Wall clock time and date at job start Tue Mar 31 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 109.46785 * 2 1 4 4 C 1.46903 * 109.47128 * 119.99659 * 2 1 3 5 5 C 1.46900 * 109.47521 * 239.99792 * 2 1 3 6 6 C 1.52997 * 109.46915 * 63.50327 * 5 2 1 7 7 H 1.08998 * 109.47574 * 52.79205 * 6 5 2 8 8 C 1.50694 * 109.47075 * 172.79556 * 6 5 2 9 9 H 1.08010 * 120.00307 * 240.00146 * 8 6 5 10 10 C 1.37881 * 120.00327 * 59.99836 * 8 6 5 11 11 N 1.31512 * 119.99521 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 120.00362 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46866 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47373 * 119.99603 * 12 10 8 15 15 H 1.48497 * 109.46917 * 240.00207 * 12 10 8 16 16 O 1.42909 * 109.47294 * 292.79198 * 6 5 2 17 17 C 1.42898 * 114.00051 * 150.00212 * 16 6 5 18 18 C 1.52996 * 109.47098 * 180.02562 * 17 16 6 19 19 C 1.53002 * 109.47141 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47077 * 179.97438 * 19 18 17 21 21 C 1.36343 * 125.63601 * 269.69403 * 20 19 18 22 22 C 1.34851 * 108.21881 * 179.83284 * 21 20 19 23 23 C 1.40888 * 107.41496 * 0.42245 * 22 21 20 24 24 C 1.34846 * 107.41947 * 359.73809 * 23 22 21 25 25 H 1.09003 * 109.47242 * 49.39339 * 1 2 3 26 26 H 1.09007 * 109.47131 * 169.39318 * 1 2 3 27 27 H 1.09001 * 109.47124 * 289.39092 * 1 2 3 28 28 H 1.08990 * 109.47274 * 59.99843 * 3 2 1 29 29 H 1.09008 * 109.46726 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.46946 * 299.99691 * 3 2 1 31 31 H 1.08994 * 109.47397 * 59.99885 * 4 2 1 32 32 H 1.08995 * 109.47425 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47191 * 300.00194 * 4 2 1 34 34 H 1.08993 * 109.46964 * 183.50603 * 5 2 1 35 35 H 1.08999 * 109.46404 * 303.50489 * 5 2 1 36 36 H 0.97009 * 119.99489 * 179.97438 * 11 10 8 37 37 H 1.09007 * 109.46781 * 300.00314 * 17 16 6 38 38 H 1.09002 * 109.47149 * 59.99677 * 17 16 6 39 39 H 1.09003 * 109.46728 * 299.99618 * 18 17 16 40 40 H 1.08999 * 109.47240 * 59.99648 * 18 17 16 41 41 H 1.08991 * 109.47108 * 299.99878 * 19 18 17 42 42 H 1.09000 * 109.46857 * 59.99977 * 19 18 17 43 43 H 1.08005 * 125.89094 * 359.95990 * 21 20 19 44 44 H 1.07998 * 126.29165 * 180.16291 * 22 21 20 45 45 H 1.08009 * 126.29310 * 179.73559 * 23 22 21 46 46 H 1.08001 * 125.89272 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3851 0.0000 4 6 1.9586 -0.6924 1.1995 5 6 1.9587 -0.6925 -1.1994 6 6 1.5220 0.0778 -2.4471 7 1 1.8264 1.1204 -2.3555 8 6 2.1696 -0.5296 -3.6647 9 1 2.8210 0.0684 -4.2849 10 6 1.9308 -1.8487 -3.9870 11 7 1.1381 -2.5770 -3.2315 12 14 2.7341 -2.6018 -5.4960 13 1 3.5743 -1.5802 -6.1712 14 1 3.5833 -3.7484 -5.0845 15 1 1.6830 -3.0750 -6.4321 16 8 0.1007 0.0063 -2.5779 17 6 -0.4822 1.1443 -3.2159 18 6 -1.9987 0.9603 -3.3008 19 6 -2.6229 2.1790 -3.9834 20 7 -4.0749 2.0025 -4.0652 21 6 -4.7472 1.4192 -5.0980 22 6 -6.0641 1.4384 -4.8082 23 6 -6.2109 2.0651 -3.5550 24 6 -4.9778 2.3996 -3.1240 25 1 -0.3634 0.6689 -0.7802 26 1 -0.3634 -1.0102 -0.1892 27 1 -0.3633 0.3412 0.9694 28 1 1.5952 1.8988 0.8899 29 1 3.0487 1.3850 -0.0005 30 1 1.5952 1.8988 -0.8900 31 1 1.5953 -1.7200 1.1996 32 1 3.0486 -0.6921 1.1998 33 1 1.5953 -0.1786 2.0895 34 1 3.0468 -0.7472 -1.1684 35 1 1.5450 -1.7004 -1.2312 36 1 0.9698 -3.5050 -3.4585 37 1 -0.2571 2.0402 -2.6372 38 1 -0.0715 1.2479 -4.2203 39 1 -2.2241 0.0643 -3.8793 40 1 -2.4090 0.8569 -2.2963 41 1 -2.3975 3.0747 -3.4046 42 1 -2.2127 2.2827 -4.9879 43 1 -4.3018 1.0102 -5.9929 44 1 -6.8602 1.0492 -5.4255 45 1 -7.1404 2.2445 -3.0349 46 1 -4.7453 2.8961 -2.1934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209927869.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:59 Heat of formation + Delta-G solvation = 106.567023 kcal Electronic energy + Delta-G solvation = -23289.593291 eV Core-core repulsion = 20106.036008 eV Total energy + Delta-G solvation = -3183.557283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.197 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.27259 -41.84165 -38.60838 -35.67148 -34.25980 -31.85433 -30.70997 -30.34275 -30.19303 -29.50102 -27.69216 -26.13745 -24.90361 -22.80655 -22.51531 -21.19879 -20.69876 -19.02866 -18.70500 -18.38012 -18.15705 -17.79132 -16.87784 -16.51526 -15.92284 -15.63658 -15.11409 -15.02511 -14.83185 -14.60749 -14.34185 -14.16498 -14.10138 -13.98951 -13.81795 -13.73757 -13.47002 -13.33853 -12.97194 -12.81434 -12.73164 -12.58622 -12.28372 -12.20185 -12.05922 -11.83611 -11.25738 -11.07231 -10.14447 -9.82380 -9.35648 -8.88970 -7.71015 -5.91465 0.33491 1.52390 2.09082 2.12533 2.26147 2.28700 2.31421 2.34544 2.35644 2.39217 3.00097 3.06339 3.13066 3.19861 3.40620 3.53805 3.65377 3.69286 3.69439 3.72214 3.75577 3.83825 4.09244 4.13509 4.18434 4.20630 4.25693 4.28321 4.38611 4.46744 4.51410 4.63187 4.77892 4.88534 4.93999 5.15730 5.22897 5.27805 5.58002 5.60095 6.22698 6.26660 6.29791 6.49688 6.62020 6.70470 7.25502 7.92729 9.32030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.271 5.271 3 C -0.045 4.045 4 C -0.040 4.040 5 C -0.003 4.003 6 C 0.201 3.799 7 H 0.031 0.969 8 C -0.568 4.568 9 H 0.072 0.928 10 C 0.093 3.907 11 N -0.861 5.861 12 Si 0.898 3.102 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.275 1.275 16 O -0.373 6.373 17 C 0.070 3.930 18 C -0.131 4.131 19 C 0.107 3.893 20 N -0.447 5.447 21 C -0.012 4.012 22 C -0.204 4.204 23 C -0.202 4.202 24 C -0.020 4.020 25 H 0.130 0.870 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.156 0.844 36 H 0.275 0.725 37 H 0.029 0.971 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.160 0.840 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.184 7.436 14.697 16.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 N 0.070 4.930 3 C -0.187 4.187 4 C -0.182 4.182 5 C -0.122 4.122 6 C 0.145 3.855 7 H 0.049 0.951 8 C -0.605 4.605 9 H 0.090 0.910 10 C -0.117 4.117 11 N -0.495 5.495 12 Si 0.724 3.276 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.200 1.200 16 O -0.293 6.293 17 C -0.007 4.007 18 C -0.170 4.170 19 C -0.015 4.015 20 N -0.123 5.123 21 C -0.142 4.142 22 C -0.228 4.228 23 C -0.227 4.227 24 C -0.150 4.150 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.174 0.826 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.177 0.823 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.377 7.129 14.812 16.610 hybrid contribution 0.506 -0.407 -0.944 1.146 sum 2.883 6.722 13.868 15.679 Atomic orbital electron populations 1.24252 0.76414 1.10450 1.06596 1.46396 1.15615 1.14615 1.16366 1.24033 1.04953 0.81716 1.07999 1.23991 1.04861 1.02010 0.87373 1.24956 1.02891 1.03584 0.80725 1.19925 0.80497 0.93193 0.91913 0.95150 1.21282 1.31651 0.97130 1.10450 0.90966 1.24990 0.92941 0.96850 0.96910 1.69651 1.32847 1.09146 1.37904 0.86387 0.79699 0.79506 0.81982 1.19192 1.20133 1.20031 1.88044 1.22033 1.40950 1.78310 1.22075 0.92121 0.88247 0.98286 1.21865 0.94623 0.98607 1.01869 1.21737 0.77669 0.98870 1.03186 1.44111 1.05945 1.45915 1.16340 1.21886 0.92553 1.05264 0.94509 1.20936 0.95375 1.07733 0.98778 1.20922 0.96734 1.06904 0.98112 1.21767 0.88983 1.07906 0.96295 0.85214 0.86148 0.88698 0.87382 0.86769 0.86405 0.86564 0.86941 0.87369 0.86610 0.82650 0.91470 0.95313 0.92565 0.90002 0.91268 0.89500 0.89047 0.82270 0.84818 0.84889 0.82528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.32 7.10 60.06 0.43 0.74 16 2 N -0.27 2.63 0.05 -395.63 -0.02 2.61 16 3 C -0.05 0.51 7.56 60.07 0.45 0.97 16 4 C -0.04 0.49 7.99 60.07 0.48 0.97 16 5 C 0.00 0.01 3.49 -3.83 -0.01 0.00 16 6 C 0.20 0.13 1.86 -27.89 -0.05 0.08 16 7 H 0.03 -0.05 5.48 -51.93 -0.28 -0.34 16 8 C -0.57 -3.90 8.89 -34.44 -0.31 -4.21 16 9 H 0.07 0.60 7.81 -52.48 -0.41 0.19 16 10 C 0.09 0.82 5.24 -17.82 -0.09 0.73 16 11 N -0.86 -7.70 10.96 55.43 0.61 -7.09 16 12 Si 0.90 8.19 29.54 -169.99 -5.02 3.17 16 13 H -0.27 -2.58 7.11 56.52 0.40 -2.18 16 14 H -0.28 -2.67 7.11 56.52 0.40 -2.26 16 15 H -0.28 -2.91 7.11 56.52 0.40 -2.51 16 16 O -0.37 -0.44 6.51 -35.23 -0.23 -0.67 16 17 C 0.07 -0.03 5.03 37.16 0.19 0.16 16 18 C -0.13 0.05 5.91 -26.73 -0.16 -0.10 16 19 C 0.11 -0.11 6.09 -4.04 -0.02 -0.13 16 20 N -0.45 -0.76 2.75 -117.13 -0.32 -1.08 16 21 C -0.01 -0.04 11.43 -16.75 -0.19 -0.23 16 22 C -0.20 -0.73 10.86 -39.78 -0.43 -1.16 16 23 C -0.20 -0.62 10.86 -39.78 -0.43 -1.05 16 24 C -0.02 -0.04 11.43 -16.75 -0.19 -0.23 16 25 H 0.13 -0.92 5.08 -51.93 -0.26 -1.19 16 26 H 0.12 -0.79 7.93 -51.93 -0.41 -1.20 16 27 H 0.09 -1.11 7.98 -51.93 -0.41 -1.52 16 28 H 0.11 -1.47 8.14 -51.93 -0.42 -1.90 16 29 H 0.11 -1.37 8.14 -51.92 -0.42 -1.79 16 30 H 0.12 -1.17 5.85 -51.93 -0.30 -1.47 16 31 H 0.12 -1.31 8.14 -51.93 -0.42 -1.73 16 32 H 0.11 -1.42 8.13 -51.93 -0.42 -1.84 16 33 H 0.11 -1.51 8.06 -51.93 -0.42 -1.93 16 34 H 0.12 -0.49 8.10 -51.93 -0.42 -0.91 16 35 H 0.16 -0.05 6.14 -51.93 -0.32 -0.37 16 36 H 0.28 2.66 8.31 -40.82 -0.34 2.32 16 37 H 0.03 -0.10 8.04 -51.93 -0.42 -0.52 16 38 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.16 0.20 8.06 -52.48 -0.42 -0.23 16 44 H 0.13 0.33 8.06 -52.49 -0.42 -0.10 16 45 H 0.13 0.22 8.06 -52.48 -0.42 -0.20 16 46 H 0.16 -0.17 8.06 -52.49 -0.42 -0.60 16 LS Contribution 359.16 15.07 5.41 5.41 Total: 0.00 -17.41 359.16 -8.21 -25.62 By element: Atomic # 1 Polarization: -16.19 SS G_CDS: -8.29 Total: -24.49 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.35 Total: -3.48 kcal Atomic # 7 Polarization: -5.83 SS G_CDS: 0.27 Total: -5.56 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -0.23 Total: -0.67 kcal Atomic # 14 Polarization: 8.19 SS G_CDS: -5.02 Total: 3.17 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -17.41 -8.21 -25.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209927869.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.190 kcal (2) G-P(sol) polarization free energy of solvation -17.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds