Wall clock time and date at job start Tue Mar 31 2020 05:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.48361 * 2 1 4 4 C 1.53095 * 109.47984 * 239.96205 * 2 1 3 5 5 C 1.53167 * 109.16477 * 297.62985 * 4 2 1 6 6 H 1.08996 * 109.61948 * 62.93078 * 5 4 2 7 7 C 1.52998 * 109.54352 * 183.15149 * 5 4 2 8 8 N 1.46908 * 109.47367 * 181.67212 * 7 5 4 9 9 C 1.46843 * 111.00195 * 176.27042 * 8 7 5 10 10 C 1.53037 * 109.52484 * 174.15938 * 9 8 7 11 11 C 1.53120 * 109.27461 * 59.17583 * 10 9 8 12 12 C 1.53115 * 109.16479 * 302.34450 * 11 10 9 13 13 H 1.09003 * 109.50588 * 297.71454 * 12 11 10 14 14 C 1.50699 * 109.53972 * 177.61450 * 12 11 10 15 15 H 1.08001 * 120.00379 * 240.17914 * 14 12 11 16 16 C 1.37875 * 119.99570 * 60.17775 * 14 12 11 17 17 N 1.31511 * 120.00450 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 120.00021 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47056 * 89.99847 * 18 16 14 20 20 H 1.48494 * 109.47400 * 209.99884 * 18 16 14 21 21 H 1.48498 * 109.46961 * 330.00558 * 18 16 14 22 22 C 1.46844 * 110.99789 * 52.05444 * 8 7 5 23 23 C 1.53180 * 109.03676 * 303.01594 * 5 4 2 24 24 C 1.53094 * 109.16020 * 56.98445 * 23 5 4 25 25 O 1.42904 * 109.41392 * 302.38577 * 24 23 5 26 26 H 1.08996 * 109.46723 * 299.98195 * 1 2 3 27 27 H 1.09002 * 109.46590 * 59.97864 * 1 2 3 28 28 H 1.08993 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47599 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46824 * 300.02568 * 3 2 1 31 31 H 1.09001 * 109.47250 * 60.02243 * 3 2 1 32 32 H 1.09001 * 109.51965 * 177.71745 * 4 2 1 33 33 H 1.09002 * 109.51715 * 57.53406 * 4 2 1 34 34 H 1.09005 * 109.47245 * 61.67563 * 7 5 4 35 35 H 1.08993 * 109.47435 * 301.66963 * 7 5 4 36 36 H 1.08998 * 109.46414 * 54.14020 * 9 8 7 37 37 H 1.09005 * 109.45294 * 294.17048 * 9 8 7 38 38 H 1.08997 * 109.50480 * 179.11376 * 10 9 8 39 39 H 1.08997 * 109.50453 * 299.24026 * 10 9 8 40 40 H 1.09008 * 109.52325 * 62.25171 * 11 10 9 41 41 H 1.08999 * 109.52342 * 182.44022 * 11 10 9 42 42 H 0.97003 * 120.00392 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.46613 * 305.85826 * 22 8 7 44 44 H 1.08996 * 109.46170 * 65.83505 * 22 8 7 45 45 H 1.09004 * 109.52254 * 176.88667 * 23 5 4 46 46 H 1.08992 * 109.52417 * 297.01361 * 23 5 4 47 47 H 1.08993 * 109.48380 * 62.37542 * 24 23 5 48 48 H 1.09008 * 109.48035 * 182.39549 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7225 -1.2495 5 6 1.5757 -2.1814 -1.2119 6 1 0.4868 -2.2194 -1.2413 7 6 2.1467 -2.9317 -2.4169 8 7 1.6675 -4.3204 -2.4011 9 6 2.1242 -5.0482 -3.5919 10 6 1.7320 -6.5226 -3.4719 11 6 0.2107 -6.6315 -3.3363 12 6 -0.2443 -5.8252 -2.1167 13 1 0.2002 -6.2469 -1.2152 14 6 -1.7465 -5.8784 -2.0092 15 1 -2.3235 -4.9664 -2.0503 16 6 -2.3842 -7.0915 -1.8583 17 7 -1.6816 -8.2020 -1.8077 18 14 -4.2463 -7.1577 -1.7256 19 1 -4.8345 -7.2984 -3.0819 20 1 -4.6422 -8.3205 -0.8914 21 1 -4.7427 -5.9065 -1.0984 22 6 0.2053 -4.3710 -2.2761 23 6 2.0765 -2.8322 0.0812 24 6 1.5645 -2.0283 1.2793 25 8 2.0066 -0.6741 1.1665 26 1 -0.3632 0.5135 0.8901 27 1 -0.3632 0.5142 -0.8898 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1304 1.4422 -0.0005 30 1 1.6767 1.9564 -0.8898 31 1 1.6775 1.9562 0.8902 32 1 3.1298 -0.6876 -1.2708 33 1 1.6421 -0.2360 -2.1398 34 1 3.2356 -2.9226 -2.3679 35 1 1.8202 -2.4452 -3.3359 36 1 3.2080 -4.9663 -3.6742 37 1 1.6592 -4.6198 -4.4798 38 1 2.0572 -7.0594 -4.3630 39 1 2.2076 -6.9552 -2.5917 40 1 -0.2644 -6.2343 -4.2335 41 1 -0.0696 -7.6768 -3.2071 42 1 -2.1303 -9.0555 -1.7020 43 1 -0.1047 -3.7973 -1.4026 44 1 -0.2506 -3.9460 -3.1702 45 1 1.7036 -3.8547 0.1425 46 1 3.1663 -2.8411 0.0862 47 1 0.4750 -2.0549 1.2960 48 1 1.9528 -2.4621 2.2008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207358185.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:44 Heat of formation + Delta-G solvation = -67.689422 kcal Electronic energy + Delta-G solvation = -23939.160348 eV Core-core repulsion = 20799.816910 eV Total energy + Delta-G solvation = -3139.343438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11688 -38.16927 -34.83533 -33.56042 -32.99005 -31.07295 -29.86447 -28.44105 -27.36353 -25.73244 -24.97986 -23.38535 -22.32966 -21.29384 -20.13555 -19.07504 -18.47796 -16.47728 -16.10130 -15.78476 -15.35103 -14.83803 -14.58237 -14.39677 -14.07363 -13.79167 -13.21765 -13.07624 -12.90854 -12.66168 -12.51525 -12.26217 -12.19844 -11.94817 -11.83242 -11.64372 -11.51403 -11.29802 -11.04037 -10.95503 -10.81892 -10.65468 -10.45416 -10.37749 -10.08032 -9.84099 -9.82028 -9.42799 -9.27574 -8.96791 -8.66956 -8.29835 -7.61215 -5.97071 -4.03231 3.30246 3.37366 3.39947 3.82482 4.35754 4.48476 4.78336 4.83340 4.93505 4.94924 5.20201 5.32990 5.38412 5.49733 5.51691 5.52533 5.58434 5.66349 5.71892 5.73683 5.75342 5.80708 5.87786 5.93712 6.00919 6.07462 6.11871 6.12296 6.22138 6.28760 6.30052 6.43272 6.50127 6.54612 6.62458 6.73477 6.78536 7.00301 7.23382 7.38398 7.42203 7.69889 7.76071 7.85718 8.09347 8.18480 8.49170 9.00905 9.61134 11.08852 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.004873 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.002506 B = 5744.700216 C = 6698.235091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.092 4.092 6 H 0.081 0.919 7 C 0.063 3.937 8 N -0.536 5.536 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.111 4.111 12 C 0.056 3.944 13 H 0.033 0.967 14 C -0.514 4.514 15 H 0.052 0.948 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.888 3.112 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.063 3.937 23 C -0.139 4.139 24 C 0.056 3.944 25 O -0.379 6.379 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.045 0.955 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.015 0.985 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.053 0.947 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.039 13.923 1.164 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.194 4.194 4 C -0.173 4.173 5 C -0.110 4.110 6 H 0.099 0.901 7 C -0.065 4.065 8 N -0.260 5.260 9 C -0.064 4.064 10 C -0.155 4.155 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.051 0.949 14 C -0.553 4.553 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.063 4.063 23 C -0.176 4.176 24 C -0.021 4.021 25 O -0.298 6.298 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.334 13.584 1.727 16.030 hybrid contribution -1.572 0.106 -0.999 1.866 sum 6.761 13.690 0.728 15.286 Atomic orbital electron populations 1.22467 0.95845 1.03181 1.02357 1.21410 0.93051 0.92443 0.85750 1.21746 1.01723 0.93712 1.02172 1.22198 1.01477 0.95934 0.97696 1.21352 1.01142 0.93226 0.95308 0.90132 1.22064 0.99351 0.89259 0.95807 1.62030 1.13520 1.11392 1.39069 1.21996 0.98213 0.95732 0.90451 1.21667 0.99912 0.93692 1.00189 1.21653 0.90445 1.04457 0.98328 1.18653 0.94659 0.88237 0.94769 0.94852 1.21141 0.91664 0.92603 1.49882 0.92983 1.24920 0.97862 0.95784 0.95173 1.69889 1.34880 0.97689 1.50211 0.86661 0.86195 0.77575 0.77947 1.20811 1.21234 1.20001 1.22391 0.84083 1.01235 0.98636 1.22095 1.01227 1.00839 0.93470 1.22659 0.98945 0.81670 0.98781 1.87912 1.73837 1.25144 1.42950 0.92084 0.91722 0.91362 0.92006 0.91369 0.92033 0.91296 0.91420 0.91674 0.95915 0.92588 0.96081 0.93642 0.92108 0.95294 0.89189 0.93082 0.91813 0.96675 0.89162 0.91708 0.92902 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 7.94 37.16 0.29 -1.77 16 2 C 0.11 1.32 1.11 -90.57 -0.10 1.22 16 3 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 4 C -0.13 -1.59 4.21 -26.60 -0.11 -1.70 16 5 C -0.09 -1.27 1.47 -90.44 -0.13 -1.41 16 6 H 0.08 1.23 4.56 -51.93 -0.24 1.00 16 7 C 0.06 0.95 4.55 -3.82 -0.02 0.93 16 8 N -0.54 -9.67 4.16 -234.67 -0.98 -10.65 16 9 C 0.06 1.13 5.46 -3.84 -0.02 1.11 16 10 C -0.12 -2.28 6.09 -26.65 -0.16 -2.45 16 11 C -0.11 -2.62 5.03 -26.61 -0.13 -2.75 16 12 C 0.06 1.37 2.26 -91.69 -0.21 1.17 16 13 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 14 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 15 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.19 11.36 55.43 0.63 -24.57 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.06 1.32 4.23 -3.83 -0.02 1.30 16 23 C -0.14 -1.96 5.18 -26.59 -0.14 -2.10 16 24 C 0.06 0.73 6.51 37.21 0.24 0.98 16 25 O -0.38 -5.14 10.24 -35.23 -0.36 -5.50 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.87 4.98 -51.93 -0.26 0.61 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.69 8.14 -51.92 -0.42 0.26 16 41 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.30 5.67 -51.93 -0.29 1.00 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 1.47 7.66 -51.93 -0.40 1.07 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.70 6.34 -51.93 -0.33 0.37 16 48 H 0.09 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -27.87 351.34 -9.99 -37.86 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.99 Total: 0.47 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -0.56 Total: -19.03 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.35 Total: -35.22 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.50 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.87 -9.99 -37.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207358185.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.833 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds