Wall clock time and date at job start Tue Mar 31 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00477 * 2 1 4 4 C 1.53004 * 109.47536 * 124.99504 * 3 2 1 5 5 C 1.52990 * 109.47479 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47218 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46793 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46417 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.46882 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47164 * 54.99936 * 9 8 7 11 11 O 1.42903 * 109.47171 * 294.99670 * 9 8 7 12 12 C 1.53003 * 109.47376 * 175.00297 * 9 8 7 13 13 N 1.46900 * 109.47407 * 184.99739 * 12 9 8 14 14 C 1.47476 * 111.00139 * 265.97174 * 13 12 9 15 15 C 1.53511 * 87.92923 * 221.29327 * 14 13 12 16 16 C 1.50707 * 114.34293 * 139.68206 * 15 14 13 17 17 H 1.08000 * 119.99932 * 266.07972 * 16 15 14 18 18 C 1.37874 * 119.99989 * 86.07483 * 16 15 14 19 19 N 1.31520 * 119.99780 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00126 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47081 * 89.99816 * 20 18 16 22 22 H 1.48497 * 109.47099 * 210.00035 * 20 18 16 23 23 H 1.48507 * 109.47204 * 330.00139 * 20 18 16 24 24 C 1.47473 * 110.99932 * 169.99733 * 13 12 9 25 25 H 1.07997 * 120.00210 * 179.97438 * 1 2 3 26 26 H 1.08007 * 119.99588 * 0.02562 * 1 2 3 27 27 H 1.08007 * 119.99588 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47283 * 4.99963 * 3 2 1 29 29 H 1.08996 * 109.47305 * 244.99783 * 3 2 1 30 30 H 1.09000 * 109.46460 * 59.99955 * 4 3 2 31 31 H 1.09006 * 109.47127 * 300.00615 * 4 3 2 32 32 H 1.09000 * 109.47193 * 60.00548 * 5 4 3 33 33 H 1.08996 * 109.47451 * 300.00333 * 5 4 3 34 34 H 1.09000 * 109.46409 * 60.00290 * 6 5 4 35 35 H 1.08996 * 109.47363 * 300.00610 * 6 5 4 36 36 H 1.09000 * 109.47493 * 60.00847 * 7 6 5 37 37 H 1.09000 * 109.47348 * 299.99910 * 7 6 5 38 38 H 1.09000 * 109.47347 * 60.00384 * 8 7 6 39 39 H 1.08997 * 109.47714 * 299.99924 * 8 7 6 40 40 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 41 41 H 1.09005 * 109.46682 * 304.99749 * 12 9 8 42 42 H 1.08999 * 109.47221 * 64.99915 * 12 9 8 43 43 H 1.09005 * 113.47492 * 336.06108 * 14 13 12 44 44 H 1.08996 * 113.48106 * 106.53021 * 14 13 12 45 45 H 1.08996 * 114.17633 * 272.37493 * 15 14 13 46 46 H 0.97005 * 119.99423 * 179.97438 * 19 18 16 47 47 H 1.09003 * 113.47566 * 253.47295 * 24 13 12 48 48 H 1.09000 * 113.48192 * 23.87832 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1817 5 6 3.8006 2.6576 1.1813 6 6 4.7717 2.6859 2.3634 7 6 5.5367 4.0109 2.3633 8 6 6.5081 4.0388 3.5451 9 6 7.2728 5.3640 3.5454 10 1 6.5643 6.1923 3.5456 11 8 8.0945 5.4402 2.3788 12 6 8.1524 5.4450 4.7947 13 7 8.7944 6.7648 4.8569 14 6 10.1348 6.7301 4.2429 15 6 10.6263 7.6121 5.3992 16 6 11.9864 7.2389 5.9304 17 1 12.0717 6.5721 6.7756 18 6 13.1218 7.7488 5.3373 19 7 13.0179 8.5612 4.3082 20 14 14.8076 7.2857 5.9952 21 1 15.2925 6.0663 5.3000 22 1 15.7565 8.4025 5.7554 23 1 14.7141 7.0199 7.4533 24 6 9.4571 6.9694 6.1584 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4024 -0.9313 30 1 3.7399 0.5064 1.0921 31 1 2.4772 1.2355 2.1131 32 1 3.0960 3.4845 1.2706 33 1 4.3585 2.7547 0.2500 34 1 5.4763 1.8590 2.2745 35 1 4.2135 2.5890 3.2946 36 1 4.8318 4.8375 2.4525 37 1 6.0949 4.1081 1.4322 38 1 7.2131 3.2122 3.4556 39 1 5.9504 3.9414 4.4764 40 1 8.7501 4.7324 2.3125 41 1 7.5371 5.2980 5.6824 42 1 8.9180 4.6704 4.7509 43 1 10.5826 5.7364 4.2339 44 1 10.1804 7.2225 3.2716 45 1 10.5111 8.6818 5.2249 46 1 13.8168 8.9201 3.8912 47 1 8.9282 7.6646 6.8105 48 1 9.7232 6.0396 6.6612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253228957.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:38 Heat of formation + Delta-G solvation = -38.561779 kcal Electronic energy + Delta-G solvation = -21248.010103 eV Core-core repulsion = 18109.929735 eV Total energy + Delta-G solvation = -3138.080368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.17555 -37.57875 -36.76961 -34.84972 -32.70712 -32.33903 -30.54824 -28.60925 -26.45316 -24.69142 -24.66699 -22.80614 -21.40600 -21.08283 -20.86333 -20.04351 -18.54043 -16.72651 -16.40858 -15.88478 -15.81491 -15.28255 -14.82205 -14.60288 -14.41013 -14.09784 -13.90044 -13.78328 -13.14679 -12.96160 -12.86519 -12.36917 -12.02542 -11.89029 -11.65926 -11.61702 -11.43861 -11.29668 -11.15931 -10.99071 -10.92847 -10.79963 -10.63225 -10.60842 -10.54030 -10.23880 -10.04841 -9.69600 -9.35038 -9.10642 -8.89044 -8.41094 -7.92119 -6.03090 -4.07822 1.89451 3.28971 3.36213 3.39043 4.26643 4.40876 4.51170 4.60362 4.72008 4.73957 4.85090 4.94925 5.01549 5.11031 5.21476 5.24997 5.28402 5.40998 5.44263 5.46968 5.48629 5.58324 5.62157 5.70727 5.78647 5.83900 5.87543 5.89648 5.95686 6.04642 6.10852 6.19073 6.24421 6.31061 6.38665 6.38857 6.43096 6.54362 6.70837 6.79360 7.24201 7.27561 7.74958 7.94248 7.96407 8.13763 8.40249 8.95154 9.56829 11.06360 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.047677 B = 0.001991 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.141576 B =14059.891942 C =14176.979342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.097 4.097 4 C -0.115 4.115 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.151 4.151 9 C 0.117 3.883 10 H 0.099 0.901 11 O -0.552 6.552 12 C -0.011 4.011 13 N -0.478 5.478 14 C 0.016 3.984 15 C 0.038 3.962 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.008 4.008 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.367 0.633 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.261 0.739 47 H 0.060 0.940 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.982 -15.101 -6.328 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.170 4.170 3 C -0.134 4.134 4 C -0.153 4.153 5 C -0.158 4.158 6 C -0.157 4.157 7 C -0.152 4.152 8 C -0.189 4.189 9 C 0.058 3.942 10 H 0.117 0.883 11 O -0.356 6.356 12 C -0.141 4.141 13 N -0.200 5.200 14 C -0.113 4.113 15 C 0.019 3.981 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.137 4.137 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.213 0.787 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.786 -14.008 -6.811 25.975 hybrid contribution 1.755 -1.608 0.768 2.501 sum -19.031 -15.616 -6.043 25.349 Atomic orbital electron populations 1.23860 0.96022 1.01786 1.01939 1.23019 0.96062 0.98687 0.99244 1.20812 0.98308 0.95176 0.99138 1.21555 0.97711 0.98025 0.97992 1.21621 0.98125 0.97182 0.98897 1.21618 0.97946 0.97989 0.98160 1.21514 0.97738 0.96960 0.98978 1.22316 0.99014 0.98520 0.99074 1.21889 0.91443 0.96441 0.84475 0.88279 1.86613 1.51129 1.54364 1.43530 1.23345 0.98664 0.93769 0.98318 1.68819 1.17952 1.24073 1.09187 1.23986 0.86494 0.99893 1.00946 1.20126 0.91398 0.96066 0.90500 1.21033 0.90359 1.28694 1.15452 0.92558 1.25019 0.99131 0.94585 0.94871 1.69981 1.29086 1.31384 1.21732 0.86628 0.84118 0.78085 0.79355 1.20700 1.21123 1.19872 1.24027 0.97333 0.99726 0.92631 0.88651 0.88636 0.87512 0.91544 0.90977 0.91944 0.91995 0.92020 0.91903 0.92208 0.92264 0.92108 0.91315 0.91968 0.91402 0.78700 0.91500 0.94209 0.93403 0.91540 0.91872 0.92881 0.92168 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 14.32 29.01 0.42 -0.83 16 2 C -0.15 -1.00 9.52 -36.03 -0.34 -1.34 16 3 C -0.10 -0.64 5.66 -27.88 -0.16 -0.80 16 4 C -0.12 -0.80 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.92 5.21 -26.73 -0.14 -1.06 16 6 C -0.12 -1.00 5.21 -26.73 -0.14 -1.14 16 7 C -0.11 -1.15 5.11 -26.73 -0.14 -1.28 16 8 C -0.15 -1.65 4.89 -26.73 -0.13 -1.78 16 9 C 0.12 1.67 3.21 -26.73 -0.09 1.59 16 10 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 11 O -0.55 -8.69 12.21 -35.23 -0.43 -9.12 16 12 C -0.01 -0.19 4.53 -3.82 -0.02 -0.20 16 13 N -0.48 -9.85 6.31 -244.66 -1.54 -11.39 16 14 C 0.02 0.37 6.66 -7.55 -0.05 0.31 16 15 C 0.04 0.98 3.76 -91.24 -0.34 0.63 16 16 C -0.52 -14.24 8.83 -34.44 -0.30 -14.54 16 17 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 18 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 19 N -0.88 -25.80 13.26 55.43 0.74 -25.06 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 C -0.01 -0.18 7.24 -7.56 -0.05 -0.24 16 25 H 0.10 0.50 8.06 -52.49 -0.42 0.08 16 26 H 0.10 0.56 7.84 -52.48 -0.41 0.14 16 27 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.07 0.43 7.79 -51.93 -0.40 0.03 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.37 4.81 9.05 45.56 0.41 5.22 16 41 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 42 H 0.04 0.66 7.30 -51.93 -0.38 0.28 16 43 H 0.05 1.11 7.38 -51.93 -0.38 0.73 16 44 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 45 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 46 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.05 1.06 7.87 -51.93 -0.41 0.66 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -29.33 386.78 -10.86 -40.19 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.71 Total: 3.29 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -1.72 Total: -19.85 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.81 Total: -36.45 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.43 Total: -9.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.33 -10.86 -40.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253228957.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.629 kcal (2) G-P(sol) polarization free energy of solvation -29.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds