Wall clock time and date at job start Tue Mar 31 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00178 * 2 1 4 4 H 1.48493 * 109.47161 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.46822 * 30.00253 * 3 2 1 6 6 H 1.48499 * 109.47307 * 149.99852 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00107 * 0.02562 * 7 2 1 9 9 C 1.50704 * 119.99846 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46855 * 184.95339 * 9 7 2 11 11 C 1.46901 * 110.99695 * 163.96805 * 10 9 7 12 12 C 1.53007 * 109.46715 * 185.38143 * 11 10 9 13 13 C 1.53000 * 109.46716 * 173.58939 * 12 11 10 14 14 C 1.53178 * 109.54406 * 294.54905 * 13 12 11 15 15 C 1.53087 * 109.16437 * 183.15758 * 14 13 12 16 16 O 1.42902 * 109.41503 * 57.60751 * 15 14 13 17 17 C 1.42893 * 114.09918 * 298.84233 * 16 15 14 18 18 C 1.53096 * 109.41497 * 61.16092 * 17 16 15 19 19 C 1.46899 * 110.99553 * 287.91828 * 10 9 7 20 20 C 1.54271 * 110.03407 * 259.30251 * 19 10 9 21 21 C 1.54956 * 104.16134 * 217.14115 * 20 19 10 22 22 C 1.54891 * 102.77905 * 37.88685 * 21 20 19 23 23 C 1.53872 * 110.03179 * 142.08995 * 19 10 9 24 24 H 0.96997 * 120.00111 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47026 * 64.95534 * 9 7 2 26 26 H 1.09003 * 109.46956 * 304.94787 * 9 7 2 27 27 H 1.09000 * 109.46916 * 305.37679 * 11 10 9 28 28 H 1.08996 * 109.47355 * 65.37917 * 11 10 9 29 29 H 1.09000 * 109.46907 * 293.58533 * 12 11 10 30 30 H 1.08994 * 109.47426 * 53.58720 * 12 11 10 31 31 H 1.09000 * 109.54498 * 54.82008 * 13 12 11 32 32 H 1.09001 * 109.52421 * 303.06666 * 14 13 12 33 33 H 1.09006 * 109.52002 * 63.24927 * 14 13 12 34 34 H 1.09003 * 109.47918 * 297.62519 * 15 14 13 35 35 H 1.09003 * 109.48004 * 177.59805 * 15 14 13 36 36 H 1.08997 * 109.48659 * 301.17399 * 17 16 15 37 37 H 1.09004 * 109.49363 * 181.14735 * 17 16 15 38 38 H 1.09002 * 109.51964 * 182.48574 * 18 17 16 39 39 H 1.08993 * 109.52171 * 62.29731 * 18 17 16 40 40 H 1.08999 * 110.02192 * 20.69687 * 19 10 9 41 41 H 1.09006 * 110.47952 * 335.79182 * 20 19 10 42 42 H 1.08999 * 110.48367 * 98.42597 * 20 19 10 43 43 H 1.08997 * 110.72035 * 279.56937 * 21 20 19 44 44 H 1.09003 * 110.92101 * 156.29438 * 21 20 19 45 45 H 1.09006 * 110.48533 * 203.40264 * 22 21 20 46 46 H 1.08997 * 110.59526 * 80.81972 * 22 21 20 47 47 H 1.09004 * 110.03684 * 238.56790 * 23 19 10 48 48 H 1.09004 * 110.03425 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5740 -0.1189 11 6 5.4192 -2.5982 -0.5017 12 6 5.8568 -4.0439 -0.7460 13 6 7.2838 -4.0584 -1.2977 14 6 7.3052 -3.4005 -2.6809 15 6 8.7202 -3.4900 -3.2582 16 8 9.1217 -4.8600 -3.3211 17 6 9.1662 -5.5139 -2.0513 18 6 7.7690 -5.5057 -1.4255 19 6 3.7793 -3.3203 1.1268 20 6 5.0889 -3.3946 1.9388 21 6 5.0662 -4.8113 2.5660 22 6 4.4549 -5.6765 1.4361 23 6 3.3760 -4.7705 0.8076 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.7583 0.9305 26 1 3.8745 -0.6059 -0.8430 27 1 5.5595 -2.0172 -1.4132 28 1 6.0194 -2.1674 0.2997 29 1 5.8246 -4.5968 0.1928 30 1 5.1842 -4.5104 -1.4657 31 1 7.9415 -3.5116 -0.6221 32 1 6.6089 -3.9177 -3.3411 33 1 7.0140 -2.3539 -2.5909 34 1 9.4092 -2.9383 -2.6187 35 1 8.7317 -3.0614 -4.2603 36 1 9.8610 -4.9887 -1.3960 37 1 9.4991 -6.5434 -2.1837 38 1 7.8097 -5.9648 -0.4376 39 1 7.0823 -6.0655 -2.0603 40 1 3.0006 -2.8376 1.7173 41 1 5.9517 -3.2819 1.2822 42 1 5.0987 -2.6318 2.7174 43 1 4.4328 -4.8304 3.4528 44 1 6.0751 -5.1467 2.8065 45 1 4.0027 -6.5786 1.8485 46 1 5.2138 -5.9347 0.6976 47 1 2.4020 -4.9920 1.2439 48 1 3.3445 -4.9205 -0.2716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202661101.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:25 Heat of formation + Delta-G solvation = -44.261385 kcal Electronic energy + Delta-G solvation = -23852.968759 eV Core-core repulsion = 20714.641237 eV Total energy + Delta-G solvation = -3138.327522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97393 -38.92618 -35.18535 -34.48989 -32.36501 -31.20841 -29.87818 -28.32808 -27.89253 -26.14168 -24.13208 -23.58651 -21.37563 -21.23297 -20.38572 -19.96158 -18.53334 -16.71753 -16.27774 -16.19744 -16.03375 -15.32804 -14.90487 -14.44501 -14.24673 -14.18597 -13.84732 -13.70344 -12.90513 -12.79119 -12.54119 -12.22742 -12.15626 -12.07726 -11.80740 -11.43225 -11.23482 -11.07314 -10.86784 -10.84736 -10.70734 -10.61676 -10.54909 -10.33058 -10.20359 -10.05041 -9.91770 -9.82744 -9.69971 -9.44899 -9.25313 -8.55026 -7.27039 -6.03452 -3.99783 3.28086 3.35738 3.37383 3.76844 4.42766 4.53484 4.67403 4.78223 4.90160 4.93958 5.00673 5.05336 5.09276 5.25739 5.28799 5.34478 5.36449 5.47391 5.55361 5.65114 5.70514 5.74836 5.84836 5.86933 5.89853 5.92954 5.95664 6.01516 6.02493 6.11186 6.14679 6.22396 6.25702 6.30411 6.41021 6.54471 6.55565 6.68244 6.78390 6.80831 6.92927 7.03669 7.07806 7.65369 8.00303 8.13446 8.69848 9.07154 9.58942 11.09977 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.016668 B = 0.005032 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.456176 B = 5563.548904 C = 6736.703353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.504 4.504 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.518 5.518 11 C 0.048 3.952 12 C -0.132 4.132 13 C -0.088 4.088 14 C -0.153 4.153 15 C 0.060 3.940 16 O -0.386 6.386 17 C 0.061 3.939 18 C -0.149 4.149 19 C 0.088 3.912 20 C -0.175 4.175 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.112 4.112 24 H 0.263 0.737 25 H -0.014 1.014 26 H 0.020 0.980 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.449 -10.369 -0.140 20.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.701 3.299 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.194 1.194 7 C -0.542 4.542 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.241 5.241 11 C -0.080 4.080 12 C -0.169 4.169 13 C -0.107 4.107 14 C -0.190 4.190 15 C -0.017 4.017 16 O -0.305 6.305 17 C -0.016 4.016 18 C -0.187 4.187 19 C -0.021 4.021 20 C -0.214 4.214 21 C -0.158 4.158 22 C -0.169 4.169 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.004 0.996 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.040 -10.540 -0.698 20.048 hybrid contribution 0.639 1.653 0.927 2.000 sum 17.679 -8.887 0.228 19.789 Atomic orbital electron populations 1.69892 1.06100 1.26720 1.51334 1.24894 0.94698 0.98736 0.95021 0.86892 0.80260 0.84235 0.78515 1.20215 1.21266 1.19432 1.21045 0.88763 0.94654 1.49776 0.90165 1.20192 0.97041 0.84660 0.94523 1.62223 1.14247 1.16487 1.31132 1.22242 0.90384 0.96183 0.99176 1.22267 0.94073 0.97876 1.02728 1.21192 0.97923 0.95278 0.96323 1.22307 0.97462 1.02180 0.97076 1.22610 0.94793 0.82719 1.01532 1.87906 1.88579 1.24586 1.29453 1.22564 0.96119 0.97598 0.85309 1.22231 0.97481 0.97546 1.01453 1.22247 0.95807 0.94334 0.89752 1.23500 1.01161 0.96661 1.00047 1.22418 0.99795 0.95554 0.98036 1.22567 0.98716 0.97940 0.97641 1.22224 0.97400 0.93906 1.01498 0.92741 0.99611 0.96149 0.91657 0.95298 0.89235 0.91110 0.91645 0.90794 0.90472 0.93508 0.89100 0.93521 0.89231 0.91068 0.90927 0.89592 0.89044 0.92607 0.91903 0.92524 0.92479 0.91291 0.92323 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 21.57 27.37 -169.99 -4.65 16.92 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.43 6.69 56.52 0.38 -6.05 16 7 C -0.50 -14.28 8.99 -34.44 -0.31 -14.59 16 8 H 0.08 2.49 8.02 -52.48 -0.42 2.06 16 9 C 0.16 3.90 3.68 -4.97 -0.02 3.89 16 10 N -0.52 -10.47 4.27 -226.73 -0.97 -11.44 16 11 C 0.05 0.79 4.31 -3.82 -0.02 0.77 16 12 C -0.13 -1.75 2.88 -26.73 -0.08 -1.83 16 13 C -0.09 -0.98 2.27 -90.43 -0.21 -1.18 16 14 C -0.15 -1.72 5.11 -26.59 -0.14 -1.85 16 15 C 0.06 0.62 6.84 37.20 0.25 0.88 16 16 O -0.39 -4.53 10.76 -35.23 -0.38 -4.91 16 17 C 0.06 0.58 6.84 37.21 0.25 0.83 16 18 C -0.15 -1.46 5.42 -26.59 -0.14 -1.61 16 19 C 0.09 1.61 2.69 -66.59 -0.18 1.43 16 20 C -0.18 -2.66 5.29 -25.03 -0.13 -2.79 16 21 C -0.12 -1.52 6.72 -24.70 -0.17 -1.69 16 22 C -0.13 -1.67 6.12 -25.07 -0.15 -1.82 16 23 C -0.11 -1.81 5.77 -25.62 -0.15 -1.95 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H -0.01 -0.34 7.45 -51.93 -0.39 -0.73 16 26 H 0.02 0.50 7.03 -51.93 -0.37 0.13 16 27 H 0.07 1.08 6.21 -51.93 -0.32 0.76 16 28 H 0.03 0.47 6.02 -51.93 -0.31 0.16 16 29 H 0.09 1.14 2.24 -51.93 -0.12 1.03 16 30 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.89 6.61 -51.93 -0.34 0.54 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 1.86 7.12 -51.93 -0.37 1.49 16 41 H 0.09 1.32 3.45 -51.93 -0.18 1.14 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.81 6.03 -51.93 -0.31 0.50 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.07 1.28 7.15 -51.93 -0.37 0.90 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -30.25 344.85 -9.86 -40.11 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -8.55 Total: 0.68 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.27 Total: -19.65 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.20 Total: -38.34 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.38 Total: -4.91 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.65 Total: 16.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.25 -9.86 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202661101.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.154 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds