Wall clock time and date at job start Tue Mar 31 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.48365 * 2 1 4 4 C 1.53106 * 109.48240 * 240.05200 * 2 1 3 5 5 C 1.53178 * 109.15442 * 182.49764 * 4 2 1 6 6 H 1.08996 * 109.54459 * 296.93357 * 5 4 2 7 7 C 1.53004 * 109.53974 * 176.76067 * 5 4 2 8 8 N 1.46901 * 109.47031 * 176.58691 * 7 5 4 9 9 C 1.46839 * 111.00211 * 293.81576 * 8 7 5 10 10 C 1.53042 * 109.52391 * 174.15781 * 9 8 7 11 11 C 1.53122 * 109.27529 * 59.17955 * 10 9 8 12 12 C 1.53118 * 109.16017 * 302.34588 * 11 10 9 13 13 H 1.08994 * 109.50528 * 297.71277 * 12 11 10 14 14 C 1.50706 * 109.49813 * 177.59674 * 12 11 10 15 15 H 1.08003 * 119.99328 * 239.99990 * 14 12 11 16 16 C 1.37874 * 120.00412 * 59.99961 * 14 12 11 17 17 N 1.31514 * 119.99603 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 120.00185 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46887 * 90.00433 * 18 16 14 20 20 H 1.48492 * 109.47100 * 210.00018 * 18 16 14 21 21 H 1.48501 * 109.47150 * 330.00562 * 18 16 14 22 22 C 1.46844 * 110.99858 * 169.60636 * 8 7 5 23 23 C 1.53172 * 109.11085 * 56.85441 * 5 4 2 24 24 C 1.53099 * 109.16029 * 303.05739 * 23 5 4 25 25 O 1.42905 * 109.47873 * 120.02283 * 2 1 3 26 26 H 1.09003 * 109.46990 * 299.97510 * 1 2 3 27 27 H 1.08994 * 109.46691 * 59.97653 * 1 2 3 28 28 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47470 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47006 * 300.02714 * 3 2 1 31 31 H 1.08998 * 109.46904 * 60.02166 * 3 2 1 32 32 H 1.09000 * 109.59455 * 62.55455 * 4 2 1 33 33 H 1.08995 * 109.45487 * 302.36178 * 4 2 1 34 34 H 1.08994 * 109.47435 * 296.59012 * 7 5 4 35 35 H 1.09005 * 109.46914 * 56.59373 * 7 5 4 36 36 H 1.09001 * 109.46640 * 294.17891 * 9 8 7 37 37 H 1.09003 * 109.46289 * 54.14496 * 9 8 7 38 38 H 1.08996 * 109.50195 * 179.12044 * 10 9 8 39 39 H 1.08998 * 109.50323 * 299.20332 * 10 9 8 40 40 H 1.09004 * 109.51878 * 62.25530 * 11 10 9 41 41 H 1.08999 * 109.52072 * 182.43865 * 11 10 9 42 42 H 0.97001 * 120.00036 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.46153 * 305.85639 * 22 8 7 44 44 H 1.08998 * 109.46789 * 65.82719 * 22 8 7 45 45 H 1.09003 * 109.52827 * 62.96441 * 23 5 4 46 46 H 1.08998 * 109.52287 * 183.09320 * 23 5 4 47 47 H 1.09004 * 109.47902 * 177.58977 * 24 23 5 48 48 H 1.08993 * 109.48642 * 297.61709 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0407 -0.7206 -1.2507 5 6 3.5711 -0.7711 -1.2120 6 1 3.9703 0.2428 -1.2416 7 6 4.0878 -1.5598 -2.4170 8 7 5.5566 -1.5380 -2.4232 9 6 6.0618 -0.1791 -2.6562 10 6 7.5854 -0.1681 -2.5118 11 6 8.1962 -1.1405 -3.5247 12 6 7.6170 -2.5386 -3.2914 13 1 7.8896 -2.8837 -2.2941 14 6 8.1685 -3.4899 -4.3220 15 1 7.4986 -4.0048 -4.9947 16 6 9.5281 -3.7028 -4.4062 17 7 10.3438 -3.0753 -3.5873 18 14 10.2116 -4.8824 -5.6832 19 1 10.5011 -4.1412 -6.9369 20 1 11.4629 -5.4960 -5.1707 21 1 9.2139 -5.9478 -5.9571 22 6 6.0926 -2.4808 -3.4133 23 6 4.0176 -1.4602 0.0810 24 6 3.4308 -0.7092 1.2792 25 8 2.0066 -0.6741 1.1665 26 1 -0.3633 0.5135 0.8902 27 1 -0.3632 0.5142 -0.8897 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6767 1.9564 -0.8898 31 1 1.6774 1.9561 0.8902 32 1 1.7164 -0.1818 -2.1410 33 1 1.6432 -1.7352 -1.2728 34 1 3.7399 -2.5907 -2.3527 35 1 3.7138 -1.1067 -3.3352 36 1 5.7900 0.1421 -3.6617 37 1 5.6229 0.5016 -1.9267 38 1 7.9615 0.8374 -2.7001 39 1 7.8574 -0.4752 -1.5019 40 1 7.9569 -0.8110 -4.5358 41 1 9.2782 -1.1683 -3.3961 42 1 11.3003 -3.2253 -3.6462 43 1 5.6761 -3.4719 -3.2336 44 1 5.8207 -2.1489 -4.4153 45 1 3.6613 -2.4903 0.0867 46 1 5.1059 -1.4509 0.1417 47 1 3.7100 -1.2202 2.2007 48 1 3.8194 0.3089 1.2960 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207358187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:49 Heat of formation + Delta-G solvation = -69.907790 kcal Electronic energy + Delta-G solvation = -23606.476145 eV Core-core repulsion = 20467.036512 eV Total energy + Delta-G solvation = -3139.439633 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16942 -38.16575 -34.91196 -33.65841 -32.88450 -31.25021 -29.83218 -28.53046 -27.46732 -25.81130 -24.95365 -23.32081 -22.19251 -21.64027 -20.11566 -19.10797 -18.57137 -16.48198 -16.17647 -15.87560 -15.38250 -14.90060 -14.58187 -14.46443 -14.00300 -13.89558 -13.40375 -13.11089 -12.90170 -12.74376 -12.50212 -12.35950 -12.25095 -11.95223 -11.81204 -11.76380 -11.62526 -11.31039 -11.14069 -10.94480 -10.83029 -10.67085 -10.54724 -10.42344 -10.12317 -9.90263 -9.80680 -9.49863 -9.36667 -8.95481 -8.69000 -8.28943 -7.62007 -5.96341 -4.02459 3.31151 3.38041 3.41108 3.72376 4.32747 4.48811 4.69345 4.74579 4.84200 4.86738 5.10899 5.29147 5.33651 5.37378 5.40956 5.41460 5.50440 5.59177 5.61912 5.64067 5.70589 5.82261 5.84214 5.86080 5.92742 6.01442 6.04713 6.09408 6.13171 6.21953 6.30570 6.41603 6.44037 6.53183 6.54864 6.72850 6.76890 6.98859 7.23482 7.28122 7.42167 7.69628 7.76884 7.85598 8.10259 8.19123 8.49849 9.01611 9.61772 11.09533 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.003530 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.858625 B = 7930.582549 C = 8084.057918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.112 3.888 3 C -0.179 4.179 4 C -0.137 4.137 5 C -0.085 4.085 6 H 0.072 0.928 7 C 0.061 3.939 8 N -0.535 5.535 9 C 0.062 3.938 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.068 3.932 23 C -0.139 4.139 24 C 0.057 3.943 25 O -0.378 6.378 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.057 0.943 38 H 0.044 0.956 39 H 0.060 0.940 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.259 0.741 43 H 0.058 0.942 44 H 0.017 0.983 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 8.313 6.873 19.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.073 3.927 3 C -0.237 4.237 4 C -0.175 4.175 5 C -0.104 4.104 6 H 0.090 0.910 7 C -0.067 4.067 8 N -0.259 5.259 9 C -0.066 4.066 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.059 4.059 23 C -0.177 4.177 24 C -0.019 4.019 25 O -0.298 6.298 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.035 0.965 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.674 8.087 7.504 19.167 hybrid contribution 0.392 -0.240 -1.821 1.878 sum -15.282 7.847 5.683 18.094 Atomic orbital electron populations 1.21750 0.92800 1.02702 1.02169 1.21420 0.94371 0.91104 0.85787 1.22454 1.02315 0.96542 1.02367 1.22220 0.96240 1.01463 0.97596 1.21248 0.93756 0.99854 0.95505 0.90953 1.22084 0.89231 0.99892 0.95527 1.61970 1.05412 1.07285 1.51245 1.22059 0.96859 0.89846 0.97856 1.21671 0.93356 0.98987 1.01460 1.21650 1.03225 0.95155 0.94809 1.18653 0.87244 0.92822 0.97601 0.94798 1.21160 0.91887 1.24852 1.17434 0.92914 1.24931 0.97108 0.95958 0.95849 1.69891 1.03152 1.42334 1.37347 0.86633 0.78512 0.81328 0.81735 1.20819 1.21249 1.19977 1.22297 0.99245 0.93640 0.90685 1.22093 1.02518 0.99638 0.93411 1.22652 0.80744 0.99660 0.98893 1.87928 1.21483 1.77436 1.42923 0.92036 0.91325 0.91889 0.91642 0.91712 0.92108 0.91342 0.91115 0.91261 0.95768 0.96162 0.92430 0.93713 0.92157 0.95283 0.89142 0.93089 0.92396 0.96494 0.91511 0.89343 0.89204 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.85 37.16 0.33 -0.88 16 2 C 0.11 1.18 1.11 -90.56 -0.10 1.08 16 3 C -0.18 -1.70 7.93 37.16 0.29 -1.41 16 4 C -0.14 -1.50 4.21 -26.58 -0.11 -1.61 16 5 C -0.08 -1.07 1.87 -90.44 -0.17 -1.24 16 6 H 0.07 0.92 4.78 -51.93 -0.25 0.67 16 7 C 0.06 0.91 4.37 -3.82 -0.02 0.89 16 8 N -0.53 -9.63 4.12 -234.67 -0.97 -10.60 16 9 C 0.06 1.07 5.30 -3.84 -0.02 1.05 16 10 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 11 C -0.11 -2.61 5.02 -26.61 -0.13 -2.75 16 12 C 0.06 1.39 2.27 -91.69 -0.21 1.18 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.15 8.56 -34.44 -0.29 -14.44 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.36 11.35 55.43 0.63 -24.73 16 18 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.07 1.45 4.68 -3.84 -0.02 1.43 16 23 C -0.14 -1.79 5.26 -26.59 -0.14 -1.93 16 24 C 0.06 0.66 6.52 37.21 0.24 0.90 16 25 O -0.38 -4.72 10.24 -35.23 -0.36 -5.08 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.66 4.98 -51.93 -0.26 0.40 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.04 7.98 -51.93 -0.41 0.63 16 35 H 0.02 0.36 8.12 -51.93 -0.42 -0.06 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.88 6.16 -51.93 -0.32 0.56 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.28 7.82 -51.93 -0.41 0.87 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.05 0.54 6.34 -51.93 -0.33 0.21 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -28.17 352.43 -10.03 -38.20 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -9.02 Total: -0.90 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -0.60 Total: -18.49 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.34 Total: -35.33 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.36 Total: -5.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.17 -10.03 -38.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207358187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.705 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds