Wall clock time and date at job start Tue Mar 31 2020 05:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00329 * 2 1 4 4 H 1.48501 * 109.47451 * 89.99862 * 3 2 1 5 5 H 1.48497 * 109.47281 * 209.99969 * 3 2 1 6 6 H 1.48508 * 109.47024 * 329.99931 * 3 2 1 7 7 C 1.37886 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99660 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47355 * 299.99583 * 9 7 2 11 11 C 1.52995 * 109.47281 * 300.00355 * 10 9 7 12 12 C 1.52998 * 109.46946 * 299.99828 * 11 10 9 13 13 N 1.46903 * 109.47040 * 179.97438 * 12 11 10 14 14 C 1.47635 * 110.99954 * 77.19856 * 13 12 11 15 15 C 1.50812 * 108.05424 * 150.34749 * 14 13 12 16 16 C 1.53828 * 111.62214 * 95.06086 * 15 14 13 17 17 C 1.54168 * 111.96820 * 319.04113 * 16 15 14 18 18 H 1.08998 * 108.85828 * 79.29509 * 17 16 15 19 19 C 1.52997 * 108.85459 * 197.68807 * 17 16 15 20 20 O 1.42902 * 109.46885 * 298.08175 * 19 17 16 21 21 C 1.50756 * 112.60778 * 318.48924 * 17 16 15 22 22 C 1.39774 * 111.00204 * 308.31143 * 13 12 11 23 23 C 1.52997 * 109.47463 * 60.00142 * 12 11 10 24 24 C 1.53003 * 109.47138 * 299.99881 * 23 12 11 25 25 H 0.96998 * 119.99809 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47753 * 60.00034 * 9 7 2 27 27 H 1.09005 * 109.47074 * 60.00571 * 10 9 7 28 28 H 1.09000 * 109.47161 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.47216 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47167 * 59.99827 * 11 10 9 31 31 H 1.09000 * 109.47196 * 299.99429 * 12 11 10 32 32 H 1.08998 * 109.74511 * 269.98846 * 14 13 12 33 33 H 1.09003 * 109.74537 * 30.70445 * 14 13 12 34 34 H 1.08997 * 109.04970 * 334.50251 * 15 14 13 35 35 H 1.09000 * 108.99205 * 215.56924 * 15 14 13 36 36 H 1.09000 * 108.97915 * 198.40247 * 16 15 14 37 37 H 1.08993 * 108.91744 * 79.63634 * 16 15 14 38 38 H 1.09001 * 109.47433 * 58.08683 * 19 17 16 39 39 H 1.09003 * 109.47363 * 178.09016 * 19 17 16 40 40 H 0.96701 * 114.00081 * 180.02562 * 20 19 17 41 41 H 1.08998 * 109.54694 * 333.15756 * 21 17 16 42 42 H 1.09002 * 109.61971 * 212.92649 * 21 17 16 43 43 H 1.09002 * 109.02073 * 309.70860 * 22 13 12 44 44 H 1.09001 * 109.02410 * 68.60728 * 22 13 12 45 45 H 1.08995 * 109.47567 * 179.97438 * 23 12 11 46 46 H 1.09000 * 109.47496 * 59.99471 * 23 12 11 47 47 H 1.09000 * 109.46592 * 300.00144 * 24 23 12 48 48 H 1.08998 * 109.47430 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4400 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3709 -2.5799 1.2495 11 6 1.2500 -2.4987 2.4990 12 6 2.2442 -3.6616 2.4996 13 7 3.0887 -3.5832 3.6990 14 6 2.3597 -4.0591 4.8914 15 6 3.3652 -4.6435 5.8516 16 6 3.8116 -3.6123 6.9021 17 6 4.0260 -2.2159 6.2848 18 1 3.0565 -1.7345 6.1570 19 6 4.8698 -1.3751 7.2449 20 8 4.1684 -1.2143 8.4795 21 6 4.7211 -2.2737 4.9482 22 6 3.6576 -2.3131 3.8290 23 6 3.1243 -3.5809 1.2507 24 6 2.2452 -3.6622 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 -0.3375 -1.7514 1.2491 28 1 -0.1738 -3.5241 1.2497 29 1 0.6230 -2.5558 3.3888 30 1 1.7951 -1.5547 2.4990 31 1 1.6992 -4.6056 2.4997 32 1 1.8416 -3.2244 5.3636 33 1 1.6393 -4.8241 4.6016 34 1 4.2371 -4.9814 5.2916 35 1 2.9161 -5.4970 6.3595 36 1 4.7454 -3.9475 7.3535 37 1 3.0481 -3.5439 7.6769 38 1 5.8195 -1.8774 7.4292 39 1 5.0562 -0.3963 6.8029 40 1 4.6452 -0.6899 9.1373 41 1 5.3382 -3.1706 4.8966 42 1 5.3489 -1.3913 4.8238 43 1 4.1255 -2.0351 2.8846 44 1 2.8721 -1.5941 4.0613 45 1 3.8329 -4.4091 1.2513 46 1 3.6694 -2.6369 1.2506 47 1 1.7002 -4.6061 0.0012 48 1 2.8721 -3.6042 -0.8886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:11 Heat of formation + Delta-G solvation = -70.361255 kcal Electronic energy + Delta-G solvation = -24205.339451 eV Core-core repulsion = 21065.880154 eV Total energy + Delta-G solvation = -3139.459297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.91440 -37.79894 -36.35654 -34.06621 -32.23260 -31.95446 -29.55045 -28.86075 -26.85542 -25.48609 -24.36989 -23.11813 -21.89781 -21.15314 -19.77274 -19.05326 -18.33692 -17.37108 -15.96910 -15.71100 -15.44914 -14.96496 -14.61031 -14.30683 -14.18109 -13.75684 -13.61334 -13.16209 -13.08725 -12.70330 -12.22286 -12.01047 -11.84555 -11.70809 -11.40560 -11.24230 -10.99403 -10.94351 -10.83442 -10.67413 -10.54102 -10.45531 -10.26642 -10.17552 -10.09643 -9.97433 -9.85524 -9.61567 -9.07693 -8.87510 -8.59864 -8.25724 -7.53538 -5.93446 -3.97490 3.30143 3.37970 3.40361 4.13944 4.35193 4.46409 4.74466 4.85841 5.07265 5.24673 5.34063 5.36834 5.43580 5.45029 5.50815 5.61542 5.76671 5.81451 5.84356 5.89929 6.01433 6.09808 6.14420 6.17474 6.26309 6.29369 6.37915 6.39298 6.48947 6.55181 6.59559 6.62403 6.63575 6.82292 6.84031 6.93117 7.16007 7.24424 7.45829 7.49279 7.57712 7.71428 7.80214 7.94006 8.02120 8.20624 8.53363 9.05087 9.65316 11.12343 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.005517 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.126715 B = 5074.326111 C = 6028.191609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.881 3.119 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.288 1.288 7 C -0.498 4.498 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.104 4.104 11 C -0.128 4.128 12 C 0.096 3.904 13 N -0.549 5.549 14 C 0.065 3.935 15 C -0.117 4.117 16 C -0.101 4.101 17 C -0.088 4.088 18 H 0.073 0.927 19 C 0.078 3.922 20 O -0.573 6.573 21 C -0.113 4.113 22 C 0.071 3.929 23 C -0.096 4.096 24 C -0.107 4.107 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.374 0.626 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.026 0.974 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.032 0.968 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.297 -5.851 12.984 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.709 3.291 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.214 1.214 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.142 4.142 11 C -0.167 4.167 12 C -0.011 4.011 13 N -0.272 5.272 14 C -0.062 4.062 15 C -0.155 4.155 16 C -0.139 4.139 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.001 3.999 20 O -0.378 6.378 21 C -0.151 4.151 22 C -0.058 4.058 23 C -0.134 4.134 24 C -0.145 4.145 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.107 0.893 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.220 0.780 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.081 -6.379 12.622 16.289 hybrid contribution 0.207 1.984 0.480 2.051 sum 8.289 -4.396 13.102 16.115 Atomic orbital electron populations 1.69870 1.05808 1.26062 1.51320 1.24931 0.94725 0.98704 0.95600 0.86771 0.80047 0.84272 0.78002 1.20875 1.19983 1.21377 1.21141 0.92641 0.90435 1.49382 0.92779 1.18689 0.92708 0.92147 0.93949 1.21455 0.98664 0.99176 0.94951 1.21979 0.97678 0.99465 0.97545 1.21738 0.92553 0.98123 0.88683 1.59148 1.36470 1.28063 1.03539 1.21748 0.94904 0.98896 0.90682 1.21445 1.00102 0.97461 0.96473 1.21829 1.00865 0.93570 0.97623 1.21083 0.99754 0.95912 0.93921 0.90889 1.22473 0.94378 0.98416 0.84644 1.86514 1.48779 1.76562 1.25969 1.21512 0.98277 1.02183 0.93093 1.20972 0.95981 0.90001 0.98883 1.21450 0.97300 1.01067 0.93553 1.21552 0.98271 0.98505 0.96142 0.93240 0.95928 0.89332 0.96955 0.95463 0.90685 0.91700 0.94324 0.91477 0.90771 0.92516 0.92780 0.92258 0.93906 0.93779 0.77976 0.90765 0.91755 0.90165 0.95572 0.93895 0.91243 0.94898 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.50 -13.08 6.61 -34.44 -0.23 -13.31 16 8 H 0.05 1.42 6.71 -52.49 -0.35 1.06 16 9 C 0.04 1.06 2.59 -91.77 -0.24 0.82 16 10 C -0.10 -2.43 5.24 -26.73 -0.14 -2.57 16 11 C -0.13 -2.67 4.22 -26.73 -0.11 -2.78 16 12 C 0.10 1.74 2.14 -67.71 -0.14 1.60 16 13 N -0.55 -8.73 3.86 -231.99 -0.90 -9.63 16 14 C 0.06 0.93 4.82 -4.52 -0.02 0.91 16 15 C -0.12 -1.42 5.41 -27.40 -0.15 -1.57 16 16 C -0.10 -1.20 4.97 -25.69 -0.13 -1.33 16 17 C -0.09 -1.11 1.93 -91.14 -0.18 -1.28 16 18 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 19 C 0.08 0.84 6.17 37.16 0.23 1.07 16 20 O -0.57 -6.32 13.32 -35.23 -0.47 -6.79 16 21 C -0.11 -1.46 5.16 -27.10 -0.14 -1.60 16 22 C 0.07 1.14 3.98 -6.74 -0.03 1.11 16 23 C -0.10 -1.82 4.93 -26.73 -0.13 -1.95 16 24 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.03 0.54 7.79 -51.93 -0.40 0.14 16 30 H 0.07 1.74 5.62 -51.93 -0.29 1.45 16 31 H 0.06 1.17 7.60 -51.93 -0.39 0.77 16 32 H 0.04 0.59 6.66 -51.93 -0.35 0.25 16 33 H 0.07 0.95 7.49 -51.93 -0.39 0.56 16 34 H 0.07 0.94 7.26 -51.93 -0.38 0.57 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.60 7.94 -51.93 -0.41 0.18 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 39 H 0.04 0.45 7.96 -51.93 -0.41 0.04 16 40 H 0.37 2.34 9.12 45.56 0.42 2.76 16 41 H 0.07 0.94 7.11 -51.93 -0.37 0.57 16 42 H 0.06 0.77 7.61 -51.93 -0.40 0.37 16 43 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 44 H 0.03 0.47 6.00 -51.93 -0.31 0.16 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.42 4.89 -51.93 -0.25 1.16 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -28.22 340.02 -10.06 -38.27 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.78 Total: 3.21 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -1.64 Total: -21.67 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: -0.27 Total: -34.23 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.47 Total: -6.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.22 -10.06 -38.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.087 kcal (2) G-P(sol) polarization free energy of solvation -28.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds