Wall clock time and date at job start Tue Mar 31 2020 05:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 C 1.53004 * 109.46915 * 124.99991 * 3 2 1 5 5 C 1.53009 * 109.46775 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46881 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47290 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47290 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47290 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.47386 * 179.97438 * 9 8 7 11 11 C 1.42904 * 113.99972 * 179.97438 * 10 9 8 12 12 H 1.09000 * 110.63995 * 333.14416 * 11 10 9 13 13 C 1.55160 * 110.72005 * 210.00360 * 11 10 9 14 14 C 1.54913 * 101.57912 * 206.13728 * 13 11 10 15 15 N 1.47421 * 104.83220 * 37.00753 * 14 13 11 16 16 C 1.36943 * 125.64255 * 155.83614 * 15 14 13 17 17 H 1.07997 * 119.99393 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00032 * 0.02562 * 16 15 14 19 19 N 1.31611 * 120.00291 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99608 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46983 * 89.99904 * 20 18 16 22 22 H 1.48505 * 109.47071 * 210.00036 * 20 18 16 23 23 H 1.48494 * 109.47044 * 329.99852 * 20 18 16 24 24 C 1.47015 * 108.70504 * 335.87342 * 15 14 13 25 25 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 26 26 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 29 29 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 30 30 H 1.08998 * 109.47237 * 299.99538 * 4 3 2 31 31 H 1.08998 * 109.46722 * 60.00211 * 4 3 2 32 32 H 1.08998 * 109.46950 * 299.99823 * 5 4 3 33 33 H 1.08997 * 109.47255 * 60.00079 * 5 4 3 34 34 H 1.09008 * 109.47232 * 300.00097 * 6 5 4 35 35 H 1.08997 * 109.47298 * 59.99878 * 6 5 4 36 36 H 1.08999 * 109.47161 * 299.99932 * 7 6 5 37 37 H 1.08997 * 109.47105 * 59.99693 * 7 6 5 38 38 H 1.08998 * 109.46998 * 299.99499 * 8 7 6 39 39 H 1.08997 * 109.47298 * 59.99811 * 8 7 6 40 40 H 1.08999 * 109.47161 * 299.99932 * 9 8 7 41 41 H 1.09011 * 109.47058 * 59.99629 * 9 8 7 42 42 H 1.09002 * 111.00081 * 324.21031 * 13 11 10 43 43 H 1.09002 * 111.00564 * 88.05909 * 13 11 10 44 44 H 1.09000 * 110.36434 * 155.84951 * 14 13 11 45 45 H 1.09000 * 110.35994 * 278.16689 * 14 13 11 46 46 H 0.97004 * 120.00030 * 179.97438 * 19 18 16 47 47 H 1.09007 * 109.88057 * 241.64075 * 24 15 14 48 48 H 1.09000 * 109.88510 * 120.47837 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6578 1.1813 6 6 4.7725 2.6855 2.3625 7 6 5.5376 4.0105 2.3626 8 6 6.5100 4.0379 3.5434 9 6 7.2755 5.3626 3.5431 10 8 8.1833 5.3885 4.6464 11 6 8.9525 6.5894 4.7381 12 1 9.0712 7.0456 3.7553 13 6 10.3352 6.3077 5.3832 14 6 10.6790 7.6879 5.9968 15 7 9.3920 8.2145 6.4862 16 6 9.2359 9.1417 7.4819 17 1 8.2459 9.4639 7.7691 18 6 10.3499 9.6672 8.1218 19 7 11.5563 9.2740 7.7720 20 14 10.1369 10.9325 9.4795 21 1 10.0204 10.2398 10.7878 22 1 11.3139 11.8377 9.5016 23 1 8.9070 11.7258 9.2282 24 6 8.3039 7.5788 5.7290 25 1 -0.5400 0.9354 -0.0004 26 1 -0.5400 -0.9352 -0.0044 27 1 1.8499 -0.9354 0.0004 28 1 2.6213 1.4026 -0.9314 29 1 1.3586 2.1316 0.0896 30 1 2.4773 1.2355 2.1130 31 1 3.7399 0.5064 1.0920 32 1 4.3584 2.7548 0.2499 33 1 3.0959 3.4846 1.2706 34 1 4.2150 2.5882 3.2942 35 1 5.4771 1.8587 2.2728 36 1 6.0950 4.1082 1.4310 37 1 4.8327 4.8370 2.4525 38 1 5.9529 3.9401 4.4752 39 1 7.2148 3.2114 3.4530 40 1 7.8326 5.4601 2.6114 41 1 6.5709 6.1895 3.6333 42 1 10.2568 5.5444 6.1575 43 1 11.0678 6.0222 4.6282 44 1 11.3802 7.5715 6.8232 45 1 11.0945 8.3484 5.2358 46 1 12.3348 9.6416 8.2190 47 1 7.7413 8.3357 5.1823 48 1 7.6429 7.0422 6.4095 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224507428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:37 Heat of formation + Delta-G solvation = -39.527407 kcal Electronic energy + Delta-G solvation = -21017.918339 eV Core-core repulsion = 17879.796098 eV Total energy + Delta-G solvation = -3138.122241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.42150 -37.31806 -36.16831 -35.11452 -32.81424 -31.98314 -29.58665 -28.94998 -27.04882 -25.79283 -24.26187 -22.74226 -21.32225 -21.12608 -20.11798 -20.08359 -19.99667 -16.92619 -16.53145 -16.35155 -15.80164 -15.18477 -14.73342 -14.45623 -14.39187 -14.19840 -13.72394 -13.51638 -13.13919 -12.94944 -12.61219 -12.37332 -12.04515 -11.86015 -11.74781 -11.62760 -11.37812 -11.27970 -11.09666 -10.99700 -10.93965 -10.81750 -10.73544 -10.68020 -10.57136 -10.19150 -10.09225 -9.73949 -9.70507 -9.50021 -9.01774 -8.62923 -6.80893 -5.62790 -3.04626 1.87485 3.42211 3.46659 3.48901 3.89846 4.34725 4.52155 4.55293 4.68090 4.72835 4.85220 4.90510 5.10402 5.13272 5.17703 5.33713 5.37589 5.42575 5.45746 5.49503 5.51978 5.54539 5.55255 5.67611 5.68789 5.74245 5.76186 5.80812 5.88443 5.92962 5.97974 6.05482 6.21584 6.22381 6.23651 6.36533 6.39675 6.58318 6.63624 6.71301 6.77929 7.52309 7.65326 7.72320 7.88315 8.38389 9.24341 9.85148 10.49966 11.41292 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.044625 B = 0.001872 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.306164 B =14950.552214 C =15388.893224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.097 4.097 4 C -0.116 4.116 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.118 4.118 9 C 0.061 3.939 10 O -0.380 6.380 11 C 0.076 3.924 12 H 0.062 0.938 13 C -0.139 4.139 14 C 0.152 3.848 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.119 3.881 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.013 0.987 46 H 0.252 0.748 47 H 0.019 0.981 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.670 -16.175 -15.941 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.155 4.155 9 C -0.016 4.016 10 O -0.298 6.298 11 C 0.018 3.982 12 H 0.080 0.920 13 C -0.178 4.178 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.008 4.008 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.532 -16.186 -15.673 27.366 hybrid contribution -0.200 0.890 0.407 0.999 sum -15.732 -15.296 -15.266 26.730 Atomic orbital electron populations 1.23866 0.96029 1.01809 1.01834 1.23013 0.96063 0.98674 0.99334 1.20808 0.98299 0.95215 0.99073 1.21559 0.97748 0.97947 0.98094 1.21625 0.98116 0.97345 0.98742 1.21583 0.97997 0.97595 0.98466 1.21513 0.97944 0.97791 0.98222 1.21515 0.97931 0.97117 0.98982 1.22479 0.92083 0.97583 0.89449 1.87910 1.54437 1.39043 1.48458 1.23229 0.92128 0.85018 0.97820 0.92031 1.23167 0.93579 1.01451 0.99609 1.21959 0.89827 0.87282 0.98204 1.44398 1.00609 1.47818 1.40139 1.19100 0.93081 1.13928 1.08855 0.90462 1.24794 0.95172 1.00588 1.00194 1.69782 0.96966 1.46344 1.44128 0.86050 0.76888 0.80695 0.81736 1.21562 1.21627 1.20760 1.21674 0.92294 0.93505 0.93307 0.88634 0.88633 0.87494 0.91032 0.91550 0.91873 0.91874 0.91981 0.91969 0.91861 0.91907 0.91936 0.91832 0.91191 0.91336 0.93911 0.93674 0.91182 0.92102 0.87189 0.96887 0.93713 0.96294 0.94895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 14.32 29.01 0.42 -0.76 16 2 C -0.15 -0.95 9.52 -36.03 -0.34 -1.29 16 3 C -0.10 -0.58 5.66 -27.88 -0.16 -0.74 16 4 C -0.12 -0.73 5.20 -26.72 -0.14 -0.87 16 5 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 6 C -0.12 -0.91 5.21 -26.73 -0.14 -1.05 16 7 C -0.12 -1.03 5.21 -26.73 -0.14 -1.17 16 8 C -0.12 -1.32 5.58 -26.73 -0.15 -1.47 16 9 C 0.06 0.84 5.77 37.16 0.21 1.05 16 10 O -0.38 -6.79 10.07 -35.23 -0.35 -7.15 16 11 C 0.08 1.48 3.45 -24.90 -0.09 1.39 16 12 H 0.06 1.11 7.82 -51.93 -0.41 0.70 16 13 C -0.14 -2.87 6.81 -24.58 -0.17 -3.04 16 14 C 0.15 3.85 5.89 -2.53 -0.01 3.83 16 15 N -0.60 -16.26 3.39 -170.08 -0.58 -16.83 16 16 C -0.22 -6.39 10.27 -15.06 -0.15 -6.54 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 20 Si 0.92 22.44 29.55 -169.99 -5.02 17.42 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.12 2.69 7.02 -3.07 -0.02 2.67 16 25 H 0.10 0.53 7.84 -52.48 -0.41 0.12 16 26 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 27 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.40 7.79 -51.93 -0.40 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.04 0.54 8.11 -51.93 -0.42 0.12 16 41 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.11 3.09 5.87 -51.93 -0.30 2.78 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -30.66 383.07 -10.26 -40.92 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -9.52 Total: -3.91 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.12 Total: -9.39 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.02 Total: -43.66 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.35 Total: -7.15 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.66 -10.26 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224507428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds