Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.48903 * 2 1 4 4 C 1.53090 * 109.48172 * 120.02831 * 2 1 3 5 5 C 1.53168 * 109.16383 * 62.37697 * 4 2 1 6 6 H 1.09002 * 109.54603 * 297.11404 * 5 4 2 7 7 C 1.53002 * 109.54666 * 176.84692 * 5 4 2 8 8 N 1.46894 * 109.47473 * 175.44390 * 7 5 4 9 9 C 1.46856 * 110.99959 * 294.21117 * 8 7 5 10 10 C 1.53033 * 109.51995 * 174.16043 * 9 8 7 11 11 C 1.53119 * 109.28120 * 59.18283 * 10 9 8 12 12 C 1.50705 * 109.52259 * 182.43866 * 11 10 9 13 13 H 1.07995 * 119.99932 * 119.68107 * 12 11 10 14 14 C 1.37880 * 119.99974 * 299.67760 * 12 11 10 15 15 N 1.31510 * 119.99882 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99769 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46917 * 90.00173 * 16 14 12 18 18 H 1.48506 * 109.46802 * 209.99736 * 16 14 12 19 19 H 1.48497 * 109.47126 * 329.99804 * 16 14 12 20 20 C 1.53118 * 109.15890 * 302.34109 * 11 10 9 21 21 C 1.46847 * 111.00416 * 170.00026 * 8 7 5 22 22 C 1.53177 * 109.03858 * 56.98247 * 5 4 2 23 23 C 1.53096 * 109.16164 * 303.01870 * 22 5 4 24 24 O 1.42897 * 109.48405 * 239.97409 * 2 1 3 25 25 H 1.08997 * 109.47316 * 299.96795 * 1 2 3 26 26 H 1.08992 * 109.47308 * 59.97474 * 1 2 3 27 27 H 1.09003 * 109.46401 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47143 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47122 * 300.03039 * 3 2 1 30 30 H 1.09006 * 109.46531 * 60.02758 * 3 2 1 31 31 H 1.09002 * 109.52149 * 302.46742 * 4 2 1 32 32 H 1.09007 * 109.52293 * 182.28245 * 4 2 1 33 33 H 1.09003 * 109.47153 * 295.44451 * 7 5 4 34 34 H 1.08998 * 109.46856 * 55.44200 * 7 5 4 35 35 H 1.09003 * 109.46115 * 294.17686 * 9 8 7 36 36 H 1.08994 * 109.46169 * 54.14679 * 9 8 7 37 37 H 1.09004 * 109.50967 * 299.23596 * 10 9 8 38 38 H 1.09007 * 109.53497 * 179.13829 * 10 9 8 39 39 H 1.08995 * 109.57817 * 62.27759 * 11 10 9 40 40 H 0.96996 * 119.99800 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.50352 * 297.71393 * 20 11 10 42 42 H 1.09002 * 109.53807 * 177.62045 * 20 11 10 43 43 H 1.09003 * 109.46342 * 305.86124 * 21 8 7 44 44 H 1.09003 * 109.46026 * 65.81913 * 21 8 7 45 45 H 1.09003 * 109.52410 * 183.11691 * 22 5 4 46 46 H 1.08994 * 109.57348 * 62.95306 * 22 5 4 47 47 H 1.08993 * 109.48033 * 177.59323 * 23 22 5 48 48 H 1.09001 * 109.48095 * 297.62604 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5759 -2.1812 1.2121 6 1 0.4868 -2.2179 1.2408 7 6 2.1469 -2.9314 2.4172 8 7 1.6133 -4.2998 2.4399 9 6 0.1643 -4.2958 2.6788 10 6 -0.3789 -5.7208 2.5516 11 6 0.3227 -6.6223 3.5712 12 6 -0.1648 -8.0392 3.4103 13 1 0.5327 -8.8253 3.1617 14 6 -1.5014 -8.3318 3.5805 15 7 -1.9267 -9.5684 3.4405 16 14 -2.7079 -6.9719 4.0098 17 1 -3.2518 -6.3803 2.7610 18 1 -3.8207 -7.5341 4.8167 19 1 -2.0106 -5.9205 4.7929 20 6 1.8341 -6.5708 3.3312 21 6 2.3133 -5.1212 3.4358 22 6 2.0767 -2.8322 -0.0809 23 6 1.5647 -2.0284 -1.2791 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3634 0.5133 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1305 1.4421 -0.0005 29 1 1.6769 1.9565 -0.8897 30 1 1.6776 1.9561 0.8903 31 1 1.6421 -0.2357 2.1398 32 1 3.1299 -0.6873 1.2709 33 1 3.2338 -2.9665 2.3417 34 1 1.8629 -2.4154 3.3343 35 1 -0.0374 -3.9183 3.6813 36 1 -0.3230 -3.6544 1.9445 37 1 -0.1898 -6.0939 1.5450 38 1 -1.4519 -5.7204 2.7439 39 1 0.1020 -6.2735 4.5800 40 1 -2.8671 -9.7742 3.5599 41 1 2.0581 -6.9573 2.3369 42 1 2.3430 -7.1774 4.0804 43 1 3.3868 -5.0793 3.2514 44 1 2.1015 -4.7399 4.4347 45 1 1.7039 -3.8546 -0.1421 46 1 3.1665 -2.8408 -0.0870 47 1 1.9532 -2.4622 -2.2004 48 1 0.4751 -2.0550 -1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207361883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -61.835117 kcal Electronic energy + Delta-G solvation = -23743.759155 eV Core-core repulsion = 20604.669579 eV Total energy + Delta-G solvation = -3139.089576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27135 -38.45885 -35.14693 -33.73227 -32.99360 -31.31883 -30.22152 -28.71615 -27.52603 -26.75185 -24.58404 -23.19746 -22.61771 -21.67082 -20.27976 -19.20781 -18.80986 -16.68695 -16.41940 -15.97557 -15.78599 -15.10137 -14.58603 -14.52440 -14.37735 -13.86164 -13.60619 -13.24428 -13.05762 -12.99380 -12.72645 -12.46430 -12.35352 -12.10250 -12.00487 -11.93258 -11.71862 -11.56982 -11.38077 -11.22230 -10.86846 -10.79809 -10.56353 -10.52998 -10.08850 -10.02617 -9.88250 -9.59851 -9.42931 -9.05257 -8.89617 -8.50307 -7.92038 -6.05017 -4.03074 3.26575 3.36882 3.39228 3.65568 4.13563 4.42247 4.60021 4.63970 4.72181 4.77047 5.00697 5.18754 5.25096 5.29311 5.32342 5.35675 5.42078 5.49364 5.51430 5.54202 5.57739 5.63302 5.73159 5.73792 5.80394 5.86401 5.90511 5.93780 5.97368 6.03206 6.12056 6.13195 6.19448 6.30056 6.34915 6.41754 6.48513 6.75739 6.85595 6.94477 7.21143 7.24174 7.44969 7.54600 7.66155 7.81284 8.56245 8.99935 9.58184 11.08641 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004138 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.740002 B = 6764.624702 C = 7116.328043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.113 3.887 3 C -0.137 4.137 4 C -0.136 4.136 5 C -0.088 4.088 6 H 0.075 0.925 7 C 0.061 3.939 8 N -0.531 5.531 9 C 0.054 3.946 10 C -0.115 4.115 11 C 0.013 3.987 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.068 3.932 15 N -0.903 5.903 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.268 1.268 20 C -0.096 4.096 21 C 0.057 3.943 22 C -0.139 4.139 23 C 0.056 3.944 24 O -0.378 6.378 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.023 0.977 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.024 0.976 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 20.576 -5.666 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.073 3.927 3 C -0.194 4.194 4 C -0.174 4.174 5 C -0.106 4.106 6 H 0.093 0.907 7 C -0.067 4.067 8 N -0.255 5.255 9 C -0.074 4.074 10 C -0.153 4.153 11 C -0.006 4.006 12 C -0.547 4.547 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.542 5.542 16 Si 0.718 3.282 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.177 4.177 23 C -0.020 4.020 24 O -0.297 6.297 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.413 20.325 -6.241 22.517 hybrid contribution -1.186 0.817 1.262 1.915 sum 6.227 21.142 -4.979 22.596 Atomic orbital electron populations 1.22464 0.95929 1.02929 1.02482 1.21418 0.92983 0.92567 0.85696 1.21753 1.01840 0.93577 1.02253 1.22211 1.01688 0.95775 0.97769 1.21271 1.00739 0.93298 0.95309 0.90673 1.22094 0.99396 0.89181 0.96004 1.61902 1.04027 1.09902 1.49707 1.22228 0.87655 0.99259 0.98225 1.22004 0.98309 0.92683 1.02306 1.19176 0.91737 0.95748 0.93899 1.21075 0.94008 0.92160 1.47474 0.90882 1.25025 0.98331 0.95166 0.94773 1.69900 1.15536 1.18385 1.50373 0.86851 0.80702 0.82391 0.78286 1.20604 1.22608 1.19316 1.21485 0.97788 0.92482 1.01582 1.22170 0.97201 0.95434 0.92207 1.22101 1.01407 1.00654 0.93510 1.22653 0.98742 0.81832 0.98806 1.87929 1.73801 1.25027 1.42964 0.91668 0.92003 0.91609 0.91904 0.91969 0.91306 0.91314 0.91121 0.91161 0.95484 0.95910 0.91946 0.91315 0.93543 0.96165 0.92760 0.91817 0.92469 0.91939 0.95785 0.89339 0.91564 0.89117 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 7.94 37.16 0.29 -1.41 16 2 C 0.11 1.13 1.11 -90.57 -0.10 1.03 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.14 -1.37 4.21 -26.60 -0.11 -1.48 16 5 C -0.09 -1.02 1.88 -90.44 -0.17 -1.19 16 6 H 0.08 0.93 4.71 -51.93 -0.24 0.69 16 7 C 0.06 0.79 4.36 -3.83 -0.02 0.78 16 8 N -0.53 -8.45 4.18 -234.67 -0.98 -9.44 16 9 C 0.05 0.95 5.30 -3.83 -0.02 0.93 16 10 C -0.12 -2.48 4.84 -26.65 -0.13 -2.61 16 11 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 12 C -0.51 -14.31 9.14 -34.44 -0.31 -14.63 16 13 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 15 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 16 Si 0.89 22.10 24.37 -169.99 -4.14 17.95 16 17 H -0.28 -6.74 6.89 56.52 0.39 -6.35 16 18 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 19 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 20 C -0.10 -1.90 5.32 -26.65 -0.14 -2.04 16 21 C 0.06 0.95 5.46 -3.84 -0.02 0.93 16 22 C -0.14 -1.64 5.27 -26.59 -0.14 -1.78 16 23 C 0.06 0.62 6.52 37.21 0.24 0.86 16 24 O -0.38 -4.49 10.24 -35.23 -0.36 -4.85 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.67 4.97 -51.93 -0.26 0.41 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.86 7.99 -51.93 -0.41 0.45 16 34 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.99 6.13 -51.93 -0.32 0.67 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.05 1.06 3.38 -51.93 -0.18 0.88 16 39 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.91 8.02 -51.93 -0.42 0.50 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 1.17 7.85 -51.93 -0.41 0.77 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.05 0.55 6.34 -51.93 -0.33 0.22 16 LS Contribution 345.65 15.07 5.21 5.21 Total: -1.00 -29.94 345.65 -8.94 -38.88 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -8.88 Total: -1.31 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.56 Total: -19.39 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: -0.21 Total: -36.49 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.36 Total: -4.85 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.94 -8.94 -38.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207361883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.960 kcal (2) G-P(sol) polarization free energy of solvation -29.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds