Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99767 * 2 1 4 4 H 1.48501 * 109.47384 * 89.99573 * 3 2 1 5 5 H 1.48500 * 109.47228 * 209.99198 * 3 2 1 6 6 H 1.48499 * 109.47364 * 329.99407 * 3 2 1 7 7 C 1.37878 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99871 * 173.36468 * 7 2 1 9 9 C 1.50697 * 120.00242 * 353.36703 * 7 2 1 10 10 C 1.52990 * 109.47484 * 209.09818 * 9 7 2 11 11 C 1.53004 * 109.47131 * 300.00519 * 10 9 7 12 12 C 1.52997 * 109.46705 * 299.99164 * 11 10 9 13 13 N 1.46907 * 109.47138 * 180.02562 * 12 11 10 14 14 C 1.46849 * 110.99519 * 295.79418 * 13 12 11 15 15 C 1.53039 * 109.52174 * 185.83902 * 14 13 12 16 16 C 1.53119 * 109.27740 * 300.81910 * 15 14 13 17 17 C 1.53123 * 109.16010 * 57.65501 * 16 15 14 18 18 H 1.09001 * 109.53699 * 62.30524 * 17 16 15 19 19 C 1.53000 * 109.50487 * 182.40493 * 17 16 15 20 20 C 1.53009 * 109.46924 * 294.80384 * 19 17 16 21 21 O 1.42901 * 109.46782 * 179.97438 * 20 19 17 22 22 C 1.46839 * 110.99986 * 60.00162 * 13 12 11 23 23 C 1.52998 * 109.47098 * 60.00529 * 12 11 10 24 24 C 1.53002 * 109.46915 * 299.99739 * 23 12 11 25 25 H 0.97005 * 119.99743 * 174.72004 * 1 2 3 26 26 H 1.09005 * 109.47222 * 329.10499 * 9 7 2 27 27 H 1.09003 * 109.47069 * 59.99893 * 10 9 7 28 28 H 1.09001 * 109.47850 * 179.97438 * 10 9 7 29 29 H 1.08999 * 109.46905 * 180.02562 * 11 10 9 30 30 H 1.08995 * 109.47524 * 59.99703 * 11 10 9 31 31 H 1.08996 * 109.47665 * 299.99963 * 12 11 10 32 32 H 1.08997 * 109.46443 * 305.85057 * 14 13 12 33 33 H 1.08994 * 109.46483 * 65.82188 * 14 13 12 34 34 H 1.08996 * 109.50664 * 180.88202 * 15 14 13 35 35 H 1.09000 * 109.50384 * 60.76307 * 15 14 13 36 36 H 1.08995 * 109.52723 * 297.75130 * 16 15 14 37 37 H 1.09002 * 109.57618 * 177.58695 * 16 15 14 38 38 H 1.09001 * 109.47062 * 54.79956 * 19 17 16 39 39 H 1.08997 * 109.47415 * 174.80280 * 19 17 16 40 40 H 1.09001 * 109.46902 * 299.99670 * 20 19 17 41 41 H 1.08997 * 109.47159 * 59.99740 * 20 19 17 42 42 H 0.96698 * 113.99771 * 179.97438 * 21 20 19 43 43 H 1.09008 * 109.46340 * 294.17856 * 22 13 12 44 44 H 1.08997 * 109.46341 * 54.14345 * 22 13 12 45 45 H 1.09003 * 109.47523 * 179.97438 * 23 12 11 46 46 H 1.09001 * 109.47616 * 59.99591 * 23 12 11 47 47 H 1.08995 * 109.47200 * 299.99680 * 24 23 12 48 48 H 1.08999 * 109.46978 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4402 -0.6999 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0792 -1.1972 -0.1075 9 6 1.2587 -2.4947 0.1519 10 6 2.1643 -3.5264 0.8273 11 6 3.4110 -3.7502 -0.0309 12 6 2.9947 -4.2630 -1.4110 13 7 4.1918 -4.4786 -2.2348 14 6 4.8917 -3.2125 -2.4873 15 6 6.0454 -3.4519 -3.4639 16 6 7.0099 -4.4792 -2.8649 17 6 6.2454 -5.7720 -2.5665 18 1 5.8544 -6.1869 -3.4955 19 6 7.1884 -6.7837 -1.9122 20 6 8.2779 -7.1841 -2.9091 21 8 9.1590 -8.1285 -2.2978 22 6 5.0859 -5.4653 -1.6159 23 6 2.0891 -3.2314 -2.0865 24 6 0.8424 -3.0075 -1.2283 25 1 -0.4850 -0.8365 -0.0773 26 1 0.3704 -2.3352 0.7632 27 1 2.4609 -3.1611 1.8105 28 1 1.6247 -4.4671 0.9372 29 1 4.0559 -4.4856 0.4501 30 1 3.9505 -2.8095 -0.1403 31 1 2.4553 -5.2038 -1.3016 32 1 4.1957 -2.4921 -2.9171 33 1 5.2853 -2.8217 -1.5490 34 1 6.5743 -2.5151 -3.6390 35 1 5.6511 -3.8296 -4.4073 36 1 7.4340 -4.0855 -1.9413 37 1 7.8109 -4.6854 -3.5748 38 1 7.6486 -6.3349 -1.0319 39 1 6.6240 -7.6679 -1.6163 40 1 7.8177 -7.6328 -3.7894 41 1 8.8424 -6.2998 -3.2050 42 1 9.8759 -8.4276 -2.8737 43 1 5.4786 -5.0640 -0.6816 44 1 4.5309 -6.3811 -1.4127 45 1 1.7929 -3.5965 -3.0699 46 1 2.6285 -2.2906 -2.1960 47 1 0.3029 -3.9482 -1.1189 48 1 0.1970 -2.2729 -1.7098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338343.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -85.091885 kcal Electronic energy + Delta-G solvation = -23700.630856 eV Core-core repulsion = 20560.532791 eV Total energy + Delta-G solvation = -3140.098065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.80146 -37.80402 -36.71616 -34.19658 -32.44455 -31.56523 -29.96309 -28.65655 -27.60713 -24.62410 -24.16588 -23.08142 -21.86218 -21.63172 -20.16581 -19.57789 -18.55133 -17.60381 -16.05758 -15.81903 -15.58227 -14.88038 -14.61822 -14.34946 -14.10477 -13.71973 -13.69366 -13.49394 -13.34163 -12.89967 -12.71528 -12.12304 -11.87624 -11.78257 -11.66181 -11.46213 -11.22707 -11.04552 -10.93438 -10.77686 -10.71261 -10.60990 -10.43092 -10.30782 -10.11851 -10.10186 -9.95908 -9.58878 -9.37048 -8.98105 -8.33796 -8.19885 -7.81301 -6.28171 -3.98145 3.44394 3.46228 3.62069 3.84565 4.33087 4.56302 4.62774 4.77574 4.93332 4.99390 5.12241 5.21998 5.35263 5.40000 5.49433 5.52559 5.58837 5.63154 5.64988 5.70399 5.82322 5.89547 5.92010 5.96776 5.99956 6.09811 6.21484 6.23279 6.28756 6.32672 6.39405 6.44255 6.48060 6.53771 6.62835 6.78037 6.93677 7.00463 7.17875 7.25553 7.34152 7.42769 7.53357 7.56009 7.70834 8.34180 8.51883 8.95358 9.72781 11.09810 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025916 B = 0.004077 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.143679 B = 6865.779934 C = 7309.225234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.019 3.981 3 Si 1.062 2.938 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.580 4.580 8 H 0.049 0.951 9 C 0.026 3.974 10 C -0.096 4.096 11 C -0.139 4.139 12 C 0.093 3.907 13 N -0.532 5.532 14 C 0.048 3.952 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.080 4.080 18 H 0.078 0.922 19 C -0.114 4.114 20 C 0.075 3.925 21 O -0.578 6.578 22 C 0.060 3.940 23 C -0.095 4.095 24 C -0.105 4.105 25 H 0.270 0.730 26 H 0.029 0.971 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.377 0.623 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.023 0.977 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 -12.041 -7.033 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.185 4.185 3 Si 0.891 3.109 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.618 4.618 8 H 0.067 0.933 9 C 0.007 3.993 10 C -0.135 4.135 11 C -0.177 4.177 12 C -0.015 4.015 13 N -0.255 5.255 14 C -0.080 4.080 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.099 4.099 18 H 0.096 0.904 19 C -0.152 4.152 20 C -0.002 4.002 21 O -0.383 6.383 22 C -0.068 4.068 23 C -0.133 4.133 24 C -0.143 4.143 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.224 0.776 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.537 -10.482 -6.925 18.468 hybrid contribution 0.840 -1.400 0.273 1.655 sum 14.377 -11.881 -6.652 19.802 Atomic orbital electron populations 1.70743 1.06926 1.30889 1.46748 1.25702 0.96525 1.02323 0.93975 0.83651 0.74759 0.75797 0.76686 1.21630 1.21614 1.21253 1.21922 0.94419 0.91525 1.53960 0.93264 1.18888 0.95025 0.93858 0.91531 1.21407 0.96039 0.97827 0.98204 1.22089 0.98736 1.00625 0.96291 1.21686 0.90126 0.98596 0.91062 1.62217 1.06878 1.09598 1.46830 1.22167 0.95677 0.92008 0.98130 1.21596 0.95990 0.98535 0.99286 1.21698 0.97668 0.95353 1.00706 1.21109 0.94580 0.94769 0.99432 0.90378 1.21525 0.95818 0.99314 0.98592 1.22265 0.91360 0.91186 0.95411 1.86482 1.43885 1.63303 1.44607 1.22035 0.93295 0.96150 0.95294 1.21453 0.96608 0.98335 0.96910 1.21611 0.95752 0.97673 0.99284 0.91828 0.95312 0.93463 0.95112 0.94379 0.90912 0.91389 0.89759 0.94591 0.91840 0.91418 0.92242 0.92227 0.91333 0.91222 0.93720 0.93452 0.77631 0.94588 0.91277 0.93832 0.90672 0.95822 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.25 13.55 55.43 0.75 -26.50 16 2 C 0.02 0.52 5.45 -17.82 -0.10 0.42 16 3 Si 1.06 24.99 29.91 -169.99 -5.08 19.91 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.58 -15.42 6.74 -34.44 -0.23 -15.65 16 8 H 0.05 1.31 6.07 -52.49 -0.32 0.99 16 9 C 0.03 0.62 2.23 -91.78 -0.20 0.42 16 10 C -0.10 -2.02 5.44 -26.73 -0.15 -2.17 16 11 C -0.14 -2.61 4.30 -26.73 -0.11 -2.73 16 12 C 0.09 1.64 2.29 -67.71 -0.16 1.49 16 13 N -0.53 -8.21 4.68 -226.70 -1.06 -9.28 16 14 C 0.05 0.73 4.67 -3.83 -0.02 0.72 16 15 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 16 C -0.12 -1.26 4.98 -26.61 -0.13 -1.39 16 17 C -0.08 -0.88 2.35 -90.54 -0.21 -1.10 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.11 -1.17 5.05 -26.73 -0.14 -1.31 16 20 C 0.08 0.66 6.81 37.16 0.25 0.92 16 21 O -0.58 -5.43 13.66 -35.23 -0.48 -5.92 16 22 C 0.06 0.81 4.17 -3.84 -0.02 0.80 16 23 C -0.10 -1.88 4.63 -26.73 -0.12 -2.01 16 24 C -0.10 -2.31 5.36 -26.73 -0.14 -2.45 16 25 H 0.27 7.99 6.43 -40.82 -0.26 7.73 16 26 H 0.03 0.77 6.94 -51.93 -0.36 0.41 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.66 6.53 -51.93 -0.34 0.32 16 30 H 0.07 1.51 4.78 -51.93 -0.25 1.27 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.42 5.90 -51.93 -0.31 1.11 16 33 H 0.04 0.60 6.71 -51.93 -0.35 0.25 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.38 6.63 -51.93 -0.34 0.03 16 42 H 0.38 1.74 9.12 45.56 0.42 2.16 16 43 H 0.04 0.52 6.63 -51.92 -0.34 0.17 16 44 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.62 5.29 -51.93 -0.27 1.35 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.05 1.27 7.75 -51.93 -0.40 0.87 16 LS Contribution 345.01 15.07 5.20 5.20 Total: -1.00 -29.58 345.01 -10.09 -39.67 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.77 Total: 2.55 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -1.64 Total: -25.63 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.31 Total: -35.78 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.48 Total: -5.92 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.58 -10.09 -39.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338343.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.425 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds