Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42894 * 109.52503 * 64.99833 * 3 2 1 5 5 C 1.53113 * 109.51882 * 304.87115 * 3 2 1 6 6 C 1.53053 * 109.27320 * 182.50367 * 5 3 2 7 7 N 1.46852 * 109.57298 * 59.08646 * 6 5 3 8 8 C 1.46900 * 110.99622 * 174.19189 * 7 6 5 9 9 C 1.53001 * 109.47087 * 59.20987 * 8 7 6 10 10 C 1.53000 * 109.46888 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47139 * 59.99856 * 10 9 8 12 12 C 1.50704 * 109.47037 * 59.99937 * 11 10 9 13 13 H 1.07990 * 119.99794 * 239.99996 * 12 11 10 14 14 C 1.37877 * 119.99900 * 59.99609 * 12 11 10 15 15 N 1.31522 * 120.00159 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00018 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46828 * 90.00157 * 16 14 12 18 18 H 1.48495 * 109.47404 * 210.00565 * 16 14 12 19 19 H 1.48506 * 109.47030 * 330.00393 * 16 14 12 20 20 C 1.52996 * 109.47031 * 299.99776 * 11 10 9 21 21 C 1.52993 * 109.47393 * 299.20645 * 8 7 6 22 22 C 1.46841 * 111.19607 * 298.28810 * 7 6 5 23 23 C 1.53043 * 109.52659 * 61.74451 * 22 7 6 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 27 27 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 28 28 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 29 29 H 0.96708 * 114.00032 * 299.99908 * 4 3 2 30 30 H 1.09005 * 109.50852 * 302.38145 * 5 3 2 31 31 H 1.08998 * 109.50683 * 62.50303 * 5 3 2 32 32 H 1.08994 * 109.40973 * 299.06886 * 6 5 3 33 33 H 1.09001 * 109.45958 * 179.13145 * 6 5 3 34 34 H 1.09001 * 109.46800 * 179.20562 * 8 7 6 35 35 H 1.09001 * 109.46953 * 299.99480 * 9 8 7 36 36 H 1.08999 * 109.46915 * 59.99600 * 9 8 7 37 37 H 1.09001 * 109.47151 * 299.99667 * 10 9 8 38 38 H 1.08999 * 109.47255 * 179.97438 * 10 9 8 39 39 H 1.08998 * 109.46871 * 179.97438 * 11 10 9 40 40 H 0.97000 * 119.99768 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.47529 * 299.99793 * 20 11 10 42 42 H 1.09006 * 109.46991 * 179.97438 * 20 11 10 43 43 H 1.09004 * 109.47445 * 300.00618 * 21 8 7 44 44 H 1.09001 * 109.47216 * 60.00171 * 21 8 7 45 45 H 1.08998 * 109.46439 * 301.72737 * 22 7 6 46 46 H 1.09002 * 109.45574 * 181.75591 * 22 7 6 47 47 H 1.08996 * 109.50575 * 180.87951 * 23 22 7 48 48 H 1.09005 * 109.50077 * 60.75822 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6625 2.0826 1.2206 5 6 1.4326 2.1999 -1.1840 6 6 1.9945 3.6232 -1.2151 7 7 3.4568 3.5723 -1.3401 8 6 4.0176 4.9192 -1.5113 9 6 3.6419 5.7849 -0.3070 10 6 4.2267 7.1875 -0.4851 11 6 3.6636 7.8166 -1.7610 12 6 2.1629 7.9075 -1.6564 13 1 1.5396 7.3987 -2.3766 14 6 1.5859 8.6403 -0.6409 15 7 2.3450 9.2603 0.2360 16 14 -0.2742 8.7535 -0.5115 17 1 -0.7797 7.6449 0.3372 18 1 -0.6498 10.0545 0.0980 19 1 -0.8719 8.6512 -1.8672 20 6 4.0393 6.9509 -2.9652 21 6 3.4541 5.5480 -2.7871 22 6 4.0645 2.8914 -0.1898 23 6 3.5658 1.4458 -0.1289 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5137 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 0.7073 2.1182 1.3670 30 1 1.6874 1.6887 -2.1124 31 1 0.3488 2.2379 -1.0744 32 1 1.7265 4.1386 -0.2929 33 1 1.5757 4.1604 -2.0661 34 1 5.1030 4.8538 -1.5872 35 1 2.5565 5.8504 -0.2311 36 1 4.0434 5.3369 0.6019 37 1 5.3120 7.1218 -0.5607 38 1 3.9586 7.8045 0.3726 39 1 4.0798 8.8160 -1.8876 40 1 1.9389 9.7761 0.9502 41 1 5.1247 6.8851 -3.0410 42 1 3.6378 7.3988 -3.8742 43 1 3.7217 4.9311 -3.6451 44 1 2.3687 5.6134 -2.7112 45 1 3.7869 3.4103 0.7277 46 1 5.1493 2.8971 -0.2961 47 1 4.0050 0.9453 0.7340 48 1 3.8551 0.9224 -1.0402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173337563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = -74.162678 kcal Electronic energy + Delta-G solvation = -24459.946997 eV Core-core repulsion = 21320.322858 eV Total energy + Delta-G solvation = -3139.624139 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97031 -38.03475 -35.42272 -33.14854 -32.30816 -30.89760 -30.47315 -29.40634 -27.70005 -25.03988 -24.15046 -23.20861 -21.79873 -21.09667 -20.21520 -19.36561 -18.34393 -16.39206 -15.99285 -15.65113 -14.97741 -14.77448 -14.44209 -14.30911 -14.17464 -13.80890 -13.47364 -13.12453 -12.78118 -12.66616 -12.29172 -12.13038 -11.97686 -11.54419 -11.51152 -11.30923 -11.17362 -11.10808 -10.94880 -10.91508 -10.78270 -10.75077 -10.53127 -10.18268 -10.00035 -9.88998 -9.62224 -9.51052 -9.07124 -8.86253 -8.58274 -8.24370 -7.57172 -5.91971 -3.95987 3.30870 3.38551 3.40762 4.21784 4.45332 4.47726 4.65388 4.76303 4.87046 5.08133 5.27994 5.38013 5.38797 5.44945 5.65500 5.69181 5.71959 5.74914 5.78745 5.87008 5.90443 5.94374 6.04715 6.09034 6.15561 6.21585 6.31462 6.38116 6.39630 6.48484 6.58425 6.62032 6.65583 6.84125 6.85370 6.94209 7.16474 7.24526 7.48393 7.58773 7.66071 7.73176 7.74311 7.81605 8.01579 8.22504 8.54772 9.06355 9.66679 11.13842 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018208 B = 0.005745 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.402629 B = 4872.495303 C = 5663.284665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.148 4.148 3 C 0.132 3.868 4 O -0.555 6.555 5 C -0.141 4.141 6 C 0.054 3.946 7 N -0.534 5.534 8 C 0.091 3.909 9 C -0.127 4.127 10 C -0.104 4.104 11 C 0.043 3.957 12 C -0.497 4.497 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.881 3.119 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.106 4.106 21 C -0.097 4.097 22 C 0.056 3.944 23 C -0.098 4.098 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.370 0.630 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.012 0.988 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.258 0.742 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.070 0.930 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -16.641 -0.860 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.186 4.186 3 C 0.091 3.909 4 O -0.361 6.361 5 C -0.179 4.179 6 C -0.074 4.074 7 N -0.257 5.257 8 C -0.016 4.016 9 C -0.166 4.166 10 C -0.143 4.143 11 C 0.025 3.975 12 C -0.536 4.536 13 H 0.072 0.928 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.709 3.291 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.144 4.144 21 C -0.134 4.134 22 C -0.072 4.072 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.218 0.782 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.157 -16.748 -1.072 16.783 hybrid contribution -1.884 0.467 0.873 2.129 sum -1.727 -16.281 -0.199 16.374 Atomic orbital electron populations 1.21863 0.95847 1.01848 1.02040 1.22196 0.96313 0.97497 1.02607 1.21264 0.95244 0.90129 0.84259 1.86578 1.27938 1.81224 1.40372 1.22329 0.99555 0.97219 0.98793 1.22033 0.88483 0.95183 1.01727 1.62283 1.04674 1.19095 1.39696 1.21695 0.97806 0.85763 0.96356 1.21962 1.02517 0.96804 0.95339 1.21455 0.94675 0.94871 1.03259 1.18689 0.95684 0.93525 0.89600 1.21129 0.91386 1.29770 1.11284 0.92843 1.24928 0.97245 0.95709 0.96055 1.69874 1.34265 1.33066 1.15825 0.86769 0.86839 0.77343 0.78124 1.20873 1.21376 1.20027 1.21554 0.97401 0.95462 1.00026 1.21470 1.01393 0.95536 0.95044 1.21948 0.98391 0.93603 0.93296 1.21558 0.92578 0.97630 1.01805 0.92654 0.92015 0.92748 0.91482 0.91154 0.78242 0.90755 0.91533 0.93580 0.90346 0.91684 0.90846 0.95114 0.96968 0.89344 0.95928 0.93246 0.94872 0.93551 0.93947 0.91187 0.93624 0.91565 0.91525 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.22 37.16 0.34 -0.99 16 2 C -0.15 -1.42 5.24 -26.73 -0.14 -1.56 16 3 C 0.13 1.58 0.74 -90.50 -0.07 1.51 16 4 O -0.56 -7.47 11.84 -35.23 -0.42 -7.89 16 5 C -0.14 -1.79 4.51 -26.65 -0.12 -1.91 16 6 C 0.05 0.87 4.50 -3.82 -0.02 0.86 16 7 N -0.53 -8.82 4.64 -226.68 -1.05 -9.87 16 8 C 0.09 1.71 2.23 -67.72 -0.15 1.56 16 9 C -0.13 -2.73 4.29 -26.73 -0.11 -2.84 16 10 C -0.10 -2.48 5.24 -26.73 -0.14 -2.62 16 11 C 0.04 1.07 2.59 -91.77 -0.24 0.83 16 12 C -0.50 -13.20 6.61 -34.44 -0.23 -13.43 16 13 H 0.05 1.41 6.71 -52.49 -0.35 1.06 16 14 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 15 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 16 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.11 -2.23 5.41 -26.71 -0.14 -2.37 16 21 C -0.10 -1.87 4.78 -26.71 -0.13 -1.99 16 22 C 0.06 0.85 4.89 -3.83 -0.02 0.83 16 23 C -0.10 -1.24 5.11 -26.65 -0.14 -1.37 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 26 H 0.05 0.43 6.89 -51.93 -0.36 0.07 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.37 3.92 7.53 45.56 0.34 4.26 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.76 6.51 -51.93 -0.34 0.43 16 32 H 0.05 0.86 6.24 -51.93 -0.32 0.54 16 33 H 0.08 1.35 6.03 -51.93 -0.31 1.04 16 34 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 35 H 0.07 1.75 5.60 -51.93 -0.29 1.46 16 36 H 0.03 0.64 6.65 -51.93 -0.35 0.29 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.45 4.77 -51.93 -0.25 1.20 16 45 H 0.05 0.80 6.35 -51.93 -0.33 0.47 16 46 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 339.10 15.07 5.11 5.11 Total: -1.00 -28.18 339.10 -9.97 -38.16 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.83 Total: 4.99 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.39 Total: -21.91 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: -0.43 Total: -34.64 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.42 Total: -7.89 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.18 -9.97 -38.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.007 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds