Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47920 * 2 1 4 4 C 1.53089 * 109.47982 * 239.96111 * 2 1 3 5 5 C 1.53181 * 109.15979 * 182.40876 * 4 2 1 6 6 H 1.08998 * 109.61960 * 297.07296 * 5 4 2 7 7 C 1.52998 * 109.54162 * 176.84778 * 5 4 2 8 8 N 1.46898 * 109.47200 * 65.68176 * 7 5 4 9 9 C 1.46846 * 110.99957 * 75.90445 * 8 7 5 10 10 C 1.53038 * 109.52447 * 185.84104 * 9 8 7 11 11 C 1.53121 * 109.31071 * 300.80045 * 10 9 8 12 12 C 1.53207 * 109.11460 * 57.63498 * 11 10 9 13 13 H 1.09000 * 109.52624 * 62.33862 * 12 11 10 14 14 C 1.50700 * 109.49194 * 182.42401 * 12 11 10 15 15 H 1.08000 * 120.00143 * 119.82098 * 14 12 11 16 16 C 1.37888 * 119.99821 * 299.82357 * 14 12 11 17 17 N 1.31511 * 119.99822 * 180.02562 * 16 14 12 18 18 Si 1.86796 * 120.00005 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47251 * 89.99995 * 18 16 14 20 20 H 1.48503 * 109.46886 * 210.00162 * 18 16 14 21 21 H 1.48505 * 109.47116 * 329.99728 * 18 16 14 22 22 C 1.46851 * 111.00209 * 200.11292 * 8 7 5 23 23 C 1.53179 * 109.03557 * 56.98379 * 5 4 2 24 24 C 1.53092 * 109.16231 * 303.01489 * 23 5 4 25 25 O 1.42906 * 109.47500 * 120.02047 * 2 1 3 26 26 H 1.08998 * 109.47620 * 299.97985 * 1 2 3 27 27 H 1.09009 * 109.47115 * 59.98088 * 1 2 3 28 28 H 1.09006 * 109.47229 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46779 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46520 * 300.01894 * 3 2 1 31 31 H 1.08998 * 109.47382 * 60.01923 * 3 2 1 32 32 H 1.08994 * 109.52342 * 62.50765 * 4 2 1 33 33 H 1.08996 * 109.52676 * 302.31194 * 4 2 1 34 34 H 1.09003 * 109.47312 * 305.68314 * 7 5 4 35 35 H 1.08998 * 109.47337 * 185.68144 * 7 5 4 36 36 H 1.08998 * 109.46221 * 65.82795 * 9 8 7 37 37 H 1.09002 * 109.46633 * 305.85477 * 9 8 7 38 38 H 1.09003 * 109.50430 * 60.75806 * 10 9 8 39 39 H 1.08997 * 109.50458 * 180.84005 * 10 9 8 40 40 H 1.08999 * 109.52423 * 177.58110 * 11 10 9 41 41 H 1.09000 * 109.52315 * 297.76723 * 11 10 9 42 42 H 0.97000 * 119.99920 * 179.97438 * 17 16 14 43 43 H 1.08995 * 109.46269 * 294.17426 * 22 8 7 44 44 H 1.09000 * 109.46142 * 54.15617 * 22 8 7 45 45 H 1.08991 * 109.52699 * 62.92391 * 23 5 4 46 46 H 1.09000 * 109.51986 * 183.04900 * 23 5 4 47 47 H 1.08998 * 109.47735 * 177.59210 * 24 23 5 48 48 H 1.08995 * 109.48081 * 297.61728 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7225 -1.2494 5 6 3.5711 -0.7711 -1.2119 6 1 3.9703 0.2428 -1.2414 7 6 4.0878 -1.5598 -2.4168 8 7 3.7671 -0.8326 -3.6522 9 6 4.6682 0.3119 -3.8381 10 6 4.2154 1.1277 -5.0512 11 6 4.2309 0.2357 -6.2956 12 6 3.3221 -0.9745 -6.0568 13 1 2.2973 -0.6360 -5.9045 14 6 3.3775 -1.8888 -7.2535 15 1 3.7199 -2.9067 -7.1400 16 6 2.9910 -1.4256 -8.4934 17 7 3.0388 -2.2236 -9.5377 18 14 2.3995 0.3353 -8.6900 19 1 3.5560 1.2146 -8.9973 20 1 1.4153 0.4059 -9.7998 21 1 1.7568 0.7853 -7.4291 22 6 3.8009 -1.7292 -4.8147 23 6 4.0176 -1.4601 0.0812 24 6 3.4307 -0.7091 1.2793 25 8 2.0065 -0.6741 1.1666 26 1 -0.3634 0.5135 0.8901 27 1 -0.3634 0.5142 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1302 1.4422 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6773 1.9563 0.8901 32 1 1.7149 -0.1847 -2.1398 33 1 1.6443 -1.7377 -1.2707 34 1 3.6134 -2.5410 -2.4393 35 1 5.1680 -1.6803 -2.3361 36 1 5.6839 -0.0483 -4.0014 37 1 4.6447 0.9410 -2.9482 38 1 3.2047 1.4998 -4.8828 39 1 4.8931 1.9686 -5.1978 40 1 3.8680 0.8013 -7.1538 41 1 5.2484 -0.1052 -6.4868 42 1 2.7665 -1.8980 -10.4098 43 1 4.8207 -2.0798 -4.9734 44 1 3.1473 -2.5827 -4.6342 45 1 3.6613 -2.4901 0.0869 46 1 5.1058 -1.4508 0.1419 47 1 3.7099 -1.2200 2.2007 48 1 3.8194 0.3090 1.2959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207358186.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = -63.179341 kcal Electronic energy + Delta-G solvation = -23857.510106 eV Core-core repulsion = 20718.362240 eV Total energy + Delta-G solvation = -3139.147866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18775 -38.38791 -35.07533 -33.60777 -32.95881 -31.68043 -30.28895 -28.47042 -27.39164 -26.10849 -24.93921 -23.71503 -22.19341 -21.54213 -20.28194 -19.16882 -18.84492 -16.71450 -16.25681 -15.93614 -15.68960 -15.17067 -14.65756 -14.35289 -14.19918 -13.78576 -13.46104 -13.36596 -13.13597 -12.91463 -12.59997 -12.36400 -12.30288 -12.17054 -12.00734 -11.81517 -11.67822 -11.57117 -11.12958 -11.08642 -11.04663 -10.73084 -10.57973 -10.43926 -10.05691 -10.00180 -9.91635 -9.68478 -9.42002 -9.04937 -8.91632 -8.50485 -7.79174 -6.06043 -4.04965 3.28829 3.40042 3.43337 3.70387 4.26618 4.43296 4.62280 4.77769 4.85792 4.86252 5.00820 5.17010 5.25375 5.27601 5.34738 5.44500 5.47676 5.51512 5.57279 5.63783 5.69199 5.72208 5.75320 5.77762 5.85773 5.91581 5.94964 5.99993 6.03593 6.13190 6.16801 6.24172 6.28895 6.32746 6.37860 6.46820 6.50025 6.61876 6.81821 6.84992 7.21289 7.25307 7.43148 7.63529 7.66771 7.88482 8.53434 8.97303 9.56949 11.07326 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025535 B = 0.004267 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.250807 B = 6561.053934 C = 6778.594396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 C -0.177 4.177 4 C -0.125 4.125 5 C -0.083 4.083 6 H 0.071 0.929 7 C 0.061 3.939 8 N -0.539 5.539 9 C 0.064 3.936 10 C -0.119 4.119 11 C -0.122 4.122 12 C 0.021 3.979 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.888 3.112 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.078 3.922 23 C -0.152 4.152 24 C 0.062 3.938 25 O -0.378 6.378 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.263 0.737 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 6.340 20.470 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.070 3.930 3 C -0.234 4.234 4 C -0.163 4.163 5 C -0.102 4.102 6 H 0.090 0.910 7 C -0.067 4.067 8 N -0.263 5.263 9 C -0.064 4.064 10 C -0.157 4.157 11 C -0.160 4.160 12 C 0.002 3.998 13 H 0.053 0.947 14 C -0.552 4.552 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.541 5.541 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.226 1.226 21 H -0.188 1.188 22 C -0.049 4.049 23 C -0.190 4.190 24 C -0.015 4.015 25 O -0.298 6.298 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.106 0.894 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.090 6.412 20.445 21.427 hybrid contribution 0.905 0.700 -0.635 1.309 sum 0.815 7.112 19.810 21.063 Atomic orbital electron populations 1.21746 0.92657 1.02767 1.02229 1.21561 0.94585 0.91128 0.85744 1.22428 1.01834 0.96678 1.02475 1.22099 0.94993 1.01480 0.97718 1.21214 0.96120 0.99555 0.93274 0.91040 1.22092 0.97760 0.97075 0.89820 1.61939 1.51928 1.09850 1.02591 1.22001 0.93619 0.92951 0.97867 1.21648 1.00975 0.97536 0.95534 1.22035 1.01187 0.97602 0.95146 1.19165 0.95152 0.92714 0.92804 0.94705 1.21015 1.44171 0.99024 0.91019 0.91028 1.24984 0.94901 0.97389 0.95822 1.69901 1.48455 1.35958 0.99809 0.86822 0.78282 0.85524 0.77491 1.20774 1.22647 1.18827 1.22088 0.98910 0.94521 0.89382 1.22233 1.00698 1.00743 0.95316 1.22500 0.81624 0.99389 0.97989 1.87934 1.20644 1.77589 1.43593 0.92276 0.90965 0.91890 0.92064 0.91306 0.92381 0.89428 0.91528 0.91115 0.95258 0.95592 0.92052 0.91898 0.92972 0.93606 0.92649 0.92713 0.95735 0.91570 0.91074 0.91307 0.89379 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.85 37.16 0.33 -1.07 16 2 C 0.11 1.21 1.11 -90.57 -0.10 1.11 16 3 C -0.18 -1.78 7.94 37.16 0.29 -1.49 16 4 C -0.13 -1.54 4.06 -26.59 -0.11 -1.65 16 5 C -0.08 -0.97 2.02 -90.44 -0.18 -1.15 16 6 H 0.07 0.85 5.19 -51.93 -0.27 0.58 16 7 C 0.06 0.84 4.40 -3.83 -0.02 0.82 16 8 N -0.54 -8.94 4.14 -234.68 -0.97 -9.91 16 9 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 10 C -0.12 -2.07 6.09 -26.65 -0.16 -2.23 16 11 C -0.12 -2.63 4.74 -26.56 -0.13 -2.75 16 12 C 0.02 0.49 1.85 -91.65 -0.17 0.32 16 13 H 0.03 0.86 7.20 -51.93 -0.37 0.49 16 14 C -0.51 -14.37 9.14 -34.44 -0.31 -14.69 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.89 22.14 24.36 -169.99 -4.14 18.00 16 19 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 20 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 22 C 0.08 1.56 4.65 -3.83 -0.02 1.54 16 23 C -0.15 -1.53 5.42 -26.59 -0.14 -1.67 16 24 C 0.06 0.60 6.52 37.21 0.24 0.85 16 25 O -0.38 -4.54 10.24 -35.23 -0.36 -4.90 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.21 7.87 -51.93 -0.41 0.80 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 35 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.84 6.65 -51.93 -0.35 0.49 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 1.05 3.37 -51.93 -0.18 0.87 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.05 0.45 6.34 -51.93 -0.33 0.12 16 LS Contribution 346.33 15.07 5.22 5.22 Total: -1.00 -29.78 346.33 -8.98 -38.76 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -8.91 Total: -1.07 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -0.59 Total: -19.15 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.20 Total: -36.86 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.36 Total: -4.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.78 -8.98 -38.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207358186.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.415 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds