Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.54263 * 2 1 4 4 N 1.46890 * 109.47322 * 301.88143 * 3 2 1 5 5 C 1.46903 * 111.00194 * 147.25317 * 4 3 2 6 6 C 1.50707 * 109.47208 * 184.26001 * 5 4 3 7 7 H 1.07994 * 119.99685 * 5.23719 * 6 5 4 8 8 C 1.37876 * 119.99600 * 185.23789 * 6 5 4 9 9 N 1.31514 * 119.99542 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00369 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47119 * 90.00051 * 10 8 6 12 12 H 1.48502 * 109.46844 * 210.00208 * 10 8 6 13 13 H 1.48501 * 109.47115 * 329.99874 * 10 8 6 14 14 C 1.46900 * 111.00155 * 271.21012 * 4 3 2 15 15 C 1.54266 * 110.03260 * 267.94095 * 14 4 3 16 16 C 1.54888 * 104.19909 * 217.10463 * 15 14 4 17 17 C 1.54888 * 102.74587 * 37.94553 * 16 15 14 18 18 C 1.53880 * 110.03255 * 150.77806 * 14 4 3 19 19 C 1.53177 * 109.53444 * 239.73993 * 2 1 3 20 20 C 1.53090 * 109.16253 * 297.09528 * 19 2 1 21 21 O 1.42902 * 109.42667 * 302.40809 * 20 19 2 22 22 C 1.42905 * 114.09627 * 61.14938 * 21 20 19 23 23 C 1.53089 * 109.41641 * 298.84345 * 22 21 20 24 24 H 1.09005 * 109.46936 * 299.81984 * 1 2 3 25 25 H 1.08998 * 109.47069 * 59.81987 * 1 2 3 26 26 H 1.09004 * 109.46849 * 179.82387 * 1 2 3 27 27 H 1.09003 * 109.47066 * 61.88318 * 3 2 1 28 28 H 1.09005 * 109.47210 * 181.88008 * 3 2 1 29 29 H 1.08997 * 109.47002 * 304.26250 * 5 4 3 30 30 H 1.08997 * 109.46959 * 64.26406 * 5 4 3 31 31 H 0.96999 * 119.99744 * 179.97438 * 9 8 6 32 32 H 1.08999 * 110.01740 * 29.38547 * 14 4 3 33 33 H 1.09006 * 110.48689 * 335.78340 * 15 14 4 34 34 H 1.09000 * 110.48764 * 98.42391 * 15 14 4 35 35 H 1.08999 * 110.75563 * 279.62947 * 16 15 14 36 36 H 1.08999 * 110.75661 * 156.25352 * 16 15 14 37 37 H 1.09008 * 110.48392 * 203.38135 * 17 16 15 38 38 H 1.08991 * 110.49018 * 80.73770 * 17 16 15 39 39 H 1.09003 * 110.02614 * 238.57000 * 18 14 4 40 40 H 1.08996 * 110.02938 * 359.97438 * 18 14 4 41 41 H 1.08991 * 109.51469 * 177.19626 * 19 2 1 42 42 H 1.08996 * 109.53424 * 57.00735 * 19 2 1 43 43 H 1.08997 * 109.48304 * 182.41749 * 20 19 2 44 44 H 1.09009 * 109.48012 * 62.39453 * 20 19 2 45 45 H 1.09004 * 109.47735 * 58.82990 * 22 21 20 46 46 H 1.09002 * 109.47934 * 178.84585 * 22 21 20 47 47 H 1.09002 * 109.52232 * 177.51267 * 23 22 21 48 48 H 1.08996 * 109.52142 * 297.64274 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 7 1.5163 2.1480 -1.1760 5 6 1.2894 3.5687 -0.8791 6 6 0.6544 4.2360 -2.0719 7 1 0.3632 3.6467 -2.9287 8 6 0.4452 5.5988 -2.0690 9 7 -0.1086 6.1811 -3.1101 10 14 0.9495 6.6182 -0.5872 11 1 2.3490 7.0838 -0.7598 12 1 0.0487 7.7923 -0.4644 13 1 0.8517 5.7887 0.6407 14 6 2.4112 1.9876 -2.3298 15 6 3.4224 3.1515 -2.3801 16 6 3.5869 3.4468 -3.8916 17 6 2.1501 3.2520 -4.4362 18 6 1.6022 2.0515 -3.6372 19 6 2.0422 -0.7275 -1.2469 20 6 1.5895 -2.1891 -1.1975 21 8 2.0736 -2.7963 0.0021 22 6 1.5895 -2.1872 1.2008 23 6 2.0425 -0.7257 1.2479 24 1 -0.3633 0.5111 0.8916 25 1 -0.3633 0.5166 -0.8883 26 1 -0.3633 -1.0277 -0.0032 27 1 1.7069 1.9462 0.9064 28 1 3.1313 1.4407 -0.0337 29 1 0.6280 3.6587 -0.0175 30 1 2.2419 4.0502 -0.6579 31 1 -0.2561 7.1398 -3.1080 32 1 2.9388 1.0362 -2.2633 33 1 3.0254 4.0245 -1.8618 34 1 4.3747 2.8486 -1.9447 35 1 4.2740 2.7365 -4.3514 36 1 3.9246 4.4709 -4.0506 37 1 2.1739 3.0222 -5.5016 38 1 1.5477 4.1410 -4.2501 39 1 1.7380 1.1313 -4.2056 40 1 0.5456 2.2010 -3.4155 41 1 3.1309 -0.6841 -1.2723 42 1 1.6369 -0.2506 -2.1393 43 1 1.9872 -2.7223 -2.0609 44 1 0.5004 -2.2330 -1.2132 45 1 0.5004 -2.2311 1.2165 46 1 1.9871 -2.7193 2.0651 47 1 1.6373 -0.2473 2.1396 48 1 3.1313 -0.6825 1.2741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207968234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = -33.964657 kcal Electronic energy + Delta-G solvation = -24759.167593 eV Core-core repulsion = 21621.286570 eV Total energy + Delta-G solvation = -3137.881022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07666 -38.49475 -35.55704 -33.41053 -32.29319 -31.06508 -28.26893 -28.05793 -27.80856 -26.74749 -24.75939 -23.52523 -22.02635 -21.36945 -19.74349 -18.52500 -18.24787 -17.03521 -15.99306 -15.91726 -15.24166 -15.14395 -14.77469 -14.29104 -14.13944 -14.01802 -13.61581 -13.28469 -13.10172 -12.40650 -12.27849 -12.18736 -11.77523 -11.68867 -11.48572 -11.21729 -11.12562 -10.98415 -10.84385 -10.58768 -10.48411 -10.36708 -10.22736 -10.16336 -10.01647 -9.89765 -9.82656 -9.57182 -9.37816 -9.07069 -8.79398 -8.51705 -7.23653 -6.02073 -3.97373 3.26294 3.35498 3.37790 3.94896 4.43258 4.62462 4.87721 4.99792 5.07992 5.15839 5.27948 5.32254 5.43129 5.46658 5.50170 5.56157 5.68418 5.73289 5.81764 5.84671 5.95078 6.03424 6.04830 6.07578 6.15987 6.26370 6.31987 6.34180 6.40420 6.44282 6.48494 6.58060 6.59303 6.65950 6.70656 6.80005 6.83967 6.94046 7.00827 7.24697 7.26558 7.31079 7.59396 7.69380 7.98709 8.18173 8.69956 9.10774 9.60303 11.08876 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021087 B = 0.005877 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.504508 B = 4762.810858 C = 5430.644186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.051 4.051 3 C 0.062 3.938 4 N -0.517 5.517 5 C 0.155 3.845 6 C -0.510 4.510 7 H 0.107 0.893 8 C 0.071 3.929 9 N -0.899 5.899 10 Si 0.861 3.139 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.270 1.270 14 C 0.092 3.908 15 C -0.164 4.164 16 C -0.111 4.111 17 C -0.126 4.126 18 C -0.104 4.104 19 C -0.144 4.144 20 C 0.059 3.941 21 O -0.389 6.389 22 C 0.062 3.938 23 C -0.147 4.147 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.022 0.978 30 H -0.007 1.007 31 H 0.261 0.739 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.038 0.962 38 H 0.107 0.893 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.556 -12.914 4.766 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 C -0.067 4.067 4 N -0.239 5.239 5 C 0.029 3.971 6 C -0.548 4.548 7 H 0.124 0.876 8 C -0.130 4.130 9 N -0.539 5.539 10 Si 0.689 3.311 11 H -0.206 1.206 12 H -0.214 1.214 13 H -0.195 1.195 14 C -0.017 4.017 15 C -0.202 4.202 16 C -0.149 4.149 17 C -0.164 4.164 18 C -0.142 4.142 19 C -0.182 4.182 20 C -0.018 4.018 21 O -0.308 6.308 22 C -0.014 4.014 23 C -0.185 4.185 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.088 0.912 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.154 -13.100 4.587 14.488 hybrid contribution 1.016 1.450 1.111 2.091 sum 5.170 -11.650 5.698 13.961 Atomic orbital electron populations 1.21817 0.93913 1.00027 1.03364 1.20512 0.96455 0.94675 0.93528 1.22097 0.96409 0.93504 0.94730 1.62179 1.44507 1.14185 1.03053 1.20406 0.94503 0.84150 0.98054 1.21540 1.38273 0.92432 1.02533 0.87555 1.24848 0.95249 0.97700 0.95221 1.69855 1.44389 1.10472 1.29184 0.87079 0.78598 0.80596 0.84801 1.20600 1.21413 1.19460 1.22319 0.91431 0.96221 0.91717 1.23249 0.97473 1.02125 0.97390 1.22238 0.97336 0.99547 0.95740 1.22554 0.96197 1.01218 0.96387 1.22218 1.02052 0.95944 0.93965 1.22385 1.00778 0.95119 0.99887 1.22670 0.98428 0.93707 0.86987 1.87873 1.72104 1.56808 1.14010 1.22547 0.98353 0.93091 0.87437 1.22242 1.01428 0.96051 0.98752 0.93383 0.90223 0.94072 0.92101 0.95277 0.96011 0.98997 0.92854 0.91737 0.87663 0.94578 0.93743 0.92838 0.94364 0.87444 0.94643 0.89276 0.92006 0.89049 0.89503 0.92980 0.93051 0.89610 0.91179 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 7.76 37.16 0.29 -1.59 16 2 C -0.05 -0.70 0.60 -154.32 -0.09 -0.79 16 3 C 0.06 1.00 4.21 -3.83 -0.02 0.98 16 4 N -0.52 -9.73 3.26 -226.74 -0.74 -10.47 16 5 C 0.15 3.47 3.13 -4.97 -0.02 3.45 16 6 C -0.51 -12.93 6.30 -34.44 -0.22 -13.15 16 7 H 0.11 2.83 3.55 -52.49 -0.19 2.64 16 8 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 9 N -0.90 -25.77 13.96 55.43 0.77 -24.99 16 10 Si 0.86 20.75 27.37 -169.99 -4.65 16.09 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.34 6.70 56.52 0.38 -5.96 16 14 C 0.09 1.65 1.59 -66.59 -0.11 1.55 16 15 C -0.16 -3.12 5.73 -25.07 -0.14 -3.27 16 16 C -0.11 -2.02 6.91 -24.74 -0.17 -2.20 16 17 C -0.13 -2.49 6.19 -25.07 -0.16 -2.64 16 18 C -0.10 -1.95 5.39 -25.61 -0.14 -2.09 16 19 C -0.14 -1.93 3.40 -26.59 -0.09 -2.02 16 20 C 0.06 0.71 6.57 37.20 0.24 0.96 16 21 O -0.39 -5.14 10.77 -35.23 -0.38 -5.51 16 22 C 0.06 0.70 6.57 37.20 0.24 0.95 16 23 C -0.15 -1.75 4.92 -26.59 -0.13 -1.88 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.08 1.29 7.55 -51.93 -0.39 0.90 16 26 H 0.04 0.51 5.01 -51.93 -0.26 0.25 16 27 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 28 H 0.03 0.47 7.77 -51.93 -0.40 0.07 16 29 H 0.02 0.52 7.37 -51.93 -0.38 0.13 16 30 H -0.01 -0.17 4.90 -51.93 -0.25 -0.42 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.07 4.99 -51.93 -0.26 0.81 16 33 H 0.11 2.32 4.11 -51.93 -0.21 2.10 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.11 2.57 6.00 -51.93 -0.31 2.26 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.90 5.84 -51.93 -0.30 1.59 16 41 H 0.06 0.85 7.63 -51.93 -0.40 0.46 16 42 H 0.09 1.32 6.00 -51.93 -0.31 1.01 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.61 6.60 -51.92 -0.34 0.27 16 45 H 0.05 0.55 6.61 -51.93 -0.34 0.21 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -26.82 332.26 -8.73 -35.55 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.14 Total: 4.25 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.60 Total: -19.93 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.03 Total: -35.46 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.65 Total: 16.09 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.82 -8.73 -35.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207968234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.585 kcal (2) G-P(sol) polarization free energy of solvation -26.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds