Wall clock time and date at job start Tue Mar 31 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48499 * 109.46741 * 239.99791 * 3 2 1 5 5 H 1.48498 * 109.47212 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46772 * 120.00139 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47031 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46997 * 299.99573 * 11 10 9 13 13 N 1.46901 * 109.47211 * 179.97438 * 12 11 10 14 14 C 1.44375 * 110.95345 * 307.93578 * 13 12 11 15 15 C 1.54071 * 111.88811 * 219.37652 * 14 13 12 16 16 C 1.54288 * 112.28323 * 318.90406 * 15 14 13 17 17 C 1.50460 * 113.03442 * 318.30360 * 16 15 14 18 18 H 1.09002 * 109.57589 * 332.35801 * 17 16 15 19 19 C 1.52999 * 109.68166 * 212.03471 * 17 16 15 20 20 O 1.42894 * 109.47292 * 65.57831 * 19 17 16 21 21 C 1.54512 * 108.84415 * 92.16079 * 17 16 15 22 22 C 1.45866 * 111.59659 * 282.79807 * 21 17 16 23 23 C 1.52999 * 109.46881 * 60.00335 * 12 11 10 24 24 C 1.52996 * 109.47008 * 299.99632 * 9 7 2 25 25 H 0.97002 * 119.99541 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46824 * 59.99845 * 9 7 2 27 27 H 1.08999 * 109.47062 * 59.99605 * 10 9 7 28 28 H 1.09004 * 109.47251 * 299.99973 * 10 9 7 29 29 H 1.09004 * 109.47171 * 180.02562 * 11 10 9 30 30 H 1.08999 * 109.47687 * 59.99784 * 11 10 9 31 31 H 1.08999 * 109.47562 * 300.00381 * 12 11 10 32 32 H 1.09000 * 109.03021 * 98.75311 * 14 13 12 33 33 H 1.09004 * 108.95396 * 339.94243 * 14 13 12 34 34 H 1.08997 * 108.91709 * 198.18840 * 15 14 13 35 35 H 1.08990 * 108.91967 * 79.62910 * 15 14 13 36 36 H 1.09003 * 108.76856 * 197.38841 * 16 15 14 37 37 H 1.08993 * 108.68055 * 79.15973 * 16 15 14 38 38 H 1.09001 * 109.46662 * 185.57551 * 19 17 16 39 39 H 1.09001 * 109.47089 * 305.57450 * 19 17 16 40 40 H 0.96700 * 114.00477 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.04951 * 162.24999 * 21 17 16 42 42 H 1.09000 * 108.99535 * 43.30981 * 21 17 16 43 43 H 1.09003 * 108.78986 * 182.20973 * 22 21 17 44 44 H 1.08994 * 108.79240 * 300.54993 * 22 21 17 45 45 H 1.08997 * 109.47498 * 59.99618 * 23 12 11 46 46 H 1.08995 * 109.47324 * 180.02562 * 23 12 11 47 47 H 1.08999 * 109.47698 * 300.00305 * 24 9 7 48 48 H 1.09004 * 109.46757 * 60.00311 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 0.5994 -5.0679 1.2496 13 7 -0.1356 -6.3399 1.2487 14 6 -0.8312 -6.5334 -0.0016 15 6 -2.2242 -7.1577 0.2068 16 6 -2.2122 -8.2723 1.2736 17 6 -1.0124 -9.1742 1.1691 18 1 -0.6610 -9.1966 0.1376 19 6 -1.3909 -10.5888 1.6125 20 8 -2.3397 -11.1374 0.6957 21 6 0.1051 -8.6263 2.0848 22 6 0.7764 -7.4787 1.4848 23 6 -0.3949 -3.9050 1.2483 24 6 0.3710 -2.5799 1.2495 25 1 -0.4849 0.8401 0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 2.8713 -3.6039 0.8922 28 1 2.8727 -3.6047 -0.8877 29 1 2.1887 -5.8156 0.0026 30 1 0.8546 -5.0450 -0.8894 31 1 1.2250 -5.0100 2.1402 32 1 -0.2399 -7.1905 -0.6393 33 1 -0.9455 -5.5687 -0.4962 34 1 -2.5685 -7.5771 -0.7385 35 1 -2.9182 -6.3773 0.5188 36 1 -3.1141 -8.8741 1.1622 37 1 -2.2191 -7.8106 2.2609 38 1 -0.4989 -11.2148 1.6303 39 1 -1.8289 -10.5519 2.6100 40 1 -2.6257 -12.0347 0.9154 41 1 0.8372 -9.4139 2.2629 42 1 -0.3321 -8.3252 3.0368 43 1 1.5784 -7.1547 2.1481 44 1 1.2106 -7.7841 0.5329 45 1 -1.0206 -3.9629 0.3576 46 1 -1.0222 -3.9623 2.1378 47 1 0.9973 -2.5220 2.1397 48 1 -0.3373 -1.7514 1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332220.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:14 Heat of formation + Delta-G solvation = -74.116276 kcal Electronic energy + Delta-G solvation = -23605.996722 eV Core-core repulsion = 20466.374595 eV Total energy + Delta-G solvation = -3139.622127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.91419 -37.85314 -36.32407 -34.08516 -32.43036 -32.13849 -29.82012 -29.05122 -27.06265 -25.67808 -24.07974 -23.05892 -21.91926 -20.91580 -20.01210 -19.40105 -18.13322 -17.48121 -16.29905 -15.94412 -15.72969 -14.75730 -14.57201 -14.49022 -14.33837 -13.86024 -13.62487 -13.25494 -12.79932 -12.72575 -12.50670 -12.19341 -12.10397 -11.81763 -11.48074 -11.25625 -11.04773 -10.95159 -10.76439 -10.65527 -10.57272 -10.52653 -10.36970 -10.18454 -10.15969 -10.09667 -10.01406 -9.67843 -9.30836 -8.85428 -8.68124 -8.24615 -7.87048 -5.93363 -3.99534 3.34055 3.38841 3.41360 3.98888 4.14338 4.47477 4.78676 4.80131 4.94489 5.17811 5.24823 5.34299 5.35832 5.38814 5.43959 5.47341 5.51694 5.64135 5.66790 5.79734 5.88589 5.92165 6.04123 6.14029 6.16916 6.19837 6.27893 6.33860 6.37292 6.43581 6.46484 6.51591 6.58133 6.64404 6.77929 6.82831 6.94602 7.16562 7.32077 7.41071 7.47209 7.55799 7.61599 7.80416 8.07638 8.22474 8.52660 9.04399 9.64788 11.12017 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.044858 B = 0.003445 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.046377 B = 8125.603467 C = 8399.329241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.050 3.950 10 C -0.104 4.104 11 C -0.145 4.145 12 C 0.089 3.911 13 N -0.522 5.522 14 C 0.050 3.950 15 C -0.107 4.107 16 C -0.100 4.100 17 C -0.083 4.083 18 H 0.073 0.927 19 C 0.081 3.919 20 O -0.572 6.572 21 C -0.105 4.105 22 C 0.054 3.946 23 C -0.104 4.104 24 C -0.108 4.108 25 H 0.259 0.741 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.044 0.956 40 H 0.375 0.625 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.052 0.948 46 H 0.049 0.951 47 H 0.032 0.968 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.869 -19.873 3.845 20.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.031 3.969 10 C -0.143 4.143 11 C -0.184 4.184 12 C -0.019 4.019 13 N -0.245 5.245 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.137 4.137 17 C -0.101 4.101 18 H 0.091 0.909 19 C 0.003 3.997 20 O -0.377 6.377 21 C -0.143 4.143 22 C -0.073 4.073 23 C -0.142 4.142 24 C -0.147 4.147 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.222 0.778 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.051 0.949 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.298 -19.139 3.961 19.821 hybrid contribution 1.087 0.323 -0.382 1.197 sum -2.211 -18.816 3.579 19.281 Atomic orbital electron populations 1.69871 1.05804 1.26341 1.50896 1.24961 0.94831 0.98916 0.95264 0.86723 0.79650 0.83466 0.78519 1.20416 1.21349 1.20368 1.21205 0.92789 0.90870 1.50309 0.92980 1.18637 0.92569 0.91352 0.94298 1.21568 0.98583 0.94209 0.99890 1.22252 0.98785 0.98630 0.98732 1.21903 0.94357 0.88256 0.97341 1.61934 1.27228 1.01665 1.33656 1.21991 0.94778 1.00438 0.90695 1.21907 0.96912 0.97462 0.98250 1.21157 0.96852 0.95725 1.00014 1.20933 0.96519 0.92364 1.00320 0.90870 1.22267 0.90960 0.94685 0.91773 1.86506 1.63163 1.34527 1.53540 1.20593 0.97368 0.96890 0.99462 1.20932 0.94788 0.91779 0.99833 1.21667 0.97188 0.94882 1.00488 1.21616 0.99564 0.94910 0.98569 0.93062 0.95929 0.93529 0.93779 0.94006 0.92462 0.90759 0.94820 0.90807 0.92730 0.92033 0.92487 0.91822 0.94028 0.93754 0.77849 0.92086 0.91101 0.91538 0.94833 0.92960 0.93257 0.94893 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.32 55.43 0.63 -24.88 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.17 8.56 -34.44 -0.29 -14.46 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.23 2.10 -91.77 -0.19 1.04 16 10 C -0.10 -2.17 5.14 -26.73 -0.14 -2.31 16 11 C -0.14 -2.55 4.64 -26.73 -0.12 -2.67 16 12 C 0.09 1.51 2.12 -67.71 -0.14 1.37 16 13 N -0.52 -7.64 4.19 -231.46 -0.97 -8.60 16 14 C 0.05 0.72 3.72 -4.62 -0.02 0.70 16 15 C -0.11 -1.40 6.14 -25.50 -0.16 -1.55 16 16 C -0.10 -1.20 4.93 -27.33 -0.13 -1.33 16 17 C -0.08 -0.90 2.10 -91.09 -0.19 -1.09 16 18 H 0.07 0.90 7.15 -51.93 -0.37 0.53 16 19 C 0.08 0.72 6.30 37.16 0.23 0.96 16 20 O -0.57 -5.47 12.95 -35.23 -0.46 -5.92 16 21 C -0.11 -1.10 4.92 -29.31 -0.14 -1.24 16 22 C 0.05 0.68 4.17 -6.71 -0.03 0.65 16 23 C -0.10 -2.03 5.19 -26.70 -0.14 -2.17 16 24 C -0.11 -2.53 4.98 -26.71 -0.13 -2.66 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.04 0.67 7.31 -51.93 -0.38 0.29 16 30 H 0.06 1.03 6.44 -51.93 -0.33 0.70 16 31 H 0.07 1.29 7.79 -51.93 -0.40 0.88 16 32 H 0.03 0.48 6.51 -51.93 -0.34 0.14 16 33 H 0.07 1.19 4.89 -51.93 -0.25 0.94 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.69 7.19 -51.93 -0.37 0.31 16 37 H 0.06 0.80 7.38 -51.93 -0.38 0.42 16 38 H 0.04 0.32 8.06 -51.93 -0.42 -0.10 16 39 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.38 1.80 9.12 45.56 0.42 2.21 16 41 H 0.06 0.53 7.96 -51.93 -0.41 0.12 16 42 H 0.07 0.76 7.58 -51.93 -0.39 0.37 16 43 H 0.07 0.82 7.58 -51.93 -0.39 0.43 16 44 H 0.03 0.43 6.94 -51.93 -0.36 0.07 16 45 H 0.05 1.05 6.47 -51.93 -0.34 0.71 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -29.04 345.23 -10.29 -39.33 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.98 Total: 1.64 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.70 Total: -23.17 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: -0.34 Total: -33.48 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.46 Total: -5.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.04 -10.29 -39.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332220.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.789 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds