Wall clock time and date at job start Tue Mar 31 2020 05:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.49082 * 2 1 4 4 C 1.53087 * 109.48219 * 120.02889 * 2 1 3 5 5 C 1.53176 * 109.21483 * 177.55988 * 4 2 1 6 6 H 1.09002 * 109.54688 * 62.92285 * 5 4 2 7 7 C 1.53004 * 109.54177 * 183.18339 * 5 4 2 8 8 N 1.46901 * 109.47110 * 181.93231 * 7 5 4 9 9 C 1.46845 * 110.99992 * 52.00348 * 8 7 5 10 10 C 1.53043 * 109.52063 * 185.84144 * 9 8 7 11 11 C 1.53123 * 109.27571 * 300.81916 * 10 9 8 12 12 C 1.50697 * 109.51854 * 177.56062 * 11 10 9 13 13 H 1.08003 * 120.00147 * 275.48223 * 12 11 10 14 14 C 1.37882 * 119.99811 * 95.48283 * 12 11 10 15 15 N 1.31519 * 119.99918 * 174.88961 * 14 12 11 16 16 Si 1.86799 * 119.99950 * 354.89004 * 14 12 11 17 17 H 1.48503 * 109.47132 * 94.76962 * 16 14 12 18 18 H 1.48501 * 109.46785 * 214.76533 * 16 14 12 19 19 H 1.48494 * 109.47073 * 334.76586 * 16 14 12 20 20 C 1.53116 * 109.16147 * 57.66018 * 11 10 9 21 21 C 1.46853 * 110.99973 * 176.21831 * 8 7 5 22 22 C 1.53184 * 109.03149 * 303.11136 * 5 4 2 23 23 C 1.53087 * 109.21493 * 56.88849 * 22 5 4 24 24 O 1.42899 * 109.41328 * 302.42488 * 23 22 5 25 25 H 1.08999 * 109.46824 * 299.97566 * 1 2 3 26 26 H 1.08999 * 109.46753 * 59.97110 * 1 2 3 27 27 H 1.08990 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46839 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.46642 * 300.02931 * 3 2 1 30 30 H 1.08998 * 109.46923 * 60.02579 * 3 2 1 31 31 H 1.09003 * 109.52560 * 297.49805 * 4 2 1 32 32 H 1.09003 * 109.52216 * 57.62194 * 4 2 1 33 33 H 1.08996 * 109.47070 * 301.93169 * 7 5 4 34 34 H 1.09000 * 109.47233 * 61.93434 * 7 5 4 35 35 H 1.08996 * 109.46278 * 305.85580 * 9 8 7 36 36 H 1.08996 * 109.46100 * 65.82839 * 9 8 7 37 37 H 1.08996 * 109.49777 * 180.88305 * 10 9 8 38 38 H 1.08992 * 109.53841 * 60.78267 * 10 9 8 39 39 H 1.08996 * 109.52342 * 297.75280 * 11 10 9 40 40 H 0.96996 * 120.00098 * 179.97438 * 15 14 12 41 41 H 1.08997 * 109.50200 * 182.40228 * 20 11 10 42 42 H 1.09004 * 109.53788 * 62.29998 * 20 11 10 43 43 H 1.08999 * 109.45479 * 294.17127 * 21 8 7 44 44 H 1.08994 * 109.46274 * 54.13942 * 21 8 7 45 45 H 1.09004 * 109.46781 * 296.97993 * 22 5 4 46 46 H 1.09006 * 109.57673 * 176.85930 * 22 5 4 47 47 H 1.08997 * 109.48303 * 182.43752 * 23 22 5 48 48 H 1.09003 * 109.48988 * 62.41012 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 3.5711 -0.7722 1.2129 6 1 3.9699 0.2418 1.2422 7 6 4.0864 -1.5616 2.4180 8 7 5.5553 -1.5693 2.4066 9 6 6.0877 -0.2062 2.2843 10 6 7.6092 -0.2635 2.1294 11 6 8.2157 -0.9609 3.3503 12 6 9.7083 -1.0738 3.1758 13 1 10.1259 -1.8988 2.6177 14 6 10.5408 -0.1238 3.7286 15 7 11.8457 -0.2748 3.6633 16 14 9.8153 1.3777 4.5704 17 1 9.7113 1.1250 6.0301 18 1 10.6937 2.5512 4.3326 19 1 8.4643 1.6506 4.0177 20 6 7.6088 -2.3604 3.4827 21 6 6.0874 -2.2424 3.5984 22 6 4.0176 -1.4601 -0.0810 23 6 3.4307 -0.7093 -1.2791 24 8 2.0066 -0.6742 -1.1664 25 1 -0.3633 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8897 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1305 1.4420 -0.0005 29 1 1.6769 1.9564 -0.8897 30 1 1.6777 1.9562 0.8902 31 1 1.7149 -0.1843 2.1399 32 1 1.6434 -1.7371 1.2715 33 1 3.7326 -1.0941 3.3368 34 1 3.7173 -2.5859 2.3661 35 1 5.6516 0.2769 1.4100 36 1 5.8349 0.3639 3.1782 37 1 8.0057 0.7490 2.0544 38 1 7.8631 -0.8214 1.2282 39 1 7.9956 -0.3820 4.2472 40 1 12.4313 0.3937 4.0518 41 1 8.0050 -2.8459 4.3746 42 1 7.8621 -2.9523 2.6031 43 1 5.8345 -1.6626 4.4861 44 1 5.6509 -3.2379 3.6785 45 1 3.6613 -2.4902 -0.0864 46 1 5.1059 -1.4508 -0.1428 47 1 3.7100 -1.2203 -2.2005 48 1 3.8192 0.3090 -1.2961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207361881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:11 Heat of formation + Delta-G solvation = -66.573014 kcal Electronic energy + Delta-G solvation = -23697.673028 eV Core-core repulsion = 20558.378001 eV Total energy + Delta-G solvation = -3139.295027 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.31904 -38.42448 -35.11022 -33.74011 -32.92330 -31.33001 -30.11226 -28.73619 -27.53536 -26.75080 -24.61346 -23.29334 -22.44793 -21.66714 -20.20588 -19.22070 -18.70122 -16.83420 -16.41635 -15.97122 -15.73366 -15.11805 -14.58614 -14.41778 -14.26747 -13.96601 -13.48900 -13.22355 -13.03883 -12.96935 -12.62965 -12.51520 -12.37435 -12.09693 -11.94691 -11.92196 -11.71939 -11.41407 -11.27031 -11.21921 -10.93777 -10.77474 -10.63317 -10.52648 -10.32059 -10.03942 -9.77395 -9.55663 -9.39671 -9.15664 -8.90666 -8.47638 -7.89091 -6.05361 -4.02692 3.27398 3.36815 3.39471 3.64807 4.16747 4.43602 4.58488 4.62790 4.71955 4.75679 4.99565 5.17343 5.23709 5.28783 5.31820 5.34554 5.41487 5.47947 5.53735 5.56497 5.57133 5.65574 5.73154 5.76255 5.80845 5.85995 5.91182 5.96617 5.98278 6.02578 6.11842 6.17060 6.25072 6.28922 6.40799 6.44359 6.54579 6.79187 6.92269 7.01058 7.20297 7.35000 7.44428 7.58444 7.64507 7.82495 8.57457 9.01453 9.59005 11.08462 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.028505 B = 0.003931 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.065177 B = 7120.867714 C = 7324.975349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.113 3.887 3 C -0.181 4.181 4 C -0.136 4.136 5 C -0.092 4.092 6 H 0.077 0.923 7 C 0.062 3.938 8 N -0.531 5.531 9 C 0.050 3.950 10 C -0.108 4.108 11 C 0.015 3.985 12 C -0.507 4.507 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.874 3.126 17 H -0.280 1.280 18 H -0.289 1.289 19 H -0.262 1.262 20 C -0.099 4.099 21 C 0.057 3.943 22 C -0.140 4.140 23 C 0.056 3.944 24 O -0.377 6.377 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.026 0.974 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.024 0.976 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.980 0.913 -5.780 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.073 3.927 3 C -0.238 4.238 4 C -0.174 4.174 5 C -0.110 4.110 6 H 0.095 0.905 7 C -0.066 4.066 8 N -0.255 5.255 9 C -0.078 4.078 10 C -0.146 4.146 11 C -0.004 4.004 12 C -0.545 4.545 13 H 0.090 0.910 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.702 3.298 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.187 1.187 20 C -0.137 4.137 21 C -0.071 4.071 22 C -0.177 4.177 23 C -0.020 4.020 24 O -0.297 6.297 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.760 0.650 -6.266 22.653 hybrid contribution -0.246 1.473 1.488 2.108 sum -22.006 2.123 -4.778 22.619 Atomic orbital electron populations 1.21748 0.92720 1.02696 1.02257 1.21421 0.94434 0.91128 0.85692 1.22463 1.02326 0.96498 1.02499 1.22206 0.95956 1.01479 0.97770 1.21361 0.94207 1.00096 0.95377 0.90498 1.22103 0.88804 0.99884 0.95858 1.61974 1.05154 1.18359 1.40052 1.22325 0.98059 0.88334 0.99055 1.21895 0.90644 1.00577 1.01487 1.19166 0.95993 0.92000 0.93247 1.21037 0.88602 1.10795 1.34018 0.90975 1.25070 0.94675 0.97845 0.95657 1.69921 1.02663 1.35413 1.46179 0.86898 0.79591 0.83286 0.80004 1.20660 1.21575 1.18690 1.21592 0.90899 0.99877 1.01306 1.22189 0.97822 0.97326 0.89764 1.22113 1.02480 0.99713 0.93438 1.22651 0.80783 0.99778 0.98817 1.87931 1.21421 1.77384 1.42955 0.91303 0.91961 0.91892 0.91646 0.91984 0.91664 0.91313 0.91087 0.95616 0.91147 0.91730 0.96177 0.92906 0.91975 0.95772 0.92811 0.92424 0.92047 0.95899 0.92061 0.91405 0.89375 0.89078 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 2 C 0.11 1.12 1.11 -90.57 -0.10 1.02 16 3 C -0.18 -1.67 7.94 37.16 0.29 -1.38 16 4 C -0.14 -1.36 4.20 -26.60 -0.11 -1.47 16 5 C -0.09 -1.06 1.47 -90.43 -0.13 -1.19 16 6 H 0.08 0.94 4.55 -51.93 -0.24 0.70 16 7 C 0.06 0.80 4.55 -3.82 -0.02 0.78 16 8 N -0.53 -8.43 4.18 -234.67 -0.98 -9.41 16 9 C 0.05 0.85 5.04 -3.83 -0.02 0.83 16 10 C -0.11 -2.24 5.16 -26.65 -0.14 -2.37 16 11 C 0.02 0.35 1.70 -91.65 -0.16 0.19 16 12 C -0.51 -14.10 8.87 -34.44 -0.31 -14.40 16 13 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 16 Si 0.87 21.54 26.62 -169.99 -4.52 17.01 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.26 -6.13 6.07 56.52 0.34 -5.79 16 20 C -0.10 -1.98 5.36 -26.65 -0.14 -2.13 16 21 C 0.06 0.95 5.46 -3.83 -0.02 0.93 16 22 C -0.14 -1.64 5.18 -26.59 -0.14 -1.77 16 23 C 0.06 0.61 6.52 37.20 0.24 0.85 16 24 O -0.38 -4.45 10.24 -35.23 -0.36 -4.81 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.65 4.98 -51.93 -0.26 0.39 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.99 5.70 -51.93 -0.30 0.69 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.14 7.13 -51.93 -0.37 0.77 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.58 5.59 -51.93 -0.29 0.29 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.92 8.12 -51.93 -0.42 0.49 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16 47 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.05 0.53 6.34 -51.93 -0.33 0.20 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -29.71 348.92 -9.33 -39.04 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -8.98 Total: -1.14 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.51 Total: -19.04 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.21 Total: -36.33 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.36 Total: -4.81 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.52 Total: 17.01 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.71 -9.33 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207361881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.530 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds