 6.6955 0.5332 7.1654 18 1 6.9577 -0.6178 6.2645 19 1 7.9797 1.1949 7.5091 20 1 6.0391 0.0505 8.4069 21 6 2.0948 1.6706 4.8382 22 6 2.3650 0.4851 3.9095 23 6 2.0355 -0.7213 1.2196 24 1 -0.3633 -1.0276 0.0072 25 1 -0.3633 0.5200 0.8864 26 1 -0.3633 0.5076 -0.8936 27 1 1.7313 1.8630 -0.7681 28 1 1.4350 -0.4521 -2.1089 29 1 1.9580 -1.8101 -1.0959 30 1 3.5315 0.6590 -1.7060 31 1 3.7415 -0.9363 -2.4526 32 1 4.0860 -1.8019 -0.0068 33 1 5.4101 -0.8809 -0.7636 34 1 5.2743 0.3096 1.1623 35 1 4.0090 1.1569 0.2575 36 1 2.3876 1.6966 2.1286 37 1 5.0176 0.9513 3.4871 38 1 4.8456 2.0200 2.0740 39 1 3.4405 3.5638 3.4116 40 1 5.0363 3.3359 4.1669 41 1 3.2248 3.1971 5.8543 42 1 6.8683 3.2622 6.3887 43 1 1.4415 2.3841 4.3359 44 1 1.6133 1.3156 5.7494 45 1 1.4225 -0.0005 3.6564 46 1 3.0183 -0.2283 4.4118 47 1 1.2780 -0.6637 2.0013 48 1 2.1973 -1.7691 0.9665 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:53 Heat of formation + Delta-G solvation = -60.957954 kcal Electronic energy + Delta-G solvation = -24802.587366 eV Core-core repulsion = 21663.535827 eV Total energy + Delta-G solvation = -3139.051539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.17817 -37.59010 -35.27528 -33.90394 -32.32899 -31.85118 -29.54512 -28.79711 -27.62300 -25.38731 -24.45779 -23.55213 -21.15793 -20.71269 -20.14206 -19.24267 -18.41189 -16.54710 -16.02075 -15.66064 -15.58936 -14.95586 -14.49742 -13.98829 -13.74708 -13.56004 -13.22800 -12.95052 -12.65567 -12.61716 -12.34577 -12.24845 -12.05026 -11.75116 -11.40974 -11.33033 -11.18112 -10.88988 -10.78680 -10.68084 -10.57195 -10.48325 -10.34864 -10.23380 -10.09476 -9.88246 -9.59149 -9.38881 -8.98663 -8.64431 -8.45440 -8.12938 -7.41953 -5.83042 -3.86115 3.41471 3.45374 3.49206 4.07795 4.48242 4.56776 4.57112 4.83760 4.84522 5.04077 5.29822 5.31629 5.47504 5.51621 5.57833 5.60610 5.74232 5.82727 5.87049 5.96084 5.99456 6.02176 6.12196 6.14867 6.22170 6.24682 6.35568 6.51050 6.56203 6.62093 6.67829 6.77105 6.81036 6.94454 6.96114 6.99957 7.30262 7.42051 7.62131 7.66668 7.71118 7.82170 7.91395 7.94733 8.10683 8.31728 8.64470 9.15676 9.76108 11.22969 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024778 B = 0.005287 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.756257 B = 5294.339111 C = 5698.154787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 O -0.539 6.539 4 C -0.140 4.140 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.061 3.939 8 N -0.533 5.533 9 C 0.102 3.898 10 C -0.093 4.093 11 C -0.106 4.106 12 C 0.044 3.956 13 C -0.494 4.494 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.883 3.117 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.105 4.105 22 C -0.096 4.096 23 C 0.069 3.931 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.362 0.638 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.030 0.970 39 H 0.010 0.990 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.257 0.743 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 -5.988 -15.817 18.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.061 3.939 3 O -0.343 6.343 4 C -0.178 4.178 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.066 4.066 8 N -0.257 5.257 9 C -0.005 4.005 10 C -0.131 4.131 11 C -0.144 4.144 12 C 0.026 3.974 13 C -0.532 4.532 14 H 0.072 0.928 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.712 3.288 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.059 4.059 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.209 0.791 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.029 0.971 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.685 -6.428 -14.965 18.009 hybrid contribution -0.041 0.034 -0.649 0.651 sum -7.726 -6.393 -15.613 18.556 Atomic orbital electron populations 1.22493 0.95928 1.02406 1.02311 1.21781 0.92358 0.83151 0.96619 1.86816 1.76210 1.22984 1.48340 1.21229 0.97387 1.01174 0.98004 1.20480 0.94764 1.01756 0.98250 1.21437 0.98825 1.00053 0.95407 1.21856 0.95826 0.97550 0.91367 1.61827 1.09647 1.34826 1.19419 1.21608 0.97647 0.89663 0.91612 1.21487 0.95586 0.98625 0.97365 1.21495 1.02165 0.95166 0.95569 1.18676 0.90414 0.95175 0.93123 1.21113 0.99211 0.97042 1.35881 0.92783 1.24915 0.97978 0.94921 0.96150 1.69865 1.19248 1.16652 1.47588 0.86800 0.80142 0.81722 0.80180 1.20324 1.21577 1.20541 1.21540 0.99219 0.96434 0.97148 1.21487 0.97898 0.98614 0.95403 1.22029 0.92585 0.97511 0.93822 0.91767 0.91628 0.92775 0.79086 0.92617 0.91523 0.91821 0.92865 0.91439 0.91828 0.91650 0.92501 0.93751 0.90907 0.95095 0.97143 0.89267 0.96116 0.93290 0.95205 0.93777 0.95156 0.90839 0.90745 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 8.51 37.16 0.32 -1.36 16 2 C 0.10 1.17 0.99 -91.21 -0.09 1.08 16 3 O -0.54 -6.79 6.93 -35.23 -0.24 -7.03 16 4 C -0.14 -1.36 4.56 -29.42 -0.13 -1.49 16 5 C -0.12 -1.19 5.21 -29.41 -0.15 -1.35 16 6 C -0.12 -1.49 5.61 -27.32 -0.15 -1.64 16 7 C 0.06 0.95 3.69 -4.38 -0.02 0.93 16 8 N -0.53 -9.00 4.54 -227.74 -1.03 -10.04 16 9 C 0.10 1.97 1.71 -67.71 -0.12 1.86 16 10 C -0.09 -2.05 4.17 -26.73 -0.11 -2.16 16 11 C -0.11 -2.57 5.24 -26.73 -0.14 -2.71 16 12 C 0.04 1.13 2.59 -91.77 -0.24 0.89 16 13 C -0.49 -13.52 6.61 -34.44 -0.23 -13.75 16 14 H 0.05 1.48 6.71 -52.49 -0.35 1.13 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 17 Si 0.88 21.77 29.54 -169.99 -5.02 16.75 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.11 -2.29 5.41 -26.73 -0.14 -2.44 16 22 C -0.10 -1.94 4.99 -26.73 -0.13 -2.08 16 23 C 0.07 0.96 4.57 -4.49 -0.02 0.94 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.36 3.31 9.05 45.56 0.41 3.72 16 28 H 0.06 0.47 7.99 -51.93 -0.42 0.05 16 29 H 0.07 0.64 7.52 -51.93 -0.39 0.24 16 30 H 0.06 0.68 6.83 -51.93 -0.35 0.33 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.87 7.08 -51.92 -0.37 0.50 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.13 6.97 -51.93 -0.36 0.77 16 35 H 0.06 0.92 5.00 -51.93 -0.26 0.66 16 36 H 0.04 0.89 6.32 -51.93 -0.33 0.56 16 37 H 0.07 1.81 7.22 -51.93 -0.37 1.44 16 38 H 0.03 0.64 6.44 -51.93 -0.33 0.31 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.55 6.32 -51.93 -0.33 0.22 16 46 H 0.07 1.65 6.62 -51.93 -0.34 1.30 16 47 H 0.07 1.09 5.47 -51.93 -0.28 0.80 16 48 H 0.07 0.93 6.59 -51.93 -0.34 0.59 16 LS Contribution 332.54 15.07 5.01 5.01 Total: -1.00 -28.95 332.54 -9.79 -38.74 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.68 Total: 3.50 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.46 Total: -21.69 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.41 Total: -35.28 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.24 Total: -7.03 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.95 -9.79 -38.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.217 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds