Wall clock time and date at job start Tue Mar 31 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 108.69019 * 2 1 4 4 C 1.53839 * 108.81138 * 241.64903 * 2 1 3 5 5 N 1.44430 * 112.03525 * 197.63027 * 4 2 1 6 6 C 1.46900 * 110.95272 * 215.94588 * 5 4 2 7 7 C 1.52998 * 109.47052 * 67.78985 * 6 5 4 8 8 C 1.53002 * 109.46852 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.47176 * 60.00571 * 8 7 6 10 10 C 1.50700 * 109.47403 * 59.99690 * 9 8 7 11 11 H 1.08001 * 119.99554 * 240.00184 * 10 9 8 12 12 C 1.37871 * 119.99934 * 59.99954 * 10 9 8 13 13 N 1.31515 * 120.00448 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99789 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46855 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46913 * 120.00346 * 14 12 10 17 17 H 1.48493 * 109.46903 * 240.00160 * 14 12 10 18 18 C 1.52998 * 109.46764 * 299.99483 * 9 8 7 19 19 C 1.52997 * 109.47077 * 307.78894 * 6 5 4 20 20 C 1.47812 * 110.25012 * 92.56123 * 5 4 2 21 21 C 1.46578 * 112.33585 * 279.43481 * 20 5 4 22 22 C 1.54364 * 111.47497 * 60.85581 * 21 20 5 23 23 O 1.40315 * 108.91890 * 283.02085 * 22 21 20 24 24 H 1.08995 * 109.47565 * 301.65459 * 1 2 3 25 25 H 1.09003 * 109.47207 * 61.65882 * 1 2 3 26 26 H 1.09006 * 109.47600 * 181.65398 * 1 2 3 27 27 H 1.09001 * 109.47127 * 178.34480 * 3 2 1 28 28 H 1.08999 * 109.46923 * 298.34337 * 3 2 1 29 29 H 1.08995 * 109.47434 * 58.34073 * 3 2 1 30 30 H 1.08998 * 108.95465 * 318.31607 * 4 2 1 31 31 H 1.09001 * 108.95139 * 77.04642 * 4 2 1 32 32 H 1.08997 * 109.47135 * 187.79177 * 6 5 4 33 33 H 1.08997 * 109.47307 * 300.00087 * 7 6 5 34 34 H 1.09000 * 109.47119 * 60.00323 * 7 6 5 35 35 H 1.09001 * 109.47110 * 299.99724 * 8 7 6 36 36 H 1.09005 * 109.47001 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47059 * 179.97438 * 9 8 7 38 38 H 0.96991 * 120.00274 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.47370 * 299.99890 * 18 9 8 40 40 H 1.09001 * 109.47323 * 180.02562 * 18 9 8 41 41 H 1.08997 * 109.47608 * 300.00035 * 19 6 5 42 42 H 1.09001 * 109.47376 * 60.00100 * 19 6 5 43 43 H 1.09003 * 108.89234 * 158.73323 * 20 5 4 44 44 H 1.09000 * 108.89332 * 40.14436 * 20 5 4 45 45 H 1.08994 * 109.07721 * 181.36615 * 21 20 5 46 46 H 1.08997 * 109.08047 * 300.34196 * 21 20 5 47 47 H 1.09001 * 109.56258 * 42.84469 * 22 21 20 48 48 H 1.08996 * 109.56187 * 163.18659 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0202 1.4493 0.0000 4 6 2.0260 -0.6915 -1.2816 5 7 3.4085 -1.0966 -1.1783 6 6 4.0983 -0.9436 -2.4663 7 6 4.2179 0.5431 -2.8073 8 6 4.9369 0.7023 -4.1485 9 6 4.1387 -0.0093 -5.2427 10 6 2.7623 0.5972 -5.3355 11 1 1.8895 -0.0165 -5.1680 12 6 2.6172 1.9353 -5.6343 13 7 3.6801 2.6824 -5.8387 14 14 0.9109 2.6869 -5.7500 15 1 -0.1094 1.6422 -5.4799 16 1 0.7808 3.7760 -4.7489 17 1 0.7051 3.2399 -7.1127 18 6 4.0191 -1.4959 -4.9016 19 6 3.2997 -1.6552 -3.5602 20 6 3.4986 -2.4892 -0.6913 21 6 3.3465 -2.5816 0.7636 22 6 1.9716 -2.0510 1.2229 23 8 1.9950 -0.6483 1.2017 24 1 -0.3634 0.5393 0.8747 25 1 -0.3634 0.4879 -0.9045 26 1 -0.3634 -1.0273 0.0297 27 1 3.1097 1.4643 0.0297 28 1 1.6745 1.9497 -0.9045 29 1 1.6258 1.9663 0.8747 30 1 1.4114 -1.5719 -1.4694 31 1 1.9214 -0.0018 -2.1191 32 1 5.0938 -1.3823 -2.3996 33 1 3.2223 0.9818 -2.8740 34 1 4.7869 1.0500 -2.0280 35 1 5.9325 0.2638 -4.0813 36 1 5.0225 1.7615 -4.3913 37 1 4.6507 0.1046 -6.1982 38 1 3.5780 3.6237 -6.0493 39 1 5.0148 -1.9346 -4.8346 40 1 3.4509 -2.0031 -5.6814 41 1 3.2144 -2.7143 -3.3172 42 1 2.3041 -1.2165 -3.6269 43 1 4.4691 -2.8990 -0.9714 44 1 2.7158 -3.0806 -1.1663 45 1 3.4456 -3.6238 1.0667 46 1 4.1320 -1.9964 1.2418 47 1 1.1965 -2.4133 0.5475 48 1 1.7665 -2.3975 2.2357 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:12 Heat of formation + Delta-G solvation = -58.392670 kcal Electronic energy + Delta-G solvation = -24972.288449 eV Core-core repulsion = 21833.348149 eV Total energy + Delta-G solvation = -3138.940300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08942 -37.90552 -35.38103 -34.24479 -32.31774 -30.81292 -29.62039 -28.02917 -27.16273 -26.46851 -24.92378 -23.82628 -21.76197 -20.84405 -20.05290 -19.55109 -18.39873 -16.73040 -16.12080 -15.62997 -14.89719 -14.70707 -14.58235 -14.34192 -13.99473 -13.57418 -13.26065 -13.10244 -12.90932 -12.74221 -12.25131 -12.02054 -11.94648 -11.67199 -11.42992 -11.39135 -11.23665 -11.07992 -10.98526 -10.88935 -10.80528 -10.52391 -10.51447 -10.21541 -10.15021 -10.00952 -9.53920 -9.22269 -9.19417 -8.87395 -8.62587 -8.26787 -7.76597 -5.96560 -4.01052 3.27080 3.36555 3.38167 3.82121 4.28912 4.43295 4.95061 5.01418 5.09994 5.19714 5.25166 5.33834 5.48150 5.50837 5.57417 5.67071 5.70775 5.78992 5.83273 5.85419 6.00700 6.03704 6.08644 6.09968 6.18116 6.21365 6.29203 6.32907 6.40574 6.48616 6.51659 6.64256 6.65339 6.75115 6.79145 6.87411 7.03008 7.17979 7.39887 7.55574 7.59263 7.67347 7.73725 7.76453 7.96922 8.18818 8.49693 9.01418 9.62074 11.09294 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.006778 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.214465 B = 4129.971886 C = 5006.354667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.123 3.877 3 C -0.135 4.135 4 C 0.031 3.969 5 N -0.520 5.520 6 C 0.092 3.908 7 C -0.088 4.088 8 C -0.107 4.107 9 C 0.043 3.957 10 C -0.500 4.500 11 H 0.052 0.948 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.878 3.122 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.285 1.285 18 C -0.103 4.103 19 C -0.135 4.135 20 C 0.055 3.945 21 C -0.146 4.146 22 C 0.073 3.927 23 O -0.372 6.372 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.013 0.987 36 H 0.092 0.908 37 H 0.023 0.977 38 H 0.258 0.742 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.029 0.971 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.042 0.958 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.635 -7.901 11.609 14.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.099 4.099 5 N -0.242 5.242 6 C -0.015 4.015 7 C -0.126 4.126 8 C -0.146 4.146 9 C 0.025 3.975 10 C -0.538 4.538 11 H 0.071 0.929 12 C -0.138 4.138 13 N -0.528 5.528 14 Si 0.707 3.293 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.141 4.141 19 C -0.174 4.174 20 C -0.072 4.072 21 C -0.184 4.184 22 C -0.005 4.005 23 O -0.291 6.291 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.110 0.890 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.096 0.904 47 H 0.061 0.939 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.285 -7.303 12.060 14.283 hybrid contribution -1.476 -0.379 -0.962 1.802 sum -3.761 -7.682 11.098 14.012 Atomic orbital electron populations 1.22384 0.96222 1.01796 1.02647 1.21979 0.91608 0.93554 0.84452 1.21760 1.03034 0.92856 1.01517 1.22560 0.89292 1.00010 0.97995 1.61610 1.13367 1.20602 1.28641 1.21867 0.96001 0.98421 0.85234 1.21405 1.01821 0.92473 0.96861 1.21516 0.94755 1.04140 0.94168 1.18696 0.95852 0.88674 0.94309 1.21139 0.92023 0.93930 1.46716 0.92936 1.24913 0.95954 0.97387 0.95528 1.69868 1.27865 1.06535 1.48517 0.86749 0.85419 0.79412 0.77754 1.19933 1.20997 1.21141 1.21509 0.97237 1.00137 0.95233 1.22117 1.01210 0.97410 0.96675 1.21078 1.00911 0.89688 0.95555 1.21273 0.99721 1.00696 0.96746 1.22220 0.95618 0.82484 1.00185 1.87423 1.86155 1.18411 1.37073 0.91882 0.91394 0.92998 0.90962 0.91279 0.92886 0.94898 0.88495 0.91476 0.91080 0.94177 0.96818 0.88982 0.95861 0.93185 0.94905 0.93825 0.94952 0.91032 0.91578 0.95288 0.91549 0.90449 0.93941 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 8.45 37.16 0.31 -1.91 16 2 C 0.12 1.82 0.95 -90.19 -0.09 1.73 16 3 C -0.13 -2.02 8.67 37.15 0.32 -1.70 16 4 C 0.03 0.49 2.39 -4.71 -0.01 0.48 16 5 N -0.52 -8.38 4.35 -231.17 -1.00 -9.39 16 6 C 0.09 1.65 2.13 -67.72 -0.14 1.51 16 7 C -0.09 -1.80 4.97 -26.73 -0.13 -1.93 16 8 C -0.11 -2.46 5.23 -26.73 -0.14 -2.60 16 9 C 0.04 1.03 2.59 -91.78 -0.24 0.80 16 10 C -0.50 -12.89 6.61 -34.44 -0.23 -13.12 16 11 H 0.05 1.36 6.71 -52.49 -0.35 1.01 16 12 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 13 N -0.89 -24.63 11.32 55.43 0.63 -24.00 16 14 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 18 C -0.10 -2.10 5.41 -26.70 -0.14 -2.24 16 19 C -0.14 -2.51 4.43 -26.70 -0.12 -2.63 16 20 C 0.06 0.77 4.31 -6.39 -0.03 0.74 16 21 C -0.15 -1.78 5.76 -29.08 -0.17 -1.95 16 22 C 0.07 0.90 6.25 37.87 0.24 1.14 16 23 O -0.37 -5.55 9.56 -33.67 -0.32 -5.87 16 24 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.05 0.62 7.33 -51.93 -0.38 0.24 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.05 8.04 -51.93 -0.42 0.64 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.52 6.56 -51.93 -0.34 0.17 16 31 H 0.10 1.77 4.76 -51.93 -0.25 1.53 16 32 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 33 H 0.07 1.58 5.48 -51.93 -0.28 1.30 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.55 7.28 -51.93 -0.38 0.17 16 42 H 0.07 1.44 5.01 -51.93 -0.26 1.18 16 43 H 0.07 0.89 7.61 -51.93 -0.40 0.50 16 44 H 0.03 0.40 7.01 -51.93 -0.36 0.04 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.04 0.52 6.32 -51.93 -0.33 0.19 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -26.73 341.50 -9.91 -36.64 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.68 Total: 1.95 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.66 Total: -20.10 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: -0.38 Total: -33.39 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.32 Total: -5.87 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.73 -9.91 -36.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.757 kcal (2) G-P(sol) polarization free energy of solvation -26.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds