Wall clock time and date at job start Tue Mar 31 2020 05:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99879 * 2 1 4 4 H 1.48497 * 109.46966 * 269.99861 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00032 * 3 2 1 6 6 H 1.48500 * 109.46997 * 150.00419 * 3 2 1 7 7 C 1.37879 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00046 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99751 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47032 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47324 * 180.02562 * 11 10 9 13 13 C 1.52990 * 109.47414 * 180.02562 * 12 11 10 14 14 O 1.42907 * 109.47238 * 179.97438 * 13 12 11 15 15 C 1.42894 * 113.99867 * 179.97438 * 14 13 12 16 16 C 1.53099 * 109.52943 * 269.67646 * 15 14 13 17 17 C 1.53034 * 109.29509 * 182.43805 * 16 15 14 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 15 19 19 C 1.46898 * 110.99897 * 174.16738 * 18 17 16 20 20 C 1.52999 * 117.50000 * 248.61536 * 19 18 17 21 21 C 1.52999 * 60.00272 * 252.51270 * 20 19 18 22 22 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 23 23 C 1.53039 * 109.52227 * 61.74204 * 22 18 17 24 24 H 0.96996 * 120.00092 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47118 * 59.99989 * 9 7 2 26 26 H 1.09000 * 109.47309 * 299.99689 * 9 7 2 27 27 H 1.09011 * 109.46568 * 60.00284 * 10 9 7 28 28 H 1.08991 * 109.47452 * 300.00508 * 10 9 7 29 29 H 1.08998 * 109.47296 * 60.00645 * 11 10 9 30 30 H 1.09000 * 109.47430 * 300.00033 * 11 10 9 31 31 H 1.09007 * 109.46841 * 59.99755 * 12 11 10 32 32 H 1.09001 * 109.46934 * 300.00643 * 12 11 10 33 33 H 1.08998 * 109.47520 * 60.00123 * 13 12 11 34 34 H 1.09000 * 109.47116 * 299.99567 * 13 12 11 35 35 H 1.09002 * 109.52473 * 29.87471 * 15 14 13 36 36 H 1.09007 * 109.48839 * 62.49447 * 16 15 14 37 37 H 1.09009 * 109.50682 * 302.39234 * 16 15 14 38 38 H 1.09002 * 109.46271 * 299.17460 * 17 16 15 39 39 H 1.08994 * 109.46242 * 179.19760 * 17 16 15 40 40 H 1.08997 * 115.55242 * 34.33050 * 19 18 17 41 41 H 1.08999 * 117.49599 * 0.02562 * 20 19 18 42 42 H 1.08995 * 117.49715 * 145.01671 * 20 19 18 43 43 H 1.09000 * 117.49718 * 252.51107 * 21 20 19 44 44 H 1.09002 * 117.49753 * 107.49143 * 21 20 19 45 45 H 1.08993 * 109.46229 * 181.76227 * 22 18 17 46 46 H 1.09008 * 109.45803 * 301.73838 * 22 18 17 47 47 H 1.08994 * 109.50227 * 60.75933 * 23 22 18 48 48 H 1.08998 * 109.50241 * 180.83988 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6365 -0.0022 12 6 6.0616 -4.0790 -0.0028 13 6 7.5915 -4.0791 -0.0033 14 8 8.0678 -5.4264 -0.0032 15 6 9.4923 -5.5392 -0.0043 16 6 10.0007 -5.5882 -1.4476 17 6 11.5202 -5.7701 -1.4426 18 7 11.8630 -7.0141 -0.7417 19 6 13.3022 -7.2925 -0.8367 20 6 13.7354 -8.4928 -1.6808 21 6 13.8233 -8.5591 -0.1547 22 6 11.4266 -6.9715 0.6599 23 6 9.9043 -6.8253 0.7174 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8745 -0.6801 -0.8911 27 1 3.6578 -3.1505 -0.8909 28 1 3.6585 -3.1502 0.8891 29 1 5.9155 -2.1225 0.8873 30 1 5.9141 -2.1230 -0.8927 31 1 5.6974 -4.5928 -0.8925 32 1 5.6989 -4.5930 0.8874 33 1 7.9552 -3.5655 0.8866 34 1 7.9544 -3.5651 -0.8934 35 1 9.9262 -4.6797 0.5067 36 1 9.7473 -4.6569 -1.9543 37 1 9.5357 -6.4249 -1.9691 38 1 11.9853 -4.9261 -0.9332 39 1 11.8834 -5.8197 -2.4691 40 1 13.9515 -6.4170 -0.8357 41 1 12.9524 -9.0757 -2.1658 42 1 14.6697 -8.4071 -2.2355 43 1 14.8155 -8.5170 0.2945 44 1 13.0982 -9.1859 0.3644 45 1 11.7221 -7.8935 1.1604 46 1 11.8921 -6.1217 1.1594 47 1 9.4379 -7.6814 0.2300 48 1 9.5823 -6.7787 1.7576 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224369573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:03 Heat of formation + Delta-G solvation = -48.755737 kcal Electronic energy + Delta-G solvation = -21450.101148 eV Core-core repulsion = 18311.578736 eV Total energy + Delta-G solvation = -3138.522412 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92086 -38.18507 -36.15671 -35.14939 -32.83425 -31.51989 -31.18396 -30.25928 -26.80494 -24.30467 -23.73949 -23.10974 -22.41495 -21.22148 -20.98264 -20.05336 -20.00747 -17.32463 -16.77519 -16.47306 -15.93521 -15.53918 -15.06956 -15.03125 -14.65018 -14.21534 -14.07220 -13.67708 -13.32477 -13.05138 -12.79007 -12.64720 -12.24074 -12.23804 -11.95164 -11.89706 -11.63921 -11.54838 -11.33050 -11.10935 -10.93289 -10.83145 -10.77079 -10.61505 -10.52958 -10.42872 -9.86021 -9.65756 -9.52758 -9.44126 -9.12272 -8.73517 -8.50218 -6.00692 -3.98136 3.24890 3.32628 3.35799 3.39661 3.43862 3.52025 4.41081 4.45847 4.48277 4.49231 4.55387 4.70167 4.80007 4.87251 4.98844 5.01410 5.09150 5.16315 5.19132 5.23745 5.26762 5.33352 5.36492 5.43939 5.46504 5.53503 5.58565 5.66990 5.68892 5.71310 5.76714 5.90158 5.97133 6.04098 6.23286 6.32506 6.43324 6.63848 6.69281 6.70787 6.78578 6.99045 7.19920 7.37425 7.50001 7.84484 8.59014 9.05026 9.62202 11.12963 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.053658 B = 0.002010 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.698087 B =13924.353446 C =14120.856500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.118 4.118 12 C -0.117 4.117 13 C 0.062 3.938 14 O -0.380 6.380 15 C 0.089 3.911 16 C -0.139 4.139 17 C 0.063 3.937 18 N -0.512 5.512 19 C 0.002 3.998 20 C -0.162 4.162 21 C -0.176 4.176 22 C 0.060 3.940 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.010 0.990 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.034 0.966 47 H 0.080 0.920 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.551 -15.215 -0.678 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.154 4.154 13 C -0.014 4.014 14 O -0.300 6.300 15 C 0.031 3.969 16 C -0.177 4.177 17 C -0.064 4.064 18 N -0.236 5.236 19 C -0.107 4.107 20 C -0.200 4.200 21 C -0.213 4.213 22 C -0.067 4.067 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.099 0.901 46 H 0.052 0.948 47 H 0.099 0.901 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 30.010 -15.624 -0.898 33.845 hybrid contribution 0.938 1.906 0.328 2.149 sum 30.948 -13.718 -0.569 33.857 Atomic orbital electron populations 1.69923 1.06294 1.26794 1.51446 1.25057 0.94744 0.99195 0.94679 0.86757 0.80337 0.83611 0.78443 1.20350 1.21440 1.19061 1.21202 0.89708 0.94434 1.50427 0.91071 1.19591 0.97014 0.92602 0.96074 1.21443 0.91686 0.99651 1.01180 1.21619 0.98192 0.94342 1.01438 1.21575 0.92135 0.98507 1.03195 1.22659 0.96052 0.82975 0.99707 1.87935 1.19977 1.27058 1.95009 1.22079 0.81931 0.97743 0.95127 1.22102 0.94668 1.03106 0.97827 1.22019 0.95785 0.89527 0.99119 1.61724 1.12859 1.35159 1.13904 1.22409 0.88883 0.92526 1.06858 1.23068 1.02580 1.00978 0.93387 1.23070 1.02213 1.00009 0.96026 1.22061 0.94920 1.01233 0.88497 1.21659 0.94510 0.98042 1.00991 0.92817 0.96759 0.97183 0.92790 0.92765 0.92485 0.92476 0.91283 0.91321 0.93625 0.93595 0.92724 0.91137 0.90025 0.94820 0.90263 0.89317 0.88070 0.88823 0.88690 0.88243 0.90055 0.94759 0.90092 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 11 C -0.12 -1.90 5.21 -26.73 -0.14 -2.03 16 12 C -0.12 -1.64 5.58 -26.73 -0.15 -1.79 16 13 C 0.06 0.77 5.75 37.15 0.21 0.98 16 14 O -0.38 -4.84 9.99 -35.23 -0.35 -5.19 16 15 C 0.09 0.90 2.68 -26.62 -0.07 0.82 16 16 C -0.14 -1.27 5.71 -26.66 -0.15 -1.42 16 17 C 0.06 0.50 5.43 -3.84 -0.02 0.48 16 18 N -0.51 -4.12 4.80 -226.69 -1.09 -5.21 16 19 C 0.00 0.01 5.30 -67.71 -0.36 -0.35 16 20 C -0.16 -0.98 10.46 -26.73 -0.28 -1.26 16 21 C -0.18 -1.00 9.70 -26.73 -0.26 -1.26 16 22 C 0.06 0.46 5.34 -3.83 -0.02 0.44 16 23 C -0.11 -1.01 5.75 -26.65 -0.15 -1.17 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.05 0.53 7.96 -51.93 -0.41 0.12 16 35 H 0.05 0.52 7.79 -51.93 -0.40 0.12 16 36 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 37 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 38 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.59 8.12 -51.93 -0.42 0.16 16 40 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.59 7.23 -51.93 -0.38 0.22 16 45 H 0.08 0.55 6.68 -51.93 -0.35 0.21 16 46 H 0.03 0.26 8.14 -51.92 -0.42 -0.17 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -31.33 375.18 -11.24 -42.57 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -9.49 Total: -4.59 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -2.07 Total: -23.01 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: -0.32 Total: -32.91 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.35 Total: -5.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.33 -11.24 -42.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224369573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.187 kcal (2) G-P(sol) polarization free energy of solvation -31.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds