Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48504 * 109.47104 * 270.00178 * 3 2 1 5 5 H 1.48495 * 109.47249 * 29.99924 * 3 2 1 6 6 H 1.48499 * 109.47293 * 149.99932 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46847 * 111.00065 * 304.20563 * 13 12 11 15 15 C 1.53040 * 109.52322 * 174.16122 * 14 13 12 16 16 C 1.53125 * 109.27664 * 59.18447 * 15 14 13 17 17 C 1.53123 * 109.15820 * 302.34092 * 16 15 14 18 18 H 1.08996 * 109.53714 * 297.69735 * 17 16 15 19 19 C 1.52998 * 109.50308 * 177.59845 * 17 16 15 20 20 C 1.52994 * 109.47316 * 65.19556 * 19 17 16 21 21 O 1.42901 * 109.47464 * 179.97438 * 20 19 17 22 22 C 1.46852 * 111.00073 * 179.97438 * 13 12 11 23 23 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 12 11 25 25 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 27 27 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 28 28 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 1.08996 * 109.46045 * 294.17749 * 14 13 12 33 33 H 1.08997 * 109.46317 * 54.14819 * 14 13 12 34 34 H 1.08992 * 109.50752 * 299.23972 * 15 14 13 35 35 H 1.08998 * 109.49999 * 179.12029 * 15 14 13 36 36 H 1.08994 * 109.52063 * 182.43908 * 16 15 14 37 37 H 1.08994 * 109.57577 * 62.27556 * 16 15 14 38 38 H 1.08994 * 109.47187 * 185.20149 * 19 17 16 39 39 H 1.09002 * 109.46608 * 305.19761 * 19 17 16 40 40 H 1.09004 * 109.47502 * 300.00519 * 20 19 17 41 41 H 1.09001 * 109.46888 * 59.99765 * 20 19 17 42 42 H 0.96694 * 114.00069 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.45990 * 305.85674 * 22 13 12 44 44 H 1.08996 * 109.46046 * 65.82827 * 22 13 12 45 45 H 1.08993 * 109.47662 * 180.02562 * 23 12 11 46 46 H 1.09002 * 109.47075 * 300.00932 * 23 12 11 47 47 H 1.09002 * 109.47153 * 60.00231 * 24 23 12 48 48 H 1.09001 * 109.47289 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 2.2742 -3.5590 -4.9158 15 6 3.1759 -3.3316 -6.1312 16 6 4.2101 -4.4580 -6.2112 17 6 5.0156 -4.4941 -4.9095 18 1 5.5566 -3.5555 -4.7895 19 6 6.0111 -5.6549 -4.9568 20 6 7.0417 -5.3985 -6.0581 21 8 7.9718 -6.4825 -6.1019 22 6 4.0609 -4.6874 -3.7293 23 6 3.1255 -3.5813 -1.2478 24 6 2.2454 -3.6621 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 -0.3364 -1.7521 -1.2494 28 1 -0.1727 -3.5247 -1.2492 29 1 1.7970 -1.5557 -2.4980 30 1 0.6257 -2.5581 -3.3881 31 1 1.7013 -4.6066 -2.4973 32 1 1.7526 -4.5100 -5.0234 33 1 1.5458 -2.7510 -4.8478 34 1 3.6874 -2.3744 -6.0309 35 1 2.5707 -3.3282 -7.0377 36 1 4.8817 -4.2769 -7.0503 37 1 3.7012 -5.4117 -6.3511 38 1 6.5190 -5.7374 -3.9960 39 1 5.4780 -6.5822 -5.1668 40 1 6.5337 -5.3160 -7.0191 41 1 7.5746 -4.4711 -5.8482 42 1 8.6554 -6.3870 -6.7791 43 1 4.6299 -4.6988 -2.7996 44 1 3.5312 -5.6332 -3.8424 45 1 3.8341 -4.4095 -1.2475 46 1 3.6704 -2.6373 -1.2478 47 1 1.7004 -4.6061 0.0012 48 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = -79.068810 kcal Electronic energy + Delta-G solvation = -23607.240678 eV Core-core repulsion = 20467.403793 eV Total energy + Delta-G solvation = -3139.836885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.56632 -37.66686 -36.68435 -34.07319 -32.45397 -31.49754 -29.87310 -28.46753 -27.82929 -24.93723 -24.03623 -23.25994 -21.70106 -20.76917 -19.98006 -19.59184 -18.57873 -17.56611 -15.97729 -15.70003 -15.52534 -14.80805 -14.65374 -14.41630 -14.00649 -13.86884 -13.58221 -13.25811 -13.05188 -12.94426 -12.58378 -12.08834 -11.88011 -11.76534 -11.58329 -11.36138 -11.03513 -10.94512 -10.90722 -10.76275 -10.69247 -10.49577 -10.30800 -10.21123 -10.16377 -10.00224 -9.87003 -9.53808 -9.10130 -8.74989 -8.53435 -8.21096 -7.85101 -5.89701 -3.93175 3.35862 3.42586 3.45961 3.88359 4.34817 4.51447 4.66025 4.80929 4.93822 5.02333 5.13641 5.25398 5.37661 5.41112 5.53391 5.58632 5.61684 5.67069 5.71262 5.77554 5.84642 5.86725 5.94992 6.02331 6.10804 6.18159 6.21973 6.27736 6.35352 6.47038 6.53401 6.59691 6.62178 6.76763 6.81990 6.88844 7.17583 7.27808 7.37472 7.47770 7.55432 7.60016 7.75120 7.82491 8.00915 8.22745 8.56550 9.08934 9.69719 11.16385 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.004089 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.660770 B = 6846.745557 C = 6930.999405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.496 4.496 8 H 0.055 0.945 9 C 0.044 3.956 10 C -0.107 4.107 11 C -0.093 4.093 12 C 0.096 3.904 13 N -0.532 5.532 14 C 0.051 3.949 15 C -0.116 4.116 16 C -0.116 4.116 17 C -0.081 4.081 18 H 0.080 0.920 19 C -0.114 4.114 20 C 0.075 3.925 21 O -0.578 6.578 22 C 0.060 3.940 23 C -0.098 4.098 24 C -0.106 4.106 25 H 0.257 0.743 26 H 0.023 0.977 27 H 0.092 0.908 28 H 0.010 0.990 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.023 0.977 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.377 0.623 43 H 0.079 0.921 44 H 0.025 0.975 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.030 0.970 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.137 -9.529 -13.154 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.712 3.288 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.026 3.974 10 C -0.146 4.146 11 C -0.130 4.130 12 C -0.012 4.012 13 N -0.256 5.256 14 C -0.077 4.077 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.100 4.100 18 H 0.099 0.901 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.383 6.383 22 C -0.068 4.068 23 C -0.135 4.135 24 C -0.145 4.145 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.110 0.890 28 H 0.029 0.971 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.860 -9.176 -12.630 17.950 hybrid contribution 0.304 0.393 -0.580 0.763 sum 9.163 -8.784 -13.209 18.320 Atomic orbital electron populations 1.69866 1.05824 1.26070 1.51541 1.24920 0.94730 0.98755 0.95551 0.86721 0.79937 0.84080 0.78032 1.20787 1.21509 1.20058 1.21150 0.92744 0.90362 1.49187 0.92653 1.18688 0.92647 0.92134 0.93974 1.21521 0.98713 0.99211 0.95113 1.21485 0.96110 0.98302 0.97122 1.21653 0.93278 0.97527 0.88693 1.61933 1.17684 1.43832 1.02150 1.22132 0.95436 1.00345 0.89746 1.21587 0.97419 0.99223 0.97181 1.21691 0.97728 0.98921 0.96990 1.21121 0.95429 0.98393 0.95094 0.90114 1.21518 0.95881 0.99016 0.98783 1.22269 0.90476 0.88799 0.98701 1.86478 1.44284 1.46566 1.60960 1.22096 0.94402 0.92024 0.98292 1.21497 0.97167 1.01286 0.93599 1.21558 0.98298 0.98520 0.96081 0.93264 0.95910 0.88980 0.97090 0.90233 0.94994 0.95948 0.95771 0.89919 0.91088 0.92008 0.92224 0.92445 0.91094 0.91484 0.93530 0.93621 0.77654 0.90240 0.95638 0.94627 0.90332 0.95115 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 3 Si 0.88 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.22 6.61 -34.44 -0.23 -13.45 16 8 H 0.06 1.48 6.71 -52.49 -0.35 1.13 16 9 C 0.04 1.08 2.59 -91.77 -0.24 0.84 16 10 C -0.11 -2.51 5.24 -26.73 -0.14 -2.65 16 11 C -0.09 -1.94 4.63 -26.73 -0.12 -2.07 16 12 C 0.10 1.78 1.95 -67.71 -0.13 1.64 16 13 N -0.53 -8.62 4.52 -226.69 -1.03 -9.65 16 14 C 0.05 0.75 5.13 -3.83 -0.02 0.73 16 15 C -0.12 -1.38 6.09 -26.65 -0.16 -1.54 16 16 C -0.12 -1.23 4.98 -26.60 -0.13 -1.36 16 17 C -0.08 -0.94 2.35 -90.54 -0.21 -1.15 16 18 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 19 C -0.11 -1.20 5.05 -26.73 -0.14 -1.34 16 20 C 0.08 0.69 6.81 37.15 0.25 0.94 16 21 O -0.58 -5.59 13.66 -35.23 -0.48 -6.07 16 22 C 0.06 0.84 4.50 -3.83 -0.02 0.82 16 23 C -0.10 -1.89 4.75 -26.73 -0.13 -2.01 16 24 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 28 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 1.89 7.22 -51.93 -0.37 1.52 16 30 H 0.03 0.62 6.22 -51.93 -0.32 0.30 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 1.28 5.90 -51.93 -0.31 0.98 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.38 6.63 -51.93 -0.34 0.03 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.38 1.85 9.12 45.56 0.42 2.26 16 43 H 0.08 1.15 6.00 -51.93 -0.31 0.84 16 44 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.04 0.61 6.28 -51.93 -0.33 0.28 16 46 H 0.08 1.68 6.62 -51.93 -0.34 1.33 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -28.79 347.52 -10.30 -39.09 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -7.98 Total: 1.18 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.65 Total: -21.42 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.40 Total: -34.33 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.48 Total: -6.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.79 -10.30 -39.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.983 kcal (2) G-P(sol) polarization free energy of solvation -28.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds