Wall clock time and date at job start Tue Mar 31 2020 05:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42899 * 108.75777 * 2 1 4 4 C 1.50592 * 108.81833 * 118.30303 * 2 1 3 5 5 C 1.54524 * 108.83706 * 212.71431 * 4 2 1 6 6 C 1.45884 * 111.60775 * 282.66484 * 5 4 2 7 7 C 1.53978 * 112.66604 * 61.53167 * 6 5 4 8 8 N 1.44302 * 108.31597 * 278.58908 * 7 6 5 9 9 C 1.46900 * 111.00043 * 221.35070 * 8 7 6 10 10 C 1.53008 * 109.46922 * 68.37488 * 9 8 7 11 11 C 1.52996 * 109.46891 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47207 * 59.99973 * 11 10 9 13 13 C 1.50702 * 109.47220 * 60.00051 * 12 11 10 14 14 H 1.07999 * 119.99990 * 239.99853 * 13 12 11 15 15 C 1.37876 * 119.99898 * 59.99620 * 13 12 11 16 16 N 1.31515 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99993 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46914 * 60.00040 * 17 15 13 19 19 H 1.48496 * 109.47241 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47165 * 300.00658 * 17 15 13 21 21 C 1.52997 * 109.47344 * 299.99474 * 12 11 10 22 22 C 1.53002 * 109.47302 * 308.37826 * 9 8 7 23 23 C 1.47939 * 113.64181 * 95.40319 * 8 7 6 24 24 H 1.08999 * 109.46740 * 178.34871 * 1 2 3 25 25 H 1.09002 * 109.46968 * 298.34806 * 1 2 3 26 26 H 1.08997 * 109.46969 * 58.34932 * 1 2 3 27 27 H 0.96706 * 113.99989 * 61.65107 * 3 2 1 28 28 H 1.08998 * 109.64025 * 92.87586 * 4 2 1 29 29 H 1.08995 * 109.52898 * 332.48657 * 4 2 1 30 30 H 1.09001 * 109.04162 * 162.14425 * 5 4 2 31 31 H 1.08996 * 109.04662 * 43.19390 * 5 4 2 32 32 H 1.08997 * 108.84333 * 182.35663 * 6 5 4 33 33 H 1.09005 * 108.84105 * 300.71617 * 6 5 4 34 34 H 1.09005 * 109.69229 * 38.29842 * 7 6 5 35 35 H 1.09000 * 109.69629 * 158.83977 * 7 6 5 36 36 H 1.08996 * 109.46945 * 188.37251 * 9 8 7 37 37 H 1.09004 * 109.46841 * 299.99812 * 10 9 8 38 38 H 1.08997 * 109.46884 * 59.99855 * 10 9 8 39 39 H 1.09005 * 109.47418 * 300.00040 * 11 10 9 40 40 H 1.09006 * 109.46819 * 179.97438 * 11 10 9 41 41 H 1.09005 * 109.46688 * 180.02562 * 12 11 10 42 42 H 0.97005 * 119.99719 * 179.97438 * 16 15 13 43 43 H 1.08996 * 109.47341 * 300.00599 * 21 12 11 44 44 H 1.09000 * 109.47082 * 179.97438 * 21 12 11 45 45 H 1.09006 * 109.46841 * 299.99605 * 22 9 8 46 46 H 1.08996 * 109.47590 * 59.99819 * 22 9 8 47 47 H 1.09003 * 108.71631 * 79.13430 * 23 8 7 48 48 H 1.08999 * 108.70955 * 197.27155 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 1.9896 1.3531 0.0000 4 6 2.0158 -0.6758 1.2550 5 6 3.3415 -0.0157 1.6961 6 6 4.4650 -0.4727 0.8855 7 6 4.3048 -0.1182 -0.6043 8 7 3.4453 -1.1033 -1.2150 9 6 3.9453 -1.4884 -2.5415 10 6 5.2537 -2.2664 -2.3872 11 6 5.7748 -2.6670 -3.7688 12 6 6.0246 -1.4096 -4.6039 13 6 7.0461 -0.5428 -3.9136 14 1 6.7879 0.4624 -3.6149 15 6 8.3102 -1.0332 -3.6635 16 7 8.6247 -2.2571 -4.0277 17 14 9.5766 0.0414 -2.8085 18 1 9.0710 0.4309 -1.4677 19 1 10.8465 -0.7135 -2.6592 20 1 9.8190 1.2615 -3.6196 21 6 4.7163 -0.6316 -4.7583 22 6 4.1951 -0.2313 -3.3772 23 6 2.0258 -0.6919 -1.2824 24 1 -0.3633 -1.0272 -0.0296 25 1 -0.3633 0.4880 0.9044 26 1 -0.3633 0.5392 -0.8748 27 1 1.7188 1.8604 0.7775 28 1 2.1827 -1.7351 1.0596 29 1 1.2710 -0.5609 2.0424 30 1 3.5322 -0.2638 2.7402 31 1 3.2497 1.0661 1.5989 32 1 5.3795 -0.0132 1.2605 33 1 4.5517 -1.5550 0.9825 34 1 3.8566 0.8708 -0.7004 35 1 5.2800 -0.1282 -1.0912 36 1 3.2064 -2.1155 -3.0403 37 1 5.9926 -1.6393 -1.8883 38 1 5.0758 -3.1620 -1.7918 39 1 5.0360 -3.2939 -4.2681 40 1 6.7072 -3.2209 -3.6588 41 1 6.3955 -1.6950 -5.5883 42 1 9.5142 -2.6019 -3.8520 43 1 3.9775 -1.2585 -5.2575 44 1 4.8944 0.2644 -5.3529 45 1 3.2629 0.3230 -3.4871 46 1 4.9340 0.3958 -2.8784 47 1 1.8997 -0.0066 -2.1206 48 1 1.4136 -1.5762 -1.4596 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331376.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:55 Heat of formation + Delta-G solvation = -63.953847 kcal Electronic energy + Delta-G solvation = -24737.405414 eV Core-core repulsion = 21598.223963 eV Total energy + Delta-G solvation = -3139.181451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09923 -38.00022 -35.35043 -33.80501 -32.29662 -31.81016 -29.59848 -28.45212 -27.60869 -25.39582 -24.63576 -23.78129 -21.52595 -20.59367 -19.96171 -19.26035 -18.25443 -16.75346 -16.06008 -15.81639 -15.39905 -14.65670 -14.53076 -14.11455 -13.80492 -13.51570 -13.23177 -12.99195 -12.84184 -12.70557 -12.55452 -12.21955 -11.68769 -11.62651 -11.46321 -11.30489 -11.27148 -10.93404 -10.81954 -10.64942 -10.53507 -10.42470 -10.34054 -10.20697 -9.96437 -9.93381 -9.72040 -9.44795 -9.08604 -8.80750 -8.56160 -8.19441 -7.52668 -5.89851 -3.93845 3.35529 3.40523 3.43309 4.19496 4.30303 4.50045 4.73073 4.86938 4.97690 5.22488 5.37911 5.40710 5.44885 5.55261 5.59988 5.71078 5.73194 5.81994 5.89721 5.96279 6.01263 6.06573 6.13175 6.24222 6.32544 6.34643 6.41581 6.45892 6.55028 6.62488 6.65809 6.71525 6.81182 6.86564 6.89233 6.95318 7.16454 7.27644 7.52382 7.65059 7.67073 7.78337 7.81390 7.88597 8.04536 8.25247 8.56889 9.08042 9.68896 11.15969 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.005628 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.303454 B = 4973.621036 C = 5554.039577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 O -0.555 6.555 4 C -0.139 4.139 5 C -0.109 4.109 6 C -0.113 4.113 7 C 0.051 3.949 8 N -0.540 5.540 9 C 0.095 3.905 10 C -0.087 4.087 11 C -0.107 4.107 12 C 0.044 3.956 13 C -0.499 4.499 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.279 1.279 21 C -0.103 4.103 22 C -0.134 4.134 23 C 0.075 3.925 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.367 0.633 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.012 0.988 40 H 0.091 0.909 41 H 0.022 0.978 42 H 0.258 0.742 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.381 3.087 9.902 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.092 3.908 3 O -0.361 6.361 4 C -0.176 4.176 5 C -0.147 4.147 6 C -0.151 4.151 7 C -0.077 4.077 8 N -0.263 5.263 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.146 4.146 12 C 0.026 3.974 13 C -0.537 4.537 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.710 3.290 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.205 1.205 21 C -0.142 4.142 22 C -0.172 4.172 23 C -0.052 4.052 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.215 0.785 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.031 0.969 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.955 2.376 9.638 17.125 hybrid contribution 0.365 1.395 0.530 1.536 sum -13.589 3.771 10.168 17.386 Atomic orbital electron populations 1.22559 0.96127 1.02622 1.02185 1.20976 0.91855 0.82368 0.95578 1.86692 1.78086 1.23512 1.47826 1.22052 0.97308 1.02132 0.96150 1.20480 0.94759 1.00965 0.98476 1.20432 0.97111 1.01773 0.95771 1.22007 0.97754 0.94364 0.93568 1.61040 1.00484 1.42281 1.22528 1.21725 0.97321 0.95790 0.86366 1.21379 0.94578 0.97918 0.98588 1.21515 0.99931 0.99043 0.94061 1.18685 0.90562 0.92442 0.95755 1.21079 0.95929 0.99068 1.37611 0.92986 1.24909 0.98091 0.94865 0.95935 1.69860 1.20301 1.15182 1.47663 0.86828 0.81193 0.80718 0.80299 1.20319 1.21433 1.20506 1.21499 0.98633 0.99152 0.94867 1.22055 0.99059 0.98119 0.97995 1.22314 0.90552 0.97757 0.94625 0.91606 0.92425 0.92010 0.78529 0.90099 0.92575 0.93243 0.91636 0.92979 0.91788 0.91933 0.90253 0.92055 0.91014 0.94453 0.96929 0.89065 0.95962 0.93169 0.95040 0.93879 0.94933 0.90821 0.94021 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.62 8.44 37.16 0.31 -1.31 16 2 C 0.13 1.52 0.91 -91.34 -0.08 1.44 16 3 O -0.55 -6.63 9.00 -35.23 -0.32 -6.95 16 4 C -0.14 -1.52 5.01 -27.14 -0.14 -1.66 16 5 C -0.11 -1.29 5.25 -29.30 -0.15 -1.45 16 6 C -0.11 -1.65 5.37 -29.59 -0.16 -1.81 16 7 C 0.05 0.86 3.96 -4.70 -0.02 0.84 16 8 N -0.54 -8.86 3.91 -226.65 -0.89 -9.75 16 9 C 0.10 1.78 2.14 -67.71 -0.14 1.63 16 10 C -0.09 -1.85 4.98 -26.73 -0.13 -1.98 16 11 C -0.11 -2.52 5.24 -26.73 -0.14 -2.66 16 12 C 0.04 1.09 2.59 -91.77 -0.24 0.85 16 13 C -0.50 -13.30 6.61 -34.44 -0.23 -13.53 16 14 H 0.05 1.39 6.71 -52.49 -0.35 1.04 16 15 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 16 N -0.89 -25.27 11.32 55.43 0.63 -24.64 16 17 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.10 -2.20 5.41 -26.76 -0.14 -2.34 16 22 C -0.13 -2.62 4.46 -26.76 -0.12 -2.74 16 23 C 0.08 1.06 4.39 -2.77 -0.01 1.05 16 24 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 25 H 0.06 0.44 7.99 -51.93 -0.41 0.03 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.37 3.06 8.19 45.56 0.37 3.43 16 28 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 29 H 0.06 0.51 7.64 -51.93 -0.40 0.12 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.74 5.92 -51.93 -0.31 0.43 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.06 1.08 5.52 -51.93 -0.29 0.79 16 35 H 0.08 1.58 4.95 -51.93 -0.26 1.32 16 36 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 37 H 0.07 1.69 5.61 -51.93 -0.29 1.40 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.03 0.60 6.75 -51.93 -0.35 0.25 16 46 H 0.07 1.59 4.87 -51.93 -0.25 1.34 16 47 H 0.04 0.65 6.54 -51.93 -0.34 0.31 16 48 H 0.07 0.99 7.95 -51.93 -0.41 0.57 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -27.82 335.24 -9.82 -37.63 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.78 Total: 4.40 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.49 Total: -22.05 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: -0.26 Total: -34.39 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.32 Total: -6.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.82 -9.82 -37.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331376.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.322 kcal (2) G-P(sol) polarization free energy of solvation -27.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds