Wall clock time and date at job start Tue Mar 31 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 108.91935 * 2 1 4 4 C 1.45876 * 108.94243 * 118.62709 * 2 1 3 5 5 C 1.54308 * 112.19202 * 181.81563 * 4 2 1 6 6 C 1.50441 * 108.49562 * 281.44599 * 5 4 2 7 7 N 1.48001 * 112.82044 * 93.73262 * 6 5 4 8 8 C 1.46895 * 111.00313 * 191.34770 * 7 6 5 9 9 C 1.53000 * 109.47324 * 311.69120 * 8 7 6 10 10 C 1.52995 * 109.47410 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47451 * 59.99401 * 10 9 8 12 12 C 1.50694 * 109.47104 * 60.00265 * 11 10 9 13 13 H 1.08001 * 119.99896 * 239.99811 * 12 11 10 14 14 C 1.37875 * 120.00202 * 60.00421 * 12 11 10 15 15 N 1.31520 * 119.99867 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00298 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46921 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47430 * 119.99251 * 16 14 12 19 19 H 1.48501 * 109.46894 * 239.99650 * 16 14 12 20 20 C 1.53002 * 109.47057 * 300.00174 * 11 10 9 21 21 C 1.52998 * 109.47353 * 191.68634 * 8 7 6 22 22 C 1.47999 * 114.62970 * 318.09918 * 7 6 5 23 23 C 1.50450 * 112.83270 * 318.08265 * 22 7 6 24 24 H 1.09005 * 109.46611 * 178.70861 * 1 2 3 25 25 H 1.09002 * 109.47256 * 298.70865 * 1 2 3 26 26 H 1.09001 * 109.47360 * 58.71126 * 1 2 3 27 27 H 0.96697 * 113.99524 * 61.28912 * 3 2 1 28 28 H 1.08998 * 108.93443 * 302.51202 * 4 2 1 29 29 H 1.08998 * 108.93990 * 61.11419 * 4 2 1 30 30 H 1.08998 * 109.63322 * 41.15632 * 5 4 2 31 31 H 1.09002 * 109.63185 * 161.54419 * 5 4 2 32 32 H 1.08997 * 108.81890 * 214.60236 * 6 5 4 33 33 H 1.09001 * 108.81103 * 332.98690 * 6 5 4 34 34 H 1.09006 * 109.47069 * 71.68402 * 8 7 6 35 35 H 1.09006 * 109.46461 * 299.99654 * 9 8 7 36 36 H 1.08996 * 109.47633 * 59.99292 * 9 8 7 37 37 H 1.09006 * 109.46884 * 299.99222 * 10 9 8 38 38 H 1.08996 * 109.47424 * 179.97438 * 10 9 8 39 39 H 1.09000 * 109.47205 * 180.02562 * 11 10 9 40 40 H 0.97000 * 119.99630 * 180.02562 * 15 14 12 41 41 H 1.09006 * 109.46984 * 300.00000 * 20 11 10 42 42 H 1.09004 * 109.47109 * 180.02562 * 20 11 10 43 43 H 1.09006 * 109.47223 * 299.99798 * 21 8 7 44 44 H 1.08992 * 109.47177 * 60.00002 * 21 8 7 45 45 H 1.09006 * 108.81061 * 197.21968 * 22 7 6 46 46 H 1.09004 * 108.81469 * 78.94789 * 22 7 6 47 47 H 1.08997 * 109.63106 * 334.02075 * 23 22 7 48 48 H 1.09004 * 109.63195 * 213.43074 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9933 1.3519 0.0000 4 6 2.0035 -0.6611 1.2111 5 6 3.5435 -0.6633 1.3098 6 6 4.0776 -1.7455 0.4116 7 7 4.4316 -1.2494 -0.9371 8 6 4.6897 -2.3648 -1.8575 9 6 5.6389 -3.3645 -1.1938 10 6 5.9082 -4.5259 -2.1526 11 6 6.5470 -3.9906 -3.4356 12 6 7.8460 -3.3038 -3.1013 13 1 7.9811 -2.2588 -3.3385 14 6 8.8622 -4.0094 -2.4927 15 7 8.6977 -5.2819 -2.2035 16 14 10.4723 -3.1580 -2.0776 17 1 10.4043 -1.7365 -2.5021 18 1 10.7053 -3.2268 -0.6126 19 1 11.5872 -3.8337 -2.7885 20 6 5.5977 -2.9909 -4.0993 21 6 5.3283 -1.8299 -3.1408 22 6 3.4601 -0.2961 -1.5183 23 6 2.0309 -0.7011 -1.2802 24 1 -0.3633 -1.0275 -0.0232 25 1 -0.3634 0.4936 0.9013 26 1 -0.3634 0.5337 -0.8782 27 1 1.7194 1.8614 0.7748 28 1 1.5942 -0.1444 2.0792 29 1 1.6473 -1.6912 1.2142 30 1 3.9324 0.3034 0.9899 31 1 3.8442 -0.8564 2.3396 32 1 4.9663 -2.1776 0.8717 33 1 3.3211 -2.5238 0.3107 34 1 3.7499 -2.8615 -2.0989 35 1 6.5787 -2.8678 -0.9523 36 1 5.1841 -3.7456 -0.2795 37 1 4.9686 -5.0228 -2.3944 38 1 6.5848 -5.2379 -1.6800 39 1 6.7385 -4.8180 -4.1189 40 1 9.4125 -5.7782 -1.7750 41 1 4.6581 -3.4878 -4.3411 42 1 6.0526 -2.6098 -5.0136 43 1 4.6519 -1.1177 -3.6137 44 1 6.2679 -1.3332 -2.8994 45 1 3.6324 -0.2298 -2.5926 46 1 3.6250 0.6868 -1.0768 47 1 1.9730 -1.7820 -1.1524 48 1 1.4177 -0.3965 -2.1284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:56 Heat of formation + Delta-G solvation = -63.614119 kcal Electronic energy + Delta-G solvation = -24321.134769 eV Core-core repulsion = 21181.968050 eV Total energy + Delta-G solvation = -3139.166719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25120 -38.06302 -35.67469 -33.23631 -32.15897 -31.89937 -29.92326 -29.12049 -27.47558 -25.58538 -24.48428 -23.67436 -21.14821 -20.97698 -20.37178 -19.09777 -18.45426 -16.52556 -16.20698 -15.74441 -15.50408 -14.94252 -14.70169 -14.44023 -13.75441 -13.66953 -13.15125 -12.83260 -12.81511 -12.73336 -12.45936 -12.09862 -11.98432 -11.91663 -11.63633 -11.37727 -11.15532 -11.10748 -10.90763 -10.83721 -10.64520 -10.47714 -10.39454 -10.17339 -10.03944 -9.93968 -9.90864 -9.50104 -9.07282 -8.71133 -8.50645 -8.18175 -7.60594 -5.87482 -3.90601 3.36605 3.44931 3.49811 4.03735 4.26214 4.51510 4.53881 4.70103 4.89452 5.05739 5.18268 5.34610 5.43452 5.47503 5.49101 5.57889 5.67884 5.71106 5.75060 5.79389 5.89962 5.93170 5.99220 6.05900 6.14076 6.18214 6.32355 6.39198 6.43628 6.54371 6.61902 6.64334 6.70337 6.82584 6.86203 6.93452 7.22857 7.33280 7.52462 7.56773 7.62195 7.73427 7.82789 7.86303 8.04004 8.25473 8.59451 9.11815 9.72272 11.18629 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027243 B = 0.004565 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.546144 B = 6132.425074 C = 6389.893912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.135 3.865 3 O -0.555 6.555 4 C -0.147 4.147 5 C -0.118 4.118 6 C 0.064 3.936 7 N -0.542 5.542 8 C 0.098 3.902 9 C -0.094 4.094 10 C -0.107 4.107 11 C 0.043 3.957 12 C -0.494 4.494 13 H 0.056 0.944 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.883 3.117 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.287 1.287 20 C -0.106 4.106 21 C -0.097 4.097 22 C 0.051 3.949 23 C -0.130 4.130 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.369 0.631 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.020 0.980 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.009 0.991 38 H 0.091 0.909 39 H 0.022 0.978 40 H 0.256 0.744 41 H 0.029 0.971 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 9.180 6.506 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.095 3.905 3 O -0.361 6.361 4 C -0.185 4.185 5 C -0.156 4.156 6 C -0.063 4.063 7 N -0.267 5.267 8 C -0.009 4.009 9 C -0.132 4.132 10 C -0.145 4.145 11 C 0.025 3.975 12 C -0.532 4.532 13 H 0.074 0.926 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.712 3.288 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.214 1.214 20 C -0.144 4.144 21 C -0.134 4.134 22 C -0.076 4.076 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.216 0.784 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.109 0.891 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.665 9.091 6.083 18.295 hybrid contribution -0.282 -0.016 0.799 0.847 sum -14.947 9.075 6.882 18.791 Atomic orbital electron populations 1.22597 0.96439 1.02485 1.02188 1.19942 0.91997 0.82894 0.95692 1.86573 1.78054 1.23317 1.48158 1.21328 0.97714 1.01757 0.97680 1.21370 0.93583 1.01340 0.99264 1.21720 0.99411 0.95617 0.89545 1.61925 1.44926 1.18004 1.01834 1.21609 0.96438 0.90128 0.92723 1.21499 0.99056 0.96081 0.96556 1.21513 0.97248 0.97213 0.98536 1.18692 0.92713 0.93446 0.92647 1.21192 0.97827 0.96376 1.37840 0.92570 1.24924 0.98208 0.94764 0.96107 1.69886 1.32565 1.07750 1.43160 0.86666 0.84282 0.79909 0.77955 1.19798 1.21222 1.21351 1.21551 0.98175 0.97098 0.97623 1.21493 1.00542 0.97389 0.94008 1.21888 0.87801 0.97644 1.00278 1.21918 0.99473 0.99754 0.95756 0.91873 0.92665 0.91857 0.78367 0.92128 0.91429 0.89738 0.91587 0.90733 0.95716 0.96206 0.90324 0.95149 0.97183 0.89063 0.95972 0.93368 0.95207 0.93512 0.94579 0.90394 0.91137 0.89227 0.91068 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.59 37.16 0.32 -1.21 16 2 C 0.13 1.39 0.88 -93.30 -0.08 1.31 16 3 O -0.56 -5.80 10.11 -35.23 -0.36 -6.15 16 4 C -0.15 -1.47 4.07 -29.42 -0.12 -1.59 16 5 C -0.12 -1.41 5.59 -27.32 -0.15 -1.56 16 6 C 0.06 0.95 3.84 -4.50 -0.02 0.94 16 7 N -0.54 -9.04 4.58 -227.92 -1.04 -10.08 16 8 C 0.10 1.85 1.90 -67.72 -0.13 1.73 16 9 C -0.09 -2.01 4.36 -26.73 -0.12 -2.12 16 10 C -0.11 -2.53 5.24 -26.74 -0.14 -2.67 16 11 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 12 C -0.49 -13.31 6.61 -34.44 -0.23 -13.53 16 13 H 0.06 1.52 6.71 -52.49 -0.35 1.17 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 16 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C -0.11 -2.26 5.41 -26.75 -0.14 -2.40 16 21 C -0.10 -1.91 4.90 -26.76 -0.13 -2.04 16 22 C 0.05 0.75 4.93 -4.49 -0.02 0.73 16 23 C -0.13 -1.62 4.81 -27.32 -0.13 -1.75 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.37 2.51 8.99 45.56 0.41 2.92 16 28 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 29 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 30 H 0.08 1.10 6.37 -51.93 -0.33 0.77 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.20 6.88 -51.93 -0.36 0.84 16 33 H 0.02 0.37 6.47 -51.93 -0.34 0.03 16 34 H 0.02 0.38 7.69 -51.93 -0.40 -0.02 16 35 H 0.08 1.90 7.22 -51.93 -0.37 1.52 16 36 H 0.03 0.60 6.53 -51.93 -0.34 0.26 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 39 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.64 6.09 -51.93 -0.32 0.32 16 44 H 0.08 1.72 6.62 -51.93 -0.34 1.37 16 45 H 0.07 1.09 5.61 -51.93 -0.29 0.79 16 46 H 0.09 1.36 5.44 -51.93 -0.28 1.08 16 47 H 0.07 0.95 6.61 -51.93 -0.34 0.61 16 48 H 0.07 0.81 8.00 -51.93 -0.42 0.40 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -28.39 336.23 -9.87 -38.26 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.71 Total: 3.05 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.43 Total: -21.78 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.42 Total: -34.96 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.36 Total: -6.15 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.39 -9.87 -38.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.359 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds