Wall clock time and date at job start Tue Mar 31 2020 05:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.48903 * 2 1 4 4 C 1.53090 * 109.48172 * 120.02831 * 2 1 3 5 5 C 1.53168 * 109.16383 * 62.37697 * 4 2 1 6 6 H 1.09002 * 109.54603 * 297.11404 * 5 4 2 7 7 C 1.53002 * 109.54666 * 176.84692 * 5 4 2 8 8 N 1.46894 * 109.47473 * 175.44390 * 7 5 4 9 9 C 1.46856 * 110.99959 * 294.21117 * 8 7 5 10 10 C 1.53033 * 109.51995 * 174.16043 * 9 8 7 11 11 C 1.53119 * 109.28120 * 59.18283 * 10 9 8 12 12 C 1.50705 * 109.52259 * 182.43866 * 11 10 9 13 13 H 1.07995 * 119.99932 * 119.68107 * 12 11 10 14 14 C 1.37880 * 119.99974 * 299.67760 * 12 11 10 15 15 N 1.31510 * 119.99882 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99769 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46917 * 90.00173 * 16 14 12 18 18 H 1.48506 * 109.46802 * 209.99736 * 16 14 12 19 19 H 1.48497 * 109.47126 * 329.99804 * 16 14 12 20 20 C 1.53118 * 109.15890 * 302.34109 * 11 10 9 21 21 C 1.46847 * 111.00416 * 170.00026 * 8 7 5 22 22 C 1.53177 * 109.03858 * 56.98247 * 5 4 2 23 23 C 1.53096 * 109.16164 * 303.01870 * 22 5 4 24 24 O 1.42897 * 109.48405 * 239.97409 * 2 1 3 25 25 H 1.08997 * 109.47316 * 299.96795 * 1 2 3 26 26 H 1.08992 * 109.47308 * 59.97474 * 1 2 3 27 27 H 1.09003 * 109.46401 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47143 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47122 * 300.03039 * 3 2 1 30 30 H 1.09006 * 109.46531 * 60.02758 * 3 2 1 31 31 H 1.09002 * 109.52149 * 302.46742 * 4 2 1 32 32 H 1.09007 * 109.52293 * 182.28245 * 4 2 1 33 33 H 1.09003 * 109.47153 * 295.44451 * 7 5 4 34 34 H 1.08998 * 109.46856 * 55.44200 * 7 5 4 35 35 H 1.09003 * 109.46115 * 294.17686 * 9 8 7 36 36 H 1.08994 * 109.46169 * 54.14679 * 9 8 7 37 37 H 1.09004 * 109.50967 * 299.23596 * 10 9 8 38 38 H 1.09007 * 109.53497 * 179.13829 * 10 9 8 39 39 H 1.08995 * 109.57817 * 62.27759 * 11 10 9 40 40 H 0.96996 * 119.99800 * 180.02562 * 15 14 12 41 41 H 1.09000 * 109.50352 * 297.71393 * 20 11 10 42 42 H 1.09002 * 109.53807 * 177.62045 * 20 11 10 43 43 H 1.09003 * 109.46342 * 305.86124 * 21 8 7 44 44 H 1.09003 * 109.46026 * 65.81913 * 21 8 7 45 45 H 1.09003 * 109.52410 * 183.11691 * 22 5 4 46 46 H 1.08994 * 109.57348 * 62.95306 * 22 5 4 47 47 H 1.08993 * 109.48033 * 177.59323 * 23 22 5 48 48 H 1.09001 * 109.48095 * 297.62604 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4424 0.0000 4 6 2.0406 -0.7222 1.2495 5 6 1.5759 -2.1812 1.2121 6 1 0.4868 -2.2179 1.2408 7 6 2.1469 -2.9314 2.4172 8 7 1.6133 -4.2998 2.4399 9 6 0.1643 -4.2958 2.6788 10 6 -0.3789 -5.7208 2.5516 11 6 0.3227 -6.6223 3.5712 12 6 -0.1648 -8.0392 3.4103 13 1 0.5327 -8.8253 3.1617 14 6 -1.5014 -8.3318 3.5805 15 7 -1.9267 -9.5684 3.4405 16 14 -2.7079 -6.9719 4.0098 17 1 -3.2518 -6.3803 2.7610 18 1 -3.8207 -7.5341 4.8167 19 1 -2.0106 -5.9205 4.7929 20 6 1.8341 -6.5708 3.3312 21 6 2.3133 -5.1212 3.4358 22 6 2.0767 -2.8322 -0.0809 23 6 1.5647 -2.0284 -1.2791 24 8 2.0066 -0.6741 -1.1664 25 1 -0.3634 0.5133 0.8902 26 1 -0.3633 0.5142 -0.8897 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1305 1.4421 -0.0005 29 1 1.6769 1.9565 -0.8897 30 1 1.6776 1.9561 0.8903 31 1 1.6421 -0.2357 2.1398 32 1 3.1299 -0.6873 1.2709 33 1 3.2338 -2.9665 2.3417 34 1 1.8629 -2.4154 3.3343 35 1 -0.0374 -3.9183 3.6813 36 1 -0.3230 -3.6544 1.9445 37 1 -0.1898 -6.0939 1.5450 38 1 -1.4519 -5.7204 2.7439 39 1 0.1020 -6.2735 4.5800 40 1 -2.8671 -9.7742 3.5599 41 1 2.0581 -6.9573 2.3369 42 1 2.3430 -7.1774 4.0804 43 1 3.3868 -5.0793 3.2514 44 1 2.1015 -4.7399 4.4347 45 1 1.7039 -3.8546 -0.1421 46 1 3.1665 -2.8408 -0.0870 47 1 1.9532 -2.4622 -2.2004 48 1 0.4751 -2.0550 -1.2958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207361883.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:12 Heat of formation + Delta-G solvation = -80.418009 kcal Electronic energy + Delta-G solvation = -23744.564970 eV Core-core repulsion = 20604.669579 eV Total energy + Delta-G solvation = -3139.895391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15051 -39.81232 -36.48859 -34.74590 -34.40301 -33.04846 -31.72362 -29.67922 -28.25009 -28.13850 -25.95024 -24.28343 -24.02231 -23.15886 -21.32704 -20.45025 -20.03988 -18.83330 -17.46677 -16.98685 -16.81037 -16.25946 -16.01462 -15.64128 -15.43302 -15.28534 -14.91181 -14.72359 -14.56997 -14.20245 -13.95980 -13.55172 -13.38509 -13.27977 -13.05539 -12.94460 -12.83250 -12.66556 -12.50953 -12.48078 -12.16880 -12.09518 -11.98832 -11.75726 -11.64617 -11.48699 -11.27745 -10.96972 -10.87098 -10.78941 -10.59958 -10.25518 -9.16340 -8.30073 -6.32983 1.27994 1.33171 1.43904 2.31505 2.88237 2.96871 3.05358 3.70531 3.85154 3.87105 3.99961 4.09523 4.15731 4.21017 4.24826 4.36289 4.37800 4.48883 4.50322 4.56604 4.64985 4.70178 4.71434 4.72992 4.80704 4.83680 4.86585 4.89143 4.92125 4.96019 4.97883 5.02604 5.10859 5.19869 5.20789 5.25642 5.27362 5.36320 5.42708 5.53001 5.53734 5.67917 5.78443 6.19834 6.30350 6.33194 6.41748 6.74287 7.32201 8.87283 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026415 B = 0.004138 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.740002 B = 6764.624702 C = 7116.328043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.084 4.084 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.538 5.538 9 C 0.063 3.937 10 C -0.112 4.112 11 C 0.012 3.988 12 C -0.517 4.517 13 H 0.030 0.970 14 C 0.009 3.991 15 N -0.953 5.953 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.299 1.299 19 H -0.249 1.249 20 C -0.092 4.092 21 C 0.066 3.934 22 C -0.134 4.134 23 C 0.057 3.943 24 O -0.393 6.393 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.026 0.974 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.036 0.964 39 H 0.016 0.984 40 H 0.265 0.735 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.029 0.971 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.667 24.102 -5.318 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.067 3.933 3 C -0.193 4.193 4 C -0.168 4.168 5 C -0.102 4.102 6 H 0.088 0.912 7 C -0.063 4.063 8 N -0.263 5.263 9 C -0.065 4.065 10 C -0.150 4.150 11 C -0.007 4.007 12 C -0.555 4.555 13 H 0.049 0.951 14 C -0.187 4.187 15 N -0.594 5.594 16 Si 0.779 3.221 17 H -0.191 1.191 18 H -0.227 1.227 19 H -0.173 1.173 20 C -0.130 4.130 21 C -0.062 4.062 22 C -0.172 4.172 23 C -0.019 4.019 24 O -0.313 6.313 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.048 0.952 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.115 0.885 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.742 23.875 -5.899 25.782 hybrid contribution -1.196 -0.378 1.116 1.679 sum 6.546 23.497 -4.782 24.856 Atomic orbital electron populations 1.22452 0.95544 1.02479 1.03170 1.21622 0.93383 0.93274 0.85069 1.21770 1.01793 0.92557 1.03133 1.22168 1.01766 0.94554 0.98351 1.21232 1.00292 0.94231 0.94487 0.91225 1.22152 0.99966 0.87294 0.96866 1.61853 1.03114 1.11906 1.49448 1.22071 0.88814 0.96481 0.99093 1.21849 0.97569 0.95000 1.00599 1.19144 0.94270 0.93053 0.94201 1.21427 0.93543 0.93946 1.46554 0.95116 1.25909 1.00452 0.97585 0.94790 1.70058 1.16131 1.20870 1.52292 0.85797 0.78036 0.79584 0.78716 1.19087 1.22731 1.17338 1.21385 0.95497 0.95441 1.00671 1.22054 0.98539 0.92820 0.92761 1.22020 1.01170 0.99799 0.94205 1.22646 0.98784 0.81704 0.98804 1.87920 1.74158 1.25195 1.43981 0.90383 0.91968 0.92580 0.92009 0.92001 0.89568 0.89947 0.91019 0.90059 0.94614 0.95612 0.89898 0.92663 0.94595 0.96633 0.92644 0.93154 0.92770 0.89396 0.95248 0.91089 0.91760 0.88530 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 7.94 71.98 0.57 -2.34 16 2 C 0.11 1.83 1.11 -10.76 -0.01 1.81 16 3 C -0.14 -1.86 8.85 71.98 0.64 -1.23 16 4 C -0.13 -2.18 4.21 30.68 0.13 -2.05 16 5 C -0.08 -1.70 1.88 -10.68 -0.02 -1.72 16 6 H 0.07 1.51 4.71 -2.39 -0.01 1.50 16 7 C 0.06 1.44 4.36 86.31 0.38 1.82 16 8 N -0.54 -15.69 4.18 -896.36 -3.75 -19.43 16 9 C 0.06 2.05 5.30 86.32 0.46 2.50 16 10 C -0.11 -4.69 4.84 30.64 0.15 -4.54 16 11 C 0.01 0.57 1.75 -11.46 -0.02 0.55 16 12 C -0.52 -30.01 9.14 25.60 0.23 -29.77 16 13 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 14 C 0.01 0.54 5.45 84.66 0.46 1.00 16 15 N -0.95 -60.67 13.96 21.45 0.30 -60.37 16 16 Si 0.95 45.61 24.37 68.60 1.67 47.28 16 17 H -0.26 -12.02 6.89 99.48 0.69 -11.33 16 18 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 19 H -0.25 -11.09 6.53 99.48 0.65 -10.45 16 20 C -0.09 -3.62 5.32 30.64 0.16 -3.46 16 21 C 0.07 2.01 5.46 86.32 0.47 2.48 16 22 C -0.13 -2.91 5.27 30.69 0.16 -2.75 16 23 C 0.06 1.17 6.52 72.01 0.47 1.63 16 24 O -0.39 -8.55 10.24 -148.98 -1.52 -10.07 16 25 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.02 4.97 -2.39 -0.01 1.01 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.67 7.99 -2.39 -0.02 1.65 16 34 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 2.37 6.13 -2.39 -0.01 2.36 16 37 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.57 3.38 -2.38 -0.01 1.56 16 39 H 0.02 0.74 7.19 -2.39 -0.02 0.72 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.27 8.02 -2.39 -0.02 2.25 16 44 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 1.80 7.85 -2.39 -0.02 1.78 16 46 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 48 H 0.05 1.04 6.34 -2.39 -0.02 1.02 16 Total: -1.00 -65.95 345.65 1.75 -64.20 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.82 Total: 14.46 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 4.23 Total: -36.06 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -3.45 Total: -79.81 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.52 Total: -10.07 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Total: -65.95 1.75 -64.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207361883.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.222 kcal (2) G-P(sol) polarization free energy of solvation -65.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds