Wall clock time and date at job start Tue Mar 31 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 108.96662 * 2 1 4 4 C 1.54161 * 108.97965 * 241.18831 * 2 1 3 5 5 C 1.50758 * 112.60917 * 197.93056 * 4 2 1 6 6 C 1.54433 * 109.02834 * 93.01589 * 5 4 2 7 7 N 1.39769 * 111.77215 * 282.59391 * 6 5 4 8 8 C 1.46901 * 111.00375 * 189.12574 * 7 6 5 9 9 C 1.53000 * 109.46769 * 306.04532 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53002 * 109.46963 * 299.99499 * 10 9 8 12 12 C 1.50703 * 109.47292 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99751 * 240.00190 * 12 11 10 14 14 C 1.37880 * 119.99788 * 60.00122 * 12 11 10 15 15 N 1.31510 * 119.99893 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99568 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47545 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46892 * 120.00078 * 16 14 12 19 19 H 1.48496 * 109.47356 * 239.99680 * 16 14 12 20 20 C 1.52997 * 109.47092 * 60.00194 * 11 10 9 21 21 C 1.53002 * 109.46860 * 66.04292 * 8 7 6 22 22 C 1.47635 * 114.76211 * 62.27115 * 7 6 5 23 23 C 1.50823 * 108.05040 * 277.20461 * 22 7 6 24 24 H 1.08994 * 109.47166 * 178.81435 * 1 2 3 25 25 H 1.09009 * 109.46996 * 298.81303 * 1 2 3 26 26 H 1.08996 * 109.47316 * 58.80961 * 1 2 3 27 27 H 0.96705 * 113.99495 * 301.19062 * 3 2 1 28 28 H 1.08994 * 108.85963 * 77.12349 * 4 2 1 29 29 H 1.09003 * 108.85943 * 318.73511 * 4 2 1 30 30 H 1.08990 * 109.54475 * 333.15378 * 5 4 2 31 31 H 1.09005 * 109.61866 * 212.92164 * 5 4 2 32 32 H 1.09001 * 109.02110 * 161.99780 * 6 5 4 33 33 H 1.09009 * 109.01720 * 43.18044 * 6 5 4 34 34 H 1.09002 * 109.47401 * 186.04239 * 8 7 6 35 35 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 36 36 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 37 37 H 1.09000 * 109.47437 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 39 39 H 1.09002 * 109.47067 * 300.00341 * 11 10 9 40 40 H 0.96996 * 119.99480 * 180.02562 * 15 14 12 41 41 H 1.09001 * 109.47375 * 180.02562 * 20 11 10 42 42 H 1.09002 * 109.47497 * 59.99850 * 20 11 10 43 43 H 1.09002 * 109.47075 * 299.99593 * 21 8 7 44 44 H 1.08996 * 109.47407 * 60.00550 * 21 8 7 45 45 H 1.09003 * 109.74142 * 36.83623 * 22 7 6 46 46 H 1.09001 * 109.74718 * 157.56292 * 22 7 6 47 47 H 1.08999 * 109.05110 * 334.49946 * 23 22 7 48 48 H 1.08999 * 108.98907 * 215.56370 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9945 1.3514 0.0000 4 6 2.0314 -0.7026 -1.2773 5 6 3.4720 -1.1346 -1.1737 6 6 3.5252 -2.5934 -0.6697 7 7 3.2987 -2.6747 0.7071 8 6 3.5648 -4.0308 1.2053 9 6 2.7520 -5.0410 0.3930 10 6 3.0286 -6.4534 0.9122 11 6 4.5195 -6.7662 0.7699 12 6 4.7919 -8.1576 1.2807 13 1 5.4762 -8.3066 2.1028 14 6 4.1674 -9.2403 0.6985 15 7 3.3345 -9.0587 -0.3028 16 14 4.5056 -10.9649 1.3313 17 1 5.4733 -10.8988 2.4557 18 1 3.2377 -11.5757 1.8053 19 1 5.0741 -11.7913 0.2363 20 6 5.3323 -5.7560 1.5821 21 6 5.0557 -4.3432 1.0625 22 6 1.9703 -2.2017 1.1443 23 6 2.0287 -0.7003 1.2755 24 1 -0.3633 -1.0274 -0.0213 25 1 -0.3633 0.4953 0.9005 26 1 -0.3634 0.5322 -0.8791 27 1 1.6896 1.8720 -0.7558 28 1 1.9286 -0.0181 -2.1193 29 1 1.4128 -1.5808 -1.4624 30 1 3.9973 -0.4870 -0.4719 31 1 3.9449 -1.0699 -2.1538 32 1 4.5069 -3.0110 -0.8936 33 1 2.7654 -3.1768 -1.1898 34 1 3.2790 -4.0949 2.2552 35 1 1.6898 -4.8185 0.4946 36 1 3.0377 -4.9770 -0.6569 37 1 2.4499 -7.1732 0.3332 38 1 2.7425 -6.5171 1.9621 39 1 4.8055 -6.7025 -0.2800 40 1 2.8949 -9.8203 -0.7121 41 1 6.3945 -5.9785 1.4804 42 1 5.0463 -5.8196 2.6320 43 1 5.3415 -4.2793 0.0126 44 1 5.6348 -3.6236 1.6412 45 1 1.2193 -2.4776 0.4040 46 1 1.7197 -2.6462 2.1075 47 1 3.0588 -0.3997 1.4669 48 1 1.4067 -0.3933 2.1163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331529.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:53 Heat of formation + Delta-G solvation = -88.411084 kcal Electronic energy + Delta-G solvation = -23864.772430 eV Core-core repulsion = 20724.530434 eV Total energy + Delta-G solvation = -3140.241996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.36147 -39.37613 -37.31803 -34.86703 -33.54062 -33.28334 -31.36875 -30.71252 -28.91980 -27.00507 -25.96776 -24.45112 -23.35770 -22.76659 -21.45875 -20.11088 -19.83320 -18.39229 -17.61489 -17.17063 -16.70587 -16.49112 -16.11926 -15.64789 -15.08764 -14.99280 -14.91762 -14.55434 -14.06499 -13.97760 -13.67939 -13.60923 -13.21779 -12.95836 -12.93284 -12.90356 -12.82707 -12.65330 -12.41859 -12.27334 -12.11192 -11.99012 -11.91135 -11.76964 -11.56875 -11.42369 -11.11278 -10.99747 -10.74117 -10.67237 -10.52872 -10.36068 -8.99084 -8.06778 -6.20971 1.38952 1.41159 1.52362 2.43570 2.94945 3.19218 3.37079 3.77674 3.80000 3.91988 3.96635 4.08367 4.17317 4.24489 4.38872 4.47132 4.54626 4.58753 4.62808 4.66884 4.73386 4.73989 4.81558 4.81819 4.88719 4.93757 4.98592 5.01530 5.07455 5.13570 5.16706 5.26208 5.29921 5.33235 5.38133 5.38418 5.43671 5.46946 5.50018 5.62397 5.69368 6.04677 6.21450 6.27749 6.43210 6.59753 6.92327 6.97225 7.47133 8.96698 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038027 B = 0.003654 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.143573 B = 7661.684130 C = 7826.886776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.134 3.866 3 O -0.576 6.576 4 C -0.140 4.140 5 C -0.107 4.107 6 C 0.067 3.933 7 N -0.545 5.545 8 C 0.102 3.898 9 C -0.130 4.130 10 C -0.096 4.096 11 C 0.046 3.954 12 C -0.533 4.533 13 H 0.050 0.950 14 C 0.011 3.989 15 N -0.917 5.917 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.282 1.282 20 C -0.100 4.100 21 C -0.097 4.097 22 C 0.069 3.931 23 C -0.098 4.098 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.388 0.612 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.012 0.988 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.027 0.973 39 H -0.011 1.011 40 H 0.259 0.741 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 19.317 -0.773 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.094 3.906 3 O -0.384 6.384 4 C -0.178 4.178 5 C -0.145 4.145 6 C -0.062 4.062 7 N -0.268 5.268 8 C -0.005 4.005 9 C -0.169 4.169 10 C -0.135 4.135 11 C 0.028 3.972 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.557 5.557 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.208 1.208 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.058 4.058 23 C -0.136 4.136 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.237 0.763 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.030 0.970 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.007 0.993 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.804 19.350 -0.158 19.938 hybrid contribution -0.747 -1.843 -0.891 2.180 sum -5.551 17.506 -1.050 18.395 Atomic orbital electron populations 1.22536 0.95024 1.02781 1.02998 1.21639 0.92797 0.81895 0.94310 1.86526 1.77060 1.23104 1.51687 1.22096 0.96684 1.01070 0.97962 1.21376 0.96996 0.94898 1.01251 1.21067 1.00291 0.96963 0.87920 1.59141 1.29598 1.23177 1.14863 1.21610 0.95233 0.85416 0.98261 1.22070 0.98767 0.96612 0.99480 1.21328 0.99469 0.94526 0.98176 1.18621 0.92333 0.92643 0.93638 1.21681 1.25394 0.93070 1.16977 0.93133 1.25733 0.95046 1.02704 0.95196 1.70034 1.29903 1.31175 1.24622 0.85612 0.78011 0.80311 0.78370 1.19162 1.20649 1.20762 1.21492 0.98934 0.94254 0.99155 1.21516 0.95279 0.96055 1.00640 1.21778 0.88575 0.94978 1.00430 1.21266 1.02606 0.93529 0.96207 0.91890 0.91731 0.91128 0.76302 0.90324 0.92180 0.91273 0.90771 0.91839 0.97026 0.90405 0.93244 0.93770 0.92794 0.95398 0.99303 0.93234 0.93607 0.93211 0.93099 0.90922 0.93998 0.90403 0.91180 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.47 71.98 0.61 -2.02 16 2 C 0.13 2.43 0.83 -10.12 -0.01 2.42 16 3 O -0.58 -10.49 12.93 -148.98 -1.93 -12.42 16 4 C -0.14 -2.60 4.32 30.26 0.13 -2.46 16 5 C -0.11 -2.35 5.65 30.35 0.17 -2.17 16 6 C 0.07 1.83 4.05 88.07 0.36 2.18 16 7 N -0.55 -15.10 3.88 -887.84 -3.44 -18.55 16 8 C 0.10 3.36 2.13 44.92 0.10 3.45 16 9 C -0.13 -4.96 4.50 30.59 0.14 -4.82 16 10 C -0.10 -4.58 4.98 30.60 0.15 -4.43 16 11 C 0.05 2.33 2.10 -11.54 -0.02 2.31 16 12 C -0.53 -29.86 8.56 25.60 0.22 -29.64 16 13 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.64 5.30 84.66 0.45 1.09 16 15 N -0.92 -53.72 11.32 21.45 0.24 -53.47 16 16 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 C -0.10 -4.15 5.15 30.61 0.16 -4.00 16 21 C -0.10 -3.35 5.11 30.61 0.16 -3.20 16 22 C 0.07 1.65 4.65 85.45 0.40 2.05 16 23 C -0.10 -2.10 4.46 30.16 0.13 -1.97 16 24 H 0.06 0.99 7.40 -2.39 -0.02 0.97 16 25 H 0.06 0.95 8.07 -2.38 -0.02 0.94 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.39 3.96 8.95 -74.05 -0.66 3.30 16 28 H 0.08 1.16 8.06 -2.39 -0.02 1.14 16 29 H 0.06 1.21 6.39 -2.39 -0.02 1.20 16 30 H 0.07 1.66 7.11 -2.39 -0.02 1.64 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.06 1.88 5.89 -2.39 -0.01 1.87 16 33 H 0.01 0.35 6.00 -2.38 -0.01 0.34 16 34 H 0.08 2.54 7.66 -2.39 -0.02 2.52 16 35 H 0.05 1.75 7.69 -2.39 -0.02 1.73 16 36 H 0.04 1.77 6.55 -2.39 -0.02 1.76 16 37 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.05 1.80 6.35 -2.39 -0.02 1.79 16 44 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.04 1.00 5.91 -2.39 -0.01 0.99 16 46 H 0.08 1.83 7.52 -2.39 -0.02 1.82 16 47 H 0.07 1.76 7.26 -2.39 -0.02 1.74 16 48 H 0.07 1.44 7.92 -2.39 -0.02 1.42 16 Total: -1.00 -61.83 343.09 0.30 -61.53 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.26 Total: 17.92 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.14 Total: -41.21 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -3.20 Total: -72.02 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -1.93 Total: -12.42 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -61.83 0.30 -61.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331529.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.879 kcal (2) G-P(sol) polarization free energy of solvation -61.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds