Wall clock time and date at job start Tue Mar 31 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 108.96662 * 2 1 4 4 C 1.54161 * 108.97965 * 241.18831 * 2 1 3 5 5 C 1.50758 * 112.60917 * 197.93056 * 4 2 1 6 6 C 1.54433 * 109.02834 * 93.01589 * 5 4 2 7 7 N 1.39769 * 111.77215 * 282.59391 * 6 5 4 8 8 C 1.46901 * 111.00375 * 189.12574 * 7 6 5 9 9 C 1.53000 * 109.46769 * 306.04532 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46963 * 299.99499 * 10 9 8 12 12 C 1.50703 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 240.00190 * 12 11 10 14 14 C 1.37880 * 119.99788 * 60.00122 * 12 11 10 15 15 N 1.31510 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99568 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47545 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46892 * 120.00078 * 16 14 12 19 19 H 1.48496 * 109.47356 * 239.99680 * 16 14 12 20 20 C 1.52997 * 109.47092 * 60.00194 * 11 10 9 21 21 C 1.53002 * 109.46860 * 66.04292 * 8 7 6 22 22 C 1.47635 * 114.76211 * 62.27115 * 7 6 5 23 23 C 1.50823 * 108.05040 * 277.20461 * 22 7 6 24 24 H 1.08994 * 109.47166 * 178.81435 * 1 2 3 25 25 H 1.09009 * 109.46996 * 298.81303 * 1 2 3 26 26 H 1.08996 * 109.47316 * 58.80961 * 1 2 3 27 27 H 0.96705 * 113.99495 * 301.19062 * 3 2 1 28 28 H 1.08994 * 108.85963 * 77.12349 * 4 2 1 29 29 H 1.09003 * 108.85943 * 318.73511 * 4 2 1 30 30 H 1.08990 * 109.54475 * 333.15378 * 5 4 2 31 31 H 1.09005 * 109.61866 * 212.92164 * 5 4 2 32 32 H 1.09001 * 109.02110 * 161.99780 * 6 5 4 33 33 H 1.09009 * 109.01720 * 43.18044 * 6 5 4 34 34 H 1.09002 * 109.47401 * 186.04239 * 8 7 6 35 35 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 37 37 H 1.09000 * 109.47437 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 39 39 H 1.09002 * 109.47067 * 300.00341 * 11 10 9 40 40 H 0.96996 * 119.99480 * 180.02562 * 15 14 12 41 41 H 1.09001 * 109.47375 * 180.02562 * 20 11 10 42 42 H 1.09002 * 109.47497 * 59.99850 * 20 11 10 43 43 H 1.09002 * 109.47075 * 299.99593 * 21 8 7 44 44 H 1.08996 * 109.47407 * 60.00550 * 21 8 7 45 45 H 1.09003 * 109.74142 * 36.83623 * 22 7 6 46 46 H 1.09001 * 109.74718 * 157.56292 * 22 7 6 47 47 H 1.08999 * 109.05110 * 334.49946 * 23 22 7 48 48 H 1.08999 * 108.98907 * 215.56370 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9945 1.3514 0.0000 4 6 2.0314 -0.7026 -1.2773 5 6 3.4720 -1.1346 -1.1737 6 6 3.5252 -2.5934 -0.6697 7 7 3.2987 -2.6747 0.7071 8 6 3.5648 -4.0308 1.2053 9 6 2.7520 -5.0410 0.3930 10 6 3.0286 -6.4534 0.9122 11 6 4.5195 -6.7662 0.7699 12 6 4.7919 -8.1576 1.2807 13 1 5.4762 -8.3066 2.1028 14 6 4.1674 -9.2403 0.6985 15 7 3.3345 -9.0587 -0.3028 16 14 4.5056 -10.9649 1.3313 17 1 5.4733 -10.8988 2.4557 18 1 3.2377 -11.5757 1.8053 19 1 5.0741 -11.7913 0.2363 20 6 5.3323 -5.7560 1.5821 21 6 5.0557 -4.3432 1.0625 22 6 1.9703 -2.2017 1.1443 23 6 2.0287 -0.7003 1.2755 24 1 -0.3633 -1.0274 -0.0213 25 1 -0.3633 0.4953 0.9005 26 1 -0.3634 0.5322 -0.8791 27 1 1.6896 1.8720 -0.7558 28 1 1.9286 -0.0181 -2.1193 29 1 1.4128 -1.5808 -1.4624 30 1 3.9973 -0.4870 -0.4719 31 1 3.9449 -1.0699 -2.1538 32 1 4.5069 -3.0110 -0.8936 33 1 2.7654 -3.1768 -1.1898 34 1 3.2790 -4.0949 2.2552 35 1 1.6898 -4.8185 0.4946 36 1 3.0377 -4.9770 -0.6569 37 1 2.4499 -7.1732 0.3332 38 1 2.7425 -6.5171 1.9621 39 1 4.8055 -6.7025 -0.2800 40 1 2.8949 -9.8203 -0.7121 41 1 6.3945 -5.9785 1.4804 42 1 5.0463 -5.8196 2.6320 43 1 5.3415 -4.2793 0.0126 44 1 5.6348 -3.6236 1.6412 45 1 1.2193 -2.4776 0.4040 46 1 1.7197 -2.6462 2.1075 47 1 3.0588 -0.3997 1.4669 48 1 1.4067 -0.3933 2.1163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:54 Heat of formation + Delta-G solvation = -70.936579 kcal Electronic energy + Delta-G solvation = -23864.014679 eV Core-core repulsion = 20724.530434 eV Total energy + Delta-G solvation = -3139.484245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23514 -38.19995 -35.95335 -33.37050 -32.33027 -32.02371 -29.70838 -29.33323 -27.73557 -25.76717 -24.35844 -23.39309 -21.84163 -21.35987 -19.94392 -19.19218 -18.29155 -16.69985 -16.32241 -16.15636 -15.57055 -15.09096 -14.71194 -14.44997 -13.95982 -13.56517 -13.31991 -13.03461 -12.90664 -12.69900 -12.55659 -12.20056 -12.15297 -11.96765 -11.69401 -11.39664 -11.32947 -11.20526 -11.06587 -10.93457 -10.72370 -10.51609 -10.36804 -10.27223 -10.10014 -9.96689 -9.94385 -9.80871 -9.28471 -8.92878 -8.63092 -8.29322 -7.72271 -5.95297 -4.01189 3.30445 3.38708 3.42843 3.97478 4.27660 4.46386 4.58732 4.68875 4.77134 5.02110 5.20688 5.27672 5.34115 5.43006 5.43994 5.48248 5.57658 5.62813 5.68879 5.80091 5.85304 5.90879 5.94221 5.99718 6.05362 6.10351 6.17959 6.23380 6.31034 6.36406 6.43071 6.46888 6.49337 6.68947 6.70502 6.84437 6.98871 7.16006 7.27002 7.49890 7.55178 7.58049 7.77787 7.78606 8.05841 8.19215 8.51364 9.03594 9.63415 11.10060 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038027 B = 0.003654 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.143573 B = 7661.684130 C = 7826.886776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.131 3.869 3 O -0.562 6.562 4 C -0.142 4.142 5 C -0.116 4.116 6 C 0.068 3.932 7 N -0.550 5.550 8 C 0.093 3.907 9 C -0.144 4.144 10 C -0.105 4.105 11 C 0.049 3.951 12 C -0.510 4.510 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.108 4.108 21 C -0.106 4.106 22 C 0.069 3.931 23 C -0.102 4.102 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.371 0.629 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.840 17.785 -1.155 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 O -0.368 6.368 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.062 4.062 7 N -0.273 5.273 8 C -0.014 4.014 9 C -0.183 4.183 10 C -0.143 4.143 11 C 0.030 3.970 12 C -0.549 4.549 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.716 3.284 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.146 4.146 21 C -0.144 4.144 22 C -0.058 4.058 23 C -0.140 4.140 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.217 0.783 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.041 0.959 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.358 17.794 -0.534 18.328 hybrid contribution -0.895 -1.375 -0.740 1.800 sum -5.252 16.419 -1.275 17.285 Atomic orbital electron populations 1.22588 0.96320 1.02716 1.02117 1.21734 0.91923 0.81923 0.95312 1.86566 1.76692 1.23067 1.50433 1.22112 0.98002 1.00847 0.96986 1.21454 0.95821 0.97013 1.01112 1.21041 1.01423 0.95403 0.88304 1.59112 1.28277 1.25282 1.14623 1.21789 0.96341 0.84705 0.98518 1.22235 0.97576 0.98532 0.99966 1.21546 1.01010 0.92720 0.99053 1.18652 0.90803 0.92352 0.95180 1.21299 1.25348 0.91321 1.16908 0.92766 1.24969 0.95223 0.98901 0.94974 1.69891 1.29268 1.30199 1.23712 0.86605 0.78024 0.84964 0.78815 1.19824 1.21145 1.21132 1.21628 0.99817 0.93425 0.99722 1.21623 0.94290 0.97724 1.00733 1.21715 0.89670 0.94074 1.00385 1.21339 1.03338 0.94437 0.94846 0.91541 0.91875 0.92704 0.78274 0.92327 0.91524 0.90455 0.91866 0.90578 0.95859 0.90740 0.94405 0.92676 0.89253 0.94950 0.95914 0.93244 0.93423 0.93448 0.92711 0.92916 0.94155 0.90635 0.89541 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.47 37.16 0.31 -1.27 16 2 C 0.13 1.35 0.83 -89.58 -0.07 1.28 16 3 O -0.56 -5.87 12.93 -35.23 -0.46 -6.33 16 4 C -0.14 -1.48 4.32 -27.25 -0.12 -1.59 16 5 C -0.12 -1.37 5.65 -27.10 -0.15 -1.52 16 6 C 0.07 0.95 4.05 -6.75 -0.03 0.92 16 7 N -0.55 -7.95 3.88 -231.98 -0.90 -8.85 16 8 C 0.09 1.57 2.13 -67.71 -0.14 1.42 16 9 C -0.14 -2.73 4.50 -26.73 -0.12 -2.85 16 10 C -0.10 -2.43 4.98 -26.73 -0.13 -2.56 16 11 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 12 C -0.51 -14.00 8.56 -34.44 -0.29 -14.30 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 16 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C -0.11 -2.23 5.15 -26.70 -0.14 -2.37 16 21 C -0.11 -1.87 5.11 -26.70 -0.14 -2.00 16 22 C 0.07 0.88 4.65 -4.51 -0.02 0.86 16 23 C -0.10 -1.19 4.46 -27.39 -0.12 -1.31 16 24 H 0.07 0.60 7.40 -51.93 -0.38 0.22 16 25 H 0.06 0.55 8.07 -51.92 -0.42 0.13 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.37 2.46 8.95 45.56 0.41 2.87 16 28 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 29 H 0.07 0.74 6.39 -51.93 -0.33 0.41 16 30 H 0.08 1.00 7.11 -51.93 -0.37 0.63 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.14 5.89 -51.93 -0.31 0.84 16 33 H 0.02 0.35 6.00 -51.92 -0.31 0.04 16 34 H 0.07 1.27 7.66 -51.93 -0.40 0.88 16 35 H 0.04 0.68 7.69 -51.93 -0.40 0.28 16 36 H 0.05 1.09 6.55 -51.93 -0.34 0.75 16 37 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.05 0.98 6.35 -51.93 -0.33 0.65 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.52 5.91 -51.93 -0.31 0.21 16 46 H 0.08 0.96 7.52 -51.93 -0.39 0.57 16 47 H 0.09 1.16 7.26 -51.93 -0.38 0.78 16 48 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 LS Contribution 343.09 15.07 5.17 5.17 Total: -1.00 -28.50 343.09 -9.93 -38.43 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.90 Total: 2.82 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.45 Total: -22.73 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.27 Total: -33.66 kcal Atomic # 8 Polarization: -5.87 SS G_CDS: -0.46 Total: -6.33 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.50 -9.93 -38.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.506 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds