Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.48249 * 2 1 4 4 C 1.53101 * 109.40889 * 240.00713 * 2 1 3 5 5 C 1.53184 * 109.15344 * 297.49831 * 4 2 1 6 6 H 1.08993 * 109.54446 * 63.06490 * 5 4 2 7 7 C 1.53006 * 109.54003 * 183.24126 * 5 4 2 8 8 N 1.46902 * 109.46895 * 181.75993 * 7 5 4 9 9 C 1.46845 * 110.99847 * 52.06019 * 8 7 5 10 10 C 1.53036 * 109.52166 * 185.83991 * 9 8 7 11 11 C 1.53120 * 109.27619 * 300.81440 * 10 9 8 12 12 C 1.53116 * 109.15812 * 57.65801 * 11 10 9 13 13 H 1.09000 * 109.50815 * 62.28756 * 12 11 10 14 14 C 1.50699 * 109.53685 * 182.38191 * 12 11 10 15 15 H 1.08005 * 120.00162 * 119.82316 * 14 12 11 16 16 C 1.37882 * 120.00052 * 299.82623 * 14 12 11 17 17 N 1.31511 * 120.00052 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99848 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47184 * 59.99910 * 18 16 14 20 20 H 1.48500 * 109.46709 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46940 * 299.99643 * 18 16 14 22 22 C 1.46849 * 110.99704 * 176.26461 * 8 7 5 23 23 C 1.53176 * 109.11069 * 303.14774 * 5 4 2 24 24 C 1.53093 * 109.16144 * 56.94125 * 23 5 4 25 25 O 1.42902 * 109.47626 * 120.02210 * 2 1 3 26 26 H 1.08999 * 109.47208 * 299.98199 * 1 2 3 27 27 H 1.09003 * 109.46599 * 59.97538 * 1 2 3 28 28 H 1.09000 * 109.47558 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46781 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47165 * 300.01834 * 3 2 1 31 31 H 1.09000 * 109.47039 * 60.02206 * 3 2 1 32 32 H 1.08996 * 109.45704 * 177.64011 * 4 2 1 33 33 H 1.09000 * 109.60126 * 57.44073 * 4 2 1 34 34 H 1.09004 * 109.47122 * 61.75959 * 7 5 4 35 35 H 1.08996 * 109.46925 * 301.75874 * 7 5 4 36 36 H 1.09000 * 109.46540 * 305.85146 * 9 8 7 37 37 H 1.09004 * 109.46571 * 65.82224 * 9 8 7 38 38 H 1.09005 * 109.50356 * 180.88295 * 10 9 8 39 39 H 1.09000 * 109.53921 * 60.77841 * 10 9 8 40 40 H 1.09000 * 109.52439 * 297.75041 * 11 10 9 41 41 H 1.09005 * 109.57782 * 177.59065 * 11 10 9 42 42 H 0.97000 * 120.00059 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46332 * 294.17795 * 22 8 7 44 44 H 1.09000 * 109.46005 * 54.15877 * 22 8 7 45 45 H 1.08997 * 109.52230 * 176.84296 * 23 5 4 46 46 H 1.08998 * 109.52149 * 296.97370 * 23 5 4 47 47 H 1.08995 * 109.48141 * 62.37138 * 24 23 5 48 48 H 1.08993 * 109.48238 * 182.39935 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0388 -0.7218 -1.2506 5 6 1.5756 -2.1815 -1.2118 6 1 0.4868 -2.2194 -1.2413 7 6 2.1467 -2.9318 -2.4168 8 7 1.6675 -4.3204 -2.4010 9 6 0.2053 -4.3710 -2.2761 10 6 -0.2443 -5.8251 -2.1167 11 6 0.2106 -6.6314 -3.3364 12 6 1.7319 -6.5225 -3.4718 13 1 2.2076 -6.9552 -2.5917 14 6 2.1826 -7.2650 -4.7033 15 1 2.6976 -6.7383 -5.4932 16 6 1.9375 -8.6167 -4.8218 17 7 1.3109 -9.2581 -3.8598 18 14 2.4957 -9.5368 -6.3487 19 1 3.9706 -9.4266 -6.4815 20 1 2.1152 -10.9674 -6.2311 21 1 1.8453 -8.9480 -7.5468 22 6 2.1242 -5.0482 -3.5919 23 6 2.0763 -2.8323 0.0812 24 6 1.5643 -2.0284 1.2793 25 8 2.0065 -0.6741 1.1665 26 1 -0.3633 0.5135 0.8901 27 1 -0.3632 0.5142 -0.8898 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1303 1.4421 -0.0005 30 1 1.6768 1.9564 -0.8898 31 1 1.6774 1.9562 0.8902 32 1 3.1279 -0.6858 -1.2728 33 1 1.6391 -0.2365 -2.1410 34 1 3.2356 -2.9226 -2.3678 35 1 1.8202 -2.4452 -3.3359 36 1 -0.1048 -3.7973 -1.4027 37 1 -0.2506 -3.9458 -3.1703 38 1 -1.3310 -5.8637 -2.0398 39 1 0.1996 -6.2472 -1.2152 40 1 -0.2644 -6.2343 -4.2335 41 1 -0.0697 -7.6770 -3.2083 42 1 1.1388 -10.2091 -3.9430 43 1 1.6593 -4.6198 -4.4799 44 1 3.2080 -4.9664 -3.6740 45 1 1.7035 -3.8547 0.1425 46 1 3.1662 -2.8411 0.0863 47 1 0.4748 -2.0549 1.2960 48 1 1.9527 -2.4621 2.2008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207358184.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = -67.476475 kcal Electronic energy + Delta-G solvation = -23651.747301 eV Core-core repulsion = 20512.413098 eV Total energy + Delta-G solvation = -3139.334204 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.23221 -38.19300 -34.94013 -33.68056 -32.83544 -31.28134 -29.81195 -28.55806 -27.48189 -25.80223 -24.98211 -23.37420 -22.22520 -21.66457 -20.05539 -19.13101 -18.54463 -16.49793 -16.18499 -15.89808 -15.45893 -14.90290 -14.61856 -14.46310 -14.02087 -13.85282 -13.41194 -13.14776 -12.92524 -12.71684 -12.52469 -12.36479 -12.25866 -11.93766 -11.82965 -11.71213 -11.64605 -11.35724 -11.15765 -10.92533 -10.88248 -10.68797 -10.51599 -10.45698 -10.11966 -9.93573 -9.77865 -9.49565 -9.37255 -8.95404 -8.69119 -8.28451 -7.61334 -5.96114 -4.02249 3.32792 3.37481 3.39904 3.70491 4.33306 4.48855 4.67379 4.72386 4.82547 4.84157 5.08282 5.26233 5.33797 5.35223 5.38703 5.39752 5.48977 5.56743 5.61052 5.63432 5.69718 5.80292 5.81901 5.87643 5.91825 5.99730 6.03183 6.09439 6.12216 6.19485 6.28631 6.38834 6.43227 6.53111 6.53446 6.72928 6.76926 6.99195 7.23497 7.26023 7.42064 7.69725 7.76807 7.85625 8.10530 8.19053 8.50000 9.01661 9.61875 11.09836 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.038075 B = 0.003528 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.218633 B = 7933.679458 C = 8150.377904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.090 4.090 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.534 5.534 9 C 0.059 3.941 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.516 4.516 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.068 3.932 23 C -0.140 4.140 24 C 0.057 3.943 25 O -0.378 6.378 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.260 0.740 43 H 0.017 0.983 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.049 0.951 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.955 17.533 8.041 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.073 3.927 3 C -0.194 4.194 4 C -0.175 4.175 5 C -0.109 4.109 6 H 0.093 0.907 7 C -0.067 4.067 8 N -0.259 5.259 9 C -0.069 4.069 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.059 4.059 23 C -0.177 4.177 24 C -0.020 4.020 25 O -0.297 6.297 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.699 17.202 8.624 19.318 hybrid contribution -0.262 -0.332 -1.873 1.920 sum -1.961 16.871 6.752 18.277 Atomic orbital electron populations 1.22458 0.96018 1.02808 1.02411 1.21422 0.92922 0.92577 0.85766 1.21749 1.01906 0.93574 1.02189 1.22216 1.01829 0.95804 0.97626 1.21351 1.00512 0.93482 0.95542 0.90721 1.22097 0.99952 0.89171 0.95463 1.62037 1.10628 1.11403 1.41815 1.22112 0.88026 0.98044 0.98749 1.21673 0.98203 0.94393 1.01222 1.21645 0.98756 1.01160 0.93268 1.18643 0.92237 0.88141 0.97260 0.94794 1.21125 1.37117 0.93483 1.03719 0.92965 1.24931 0.95133 0.97556 0.96187 1.69880 1.41383 1.09179 1.32287 0.86695 0.79143 0.78753 0.83596 1.20307 1.21319 1.20410 1.22297 0.98599 0.97110 0.87881 1.22108 1.01791 1.00443 0.93402 1.22651 0.98542 0.81900 0.98873 1.87930 1.73851 1.25013 1.42933 0.92078 0.91681 0.91691 0.91874 0.91305 0.92025 0.91062 0.91292 0.91204 0.95788 0.92066 0.96224 0.93722 0.92151 0.95294 0.89185 0.93024 0.96468 0.92401 0.89450 0.91320 0.93260 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 7.93 37.16 0.29 -1.40 16 2 C 0.11 1.17 1.11 -90.57 -0.10 1.07 16 3 C -0.14 -1.19 8.85 37.16 0.33 -0.86 16 4 C -0.14 -1.49 4.21 -26.58 -0.11 -1.60 16 5 C -0.09 -1.13 1.47 -90.43 -0.13 -1.26 16 6 H 0.07 0.94 4.56 -51.93 -0.24 0.71 16 7 C 0.06 0.92 4.55 -3.82 -0.02 0.90 16 8 N -0.53 -9.66 4.16 -234.66 -0.98 -10.63 16 9 C 0.06 1.01 5.01 -3.84 -0.02 0.99 16 10 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 11 C -0.11 -2.61 5.03 -26.61 -0.13 -2.75 16 12 C 0.06 1.40 2.26 -91.69 -0.21 1.20 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.52 -14.21 8.56 -34.44 -0.29 -14.50 16 15 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 16 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 17 N -0.89 -25.41 11.36 55.43 0.63 -24.78 16 18 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 C 0.07 1.45 4.68 -3.83 -0.02 1.43 16 23 C -0.14 -1.77 5.18 -26.59 -0.14 -1.90 16 24 C 0.06 0.64 6.52 37.21 0.24 0.88 16 25 O -0.38 -4.65 10.24 -35.23 -0.36 -5.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.92 5.67 -51.93 -0.29 0.63 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 1.23 8.12 -51.93 -0.42 0.81 16 45 H 0.09 1.23 7.66 -51.93 -0.40 0.83 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 48 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -28.26 351.34 -9.99 -38.24 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.99 Total: -0.86 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.56 Total: -18.56 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.35 Total: -35.41 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.26 -9.99 -38.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207358184.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.233 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds