Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99940 * 2 1 4 4 H 1.48504 * 109.47104 * 270.00178 * 3 2 1 5 5 H 1.48495 * 109.47249 * 29.99924 * 3 2 1 6 6 H 1.48499 * 109.47293 * 149.99932 * 3 2 1 7 7 C 1.37879 * 120.00409 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00516 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99661 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46953 * 60.00040 * 9 7 2 11 11 C 1.52997 * 109.47317 * 60.00071 * 10 9 7 12 12 C 1.53000 * 109.47060 * 59.99960 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46847 * 111.00065 * 304.20563 * 13 12 11 15 15 C 1.53040 * 109.52322 * 174.16122 * 14 13 12 16 16 C 1.53125 * 109.27664 * 59.18447 * 15 14 13 17 17 C 1.53123 * 109.15820 * 302.34092 * 16 15 14 18 18 H 1.08996 * 109.53714 * 297.69735 * 17 16 15 19 19 C 1.52998 * 109.50308 * 177.59845 * 17 16 15 20 20 C 1.52994 * 109.47316 * 65.19556 * 19 17 16 21 21 O 1.42901 * 109.47464 * 179.97438 * 20 19 17 22 22 C 1.46852 * 111.00073 * 179.97438 * 13 12 11 23 23 C 1.53002 * 109.47233 * 299.99657 * 12 11 10 24 24 C 1.52997 * 109.46817 * 60.00194 * 23 12 11 25 25 H 0.96998 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46974 * 299.99788 * 9 7 2 27 27 H 1.08996 * 109.46929 * 299.99175 * 10 9 7 28 28 H 1.09002 * 109.46716 * 179.97438 * 10 9 7 29 29 H 1.09002 * 109.47153 * 299.99641 * 11 10 9 30 30 H 1.09001 * 109.46832 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 32 32 H 1.08996 * 109.46045 * 294.17749 * 14 13 12 33 33 H 1.08997 * 109.46317 * 54.14819 * 14 13 12 34 34 H 1.08992 * 109.50752 * 299.23972 * 15 14 13 35 35 H 1.08998 * 109.49999 * 179.12029 * 15 14 13 36 36 H 1.08994 * 109.52063 * 182.43908 * 16 15 14 37 37 H 1.08994 * 109.57577 * 62.27556 * 16 15 14 38 38 H 1.08994 * 109.47187 * 185.20149 * 19 17 16 39 39 H 1.09002 * 109.46608 * 305.19761 * 19 17 16 40 40 H 1.09004 * 109.47502 * 300.00519 * 20 19 17 41 41 H 1.09001 * 109.46888 * 59.99765 * 20 19 17 42 42 H 0.96694 * 114.00069 * 179.97438 * 21 20 19 43 43 H 1.09003 * 109.45990 * 305.85674 * 22 13 12 44 44 H 1.08996 * 109.46046 * 65.82827 * 22 13 12 45 45 H 1.08993 * 109.47662 * 180.02562 * 23 12 11 46 46 H 1.09002 * 109.47075 * 300.00932 * 23 12 11 47 47 H 1.09002 * 109.47153 * 60.00231 * 24 23 12 48 48 H 1.09001 * 109.47289 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 0.3720 -2.5805 -1.2490 11 6 1.2520 -2.4997 -2.4979 12 6 2.2463 -3.6627 -2.4973 13 7 3.0916 -3.5847 -3.6962 14 6 2.2742 -3.5590 -4.9158 15 6 3.1759 -3.3316 -6.1312 16 6 4.2101 -4.4580 -6.2112 17 6 5.0156 -4.4941 -4.9095 18 1 5.5566 -3.5555 -4.7895 19 6 6.0111 -5.6549 -4.9568 20 6 7.0417 -5.3985 -6.0581 21 8 7.9718 -6.4825 -6.1019 22 6 4.0609 -4.6874 -3.7293 23 6 3.1255 -3.5813 -1.2478 24 6 2.2454 -3.6621 0.0011 25 1 -0.4850 0.8400 -0.0004 26 1 0.6241 -2.5567 0.8903 27 1 -0.3364 -1.7521 -1.2494 28 1 -0.1727 -3.5247 -1.2492 29 1 1.7970 -1.5557 -2.4980 30 1 0.6257 -2.5581 -3.3881 31 1 1.7013 -4.6066 -2.4973 32 1 1.7526 -4.5100 -5.0234 33 1 1.5458 -2.7510 -4.8478 34 1 3.6874 -2.3744 -6.0309 35 1 2.5707 -3.3282 -7.0377 36 1 4.8817 -4.2769 -7.0503 37 1 3.7012 -5.4117 -6.3511 38 1 6.5190 -5.7374 -3.9960 39 1 5.4780 -6.5822 -5.1668 40 1 6.5337 -5.3160 -7.0191 41 1 7.5746 -4.4711 -5.8482 42 1 8.6554 -6.3870 -6.7791 43 1 4.6299 -4.6988 -2.7996 44 1 3.5312 -5.6332 -3.8424 45 1 3.8341 -4.4095 -1.2475 46 1 3.6704 -2.6373 -1.2478 47 1 1.7004 -4.6061 0.0012 48 1 2.8717 -3.6037 0.8914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338342.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = -97.143692 kcal Electronic energy + Delta-G solvation = -23608.024463 eV Core-core repulsion = 20467.403793 eV Total energy + Delta-G solvation = -3140.620671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81179 -38.93483 -37.67146 -35.39716 -34.00083 -32.89036 -31.49190 -29.96115 -28.97753 -26.80555 -25.23867 -24.41496 -22.94831 -22.24394 -21.32343 -20.66129 -20.35940 -18.28060 -17.77069 -17.17252 -16.58973 -16.33795 -15.83212 -15.65694 -15.36393 -15.04438 -14.82796 -14.70913 -14.32458 -14.18658 -14.15834 -13.44042 -13.16254 -13.13192 -12.95671 -12.80748 -12.67600 -12.41291 -12.31218 -12.23199 -12.10000 -11.90353 -11.80413 -11.54685 -11.43591 -11.21873 -11.12430 -10.92426 -10.71834 -10.62760 -10.36766 -10.26757 -9.12295 -8.00506 -6.09686 1.41952 1.43750 1.52182 2.48165 2.90132 3.27970 3.44137 3.77818 3.89588 3.97453 4.08278 4.15381 4.28618 4.30778 4.40603 4.46771 4.53128 4.56246 4.60505 4.67355 4.71363 4.76361 4.85111 4.88961 4.90300 4.94568 4.95091 4.99719 5.00975 5.09922 5.13175 5.18923 5.22227 5.29430 5.39257 5.44202 5.53917 5.58355 5.67969 5.72138 5.76557 5.99314 6.21695 6.32346 6.36896 6.49199 6.93332 6.99250 7.55784 9.04528 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021773 B = 0.004089 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.660770 B = 6846.745557 C = 6930.999405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.014 3.986 3 Si 0.940 3.060 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.501 4.501 8 H 0.051 0.949 9 C 0.039 3.961 10 C -0.103 4.103 11 C -0.081 4.081 12 C 0.105 3.895 13 N -0.542 5.542 14 C 0.048 3.952 15 C -0.112 4.112 16 C -0.111 4.111 17 C -0.073 4.073 18 H 0.074 0.926 19 C -0.110 4.110 20 C 0.077 3.923 21 O -0.598 6.598 22 C 0.059 3.941 23 C -0.090 4.090 24 C -0.101 4.101 25 H 0.256 0.744 26 H -0.012 1.012 27 H 0.059 0.941 28 H 0.023 0.977 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.397 0.603 43 H 0.073 0.927 44 H 0.028 0.972 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.776 -10.507 -15.056 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.020 3.980 10 C -0.141 4.141 11 C -0.118 4.118 12 C -0.003 4.003 13 N -0.266 5.266 14 C -0.079 4.079 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.092 4.092 18 H 0.092 0.908 19 C -0.148 4.148 20 C -0.001 4.001 21 O -0.407 6.407 22 C -0.069 4.069 23 C -0.127 4.127 24 C -0.139 4.139 25 H 0.066 0.934 26 H 0.006 0.994 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.247 0.753 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.525 -10.160 -14.547 20.630 hybrid contribution -0.223 0.665 0.028 0.702 sum 10.302 -9.495 -14.519 20.176 Atomic orbital electron populations 1.70006 1.07019 1.26576 1.52490 1.25592 0.95438 1.01751 0.95553 0.85820 0.78905 0.80529 0.78010 1.20476 1.21360 1.19480 1.21378 0.92642 0.91445 1.48510 0.93038 1.18684 0.93120 0.93145 0.93004 1.21377 0.98423 0.98419 0.95893 1.21285 0.96231 0.97983 0.96344 1.21408 0.92908 0.96211 0.89769 1.61889 1.17769 1.45184 1.01803 1.22193 0.95705 0.99918 0.90107 1.21566 0.97481 0.99357 0.96525 1.21674 0.97569 0.98512 0.97067 1.21022 0.95105 0.98490 0.94598 0.90785 1.21440 0.95974 0.98309 0.99078 1.22236 0.90312 0.88844 0.98691 1.86421 1.45131 1.46898 1.62223 1.22160 0.94156 0.91249 0.99289 1.21388 0.97151 1.01100 0.93106 1.21466 0.97789 0.97534 0.97158 0.93439 0.99385 0.92248 0.95852 0.93359 0.93660 0.95560 0.95359 0.91494 0.91883 0.90080 0.90023 0.92026 0.92060 0.91735 0.92056 0.93045 0.75350 0.90899 0.95380 0.91968 0.92639 0.93464 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.64 11.32 21.45 0.24 -53.40 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.94 44.37 29.54 68.60 2.03 46.40 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.50 -27.31 6.61 25.60 0.17 -27.14 16 8 H 0.05 2.79 6.71 -2.91 -0.02 2.77 16 9 C 0.04 1.96 2.59 -11.54 -0.03 1.93 16 10 C -0.10 -4.91 5.24 30.59 0.16 -4.75 16 11 C -0.08 -3.42 4.63 30.59 0.14 -3.27 16 12 C 0.10 3.80 1.95 44.92 0.09 3.89 16 13 N -0.54 -16.86 4.52 -871.13 -3.94 -20.81 16 14 C 0.05 1.33 5.13 86.33 0.44 1.77 16 15 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 16 C -0.11 -2.00 4.98 30.68 0.15 -1.84 16 17 C -0.07 -1.52 2.35 -10.74 -0.03 -1.54 16 18 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 19 C -0.11 -2.06 5.05 30.59 0.15 -1.91 16 20 C 0.08 1.18 6.81 71.98 0.49 1.67 16 21 O -0.60 -10.05 13.66 -148.98 -2.04 -12.09 16 22 C 0.06 1.54 4.50 86.32 0.39 1.93 16 23 C -0.09 -3.38 4.75 30.59 0.15 -3.24 16 24 C -0.10 -4.21 5.41 30.60 0.17 -4.04 16 25 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 26 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 27 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 2.34 7.22 -2.39 -0.02 2.32 16 30 H 0.04 1.76 6.22 -2.39 -0.01 1.75 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.07 2.02 5.90 -2.39 -0.01 2.01 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.16 6.70 -2.39 -0.02 1.14 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 0.76 6.63 -2.39 -0.02 0.75 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.40 2.84 9.12 -74.06 -0.68 2.16 16 43 H 0.07 1.97 6.00 -2.39 -0.01 1.96 16 44 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.06 2.02 6.28 -2.39 -0.02 2.01 16 46 H 0.05 2.36 6.62 -2.39 -0.02 2.34 16 47 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -62.54 347.52 -0.38 -62.92 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.25 Total: 14.47 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.08 Total: -37.49 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -3.70 Total: -74.20 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -2.04 Total: -12.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -62.54 -0.38 -62.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338342.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.226 kcal (2) G-P(sol) polarization free energy of solvation -62.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds